ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | baak4h04 |
|---|---|
| Clone Library Name | barley_pub |
>FUS_RINDR (P41356) Fusion glycoprotein F0 precursor [Contains: Fusion| glycoprotein F2; Fusion glycoprotein F1] Length = 546 Score = 31.2 bits (69), Expect = 0.69 Identities = 14/26 (53%), Positives = 19/26 (73%) Frame = +3 Query: 99 FILTRGNLAVSFASTLEACYSLGSIL 176 FIL++GNL + AS L CY+ GSI+ Sbjct: 375 FILSKGNLIANCASILCKCYTTGSII 400
>FUS_RINDK (P12574) Fusion glycoprotein F0 precursor [Contains: Fusion| glycoprotein F2; Fusion glycoprotein F1] Length = 546 Score = 31.2 bits (69), Expect = 0.69 Identities = 14/26 (53%), Positives = 19/26 (73%) Frame = +3 Query: 99 FILTRGNLAVSFASTLEACYSLGSIL 176 FIL++GNL + AS L CY+ GSI+ Sbjct: 375 FILSKGNLIANCASILCKCYTTGSII 400
>FUS_RINDB (P41360) Fusion glycoprotein F0 precursor [Contains: Fusion| glycoprotein F2; Fusion glycoprotein F1] Length = 546 Score = 31.2 bits (69), Expect = 0.69 Identities = 14/26 (53%), Positives = 19/26 (73%) Frame = +3 Query: 99 FILTRGNLAVSFASTLEACYSLGSIL 176 FIL++GNL + AS L CY+ GSI+ Sbjct: 375 FILSKGNLIANCASILCKCYTTGSII 400
>FUS_MEASY (P26032) Fusion glycoprotein F0 precursor [Contains: Fusion| glycoprotein F2; Fusion glycoprotein F1] Length = 534 Score = 30.8 bits (68), Expect = 0.90 Identities = 20/55 (36%), Positives = 28/55 (50%), Gaps = 11/55 (20%) Frame = +3 Query: 45 PPMPASVKCLQ-----CTR------FVGLFILTRGNLAVSFASTLEACYSLGSIL 176 P P +CL+ C R F FIL++GNL + AS L CY+ G+I+ Sbjct: 350 PMSPLLQECLRGSTKSCARTLVSGSFGNRFILSQGNLIANCASILCKCYTTGTII 404
>FUS_MEASZ (P69358) Fusion glycoprotein F0 precursor [Contains: Fusion| glycoprotein F2; Fusion glycoprotein F1] Length = 550 Score = 30.8 bits (68), Expect = 0.90 Identities = 20/55 (36%), Positives = 28/55 (50%), Gaps = 11/55 (20%) Frame = +3 Query: 45 PPMPASVKCLQ-----CTR------FVGLFILTRGNLAVSFASTLEACYSLGSIL 176 P P +CL+ C R F FIL++GNL + AS L CY+ G+I+ Sbjct: 350 PMSPLLQECLRGSTKSCARTLVSGSFGNRFILSQGNLIANCASILCKCYTTGTII 404
>FUS_MEASP (P69357) Fusion glycoprotein F0 precursor [Contains: Fusion| glycoprotein F2; Fusion glycoprotein F1] Length = 550 Score = 30.8 bits (68), Expect = 0.90 Identities = 20/55 (36%), Positives = 28/55 (50%), Gaps = 11/55 (20%) Frame = +3 Query: 45 PPMPASVKCLQ-----CTR------FVGLFILTRGNLAVSFASTLEACYSLGSIL 176 P P +CL+ C R F FIL++GNL + AS L CY+ G+I+ Sbjct: 350 PMSPLLQECLRGSTKSCARTLVSGSFGNRFILSQGNLIANCASILCKCYTTGTII 404
>FUS_MEASL (P69356) Fusion glycoprotein F0 precursor [Contains: Fusion| glycoprotein F2; Fusion glycoprotein F1] Length = 550 Score = 30.8 bits (68), Expect = 0.90 Identities = 20/55 (36%), Positives = 28/55 (50%), Gaps = 11/55 (20%) Frame = +3 Query: 45 PPMPASVKCLQ-----CTR------FVGLFILTRGNLAVSFASTLEACYSLGSIL 176 P P +CL+ C R F FIL++GNL + AS L CY+ G+I+ Sbjct: 350 PMSPLLQECLRGSTKSCARTLVSGSFGNRFILSQGNLIANCASILCKCYTTGTII 404
>FUS_MEASH (P69355) Fusion glycoprotein F0 precursor [Contains: Fusion| glycoprotein F2; Fusion glycoprotein F1] Length = 550 Score = 30.8 bits (68), Expect = 0.90 Identities = 20/55 (36%), Positives = 28/55 (50%), Gaps = 11/55 (20%) Frame = +3 Query: 45 PPMPASVKCLQ-----CTR------FVGLFILTRGNLAVSFASTLEACYSLGSIL 176 P P +CL+ C R F FIL++GNL + AS L CY+ G+I+ Sbjct: 350 PMSPLLQECLRGSTKSCARTLVSGSFGNRFILSQGNLIANCASILCKCYTTGTII 404
>FUS_MEASF (P69354) Fusion glycoprotein F0 precursor [Contains: Fusion| glycoprotein F2; Fusion glycoprotein F1] Length = 550 Score = 30.8 bits (68), Expect = 0.90 Identities = 20/55 (36%), Positives = 28/55 (50%), Gaps = 11/55 (20%) Frame = +3 Query: 45 PPMPASVKCLQ-----CTR------FVGLFILTRGNLAVSFASTLEACYSLGSIL 176 P P +CL+ C R F FIL++GNL + AS L CY+ G+I+ Sbjct: 350 PMSPLLQECLRGSTKSCARTLVSGSFGNRFILSQGNLIANCASILCKCYTTGTII 404
>FUS_MEASE (P69353) Fusion glycoprotein F0 precursor [Contains: Fusion| glycoprotein F2; Fusion glycoprotein F1] Length = 550 Score = 30.8 bits (68), Expect = 0.90 Identities = 20/55 (36%), Positives = 28/55 (50%), Gaps = 11/55 (20%) Frame = +3 Query: 45 PPMPASVKCLQ-----CTR------FVGLFILTRGNLAVSFASTLEACYSLGSIL 176 P P +CL+ C R F FIL++GNL + AS L CY+ G+I+ Sbjct: 350 PMSPLLQECLRGSTKSCARTLVSGSFGNRFILSQGNLIANCASILCKCYTTGTII 404
>FUS_MEASA (P35973) Fusion glycoprotein F0 precursor [Contains: Fusion| glycoprotein F2; Fusion glycoprotein F1] Length = 550 Score = 30.8 bits (68), Expect = 0.90 Identities = 20/55 (36%), Positives = 28/55 (50%), Gaps = 11/55 (20%) Frame = +3 Query: 45 PPMPASVKCLQ-----CTR------FVGLFILTRGNLAVSFASTLEACYSLGSIL 176 P P +CL+ C R F FIL++GNL + AS L CY+ G+I+ Sbjct: 350 PMSPLLQECLRGSTKSCARTLVSGSFGNRFILSQGNLIANCASILCKCYTTGTII 404
>LRP1_CHICK (P98157) Low-density lipoprotein receptor-related protein 1 precursor| (LRP) (Alpha-2-macroglobulin receptor) (A2MR) Length = 4543 Score = 30.8 bits (68), Expect = 0.90 Identities = 19/53 (35%), Positives = 22/53 (41%) Frame = +2 Query: 14 CSELCLQVSSASDACKCQVPPMYTLRWLVYPYSWKFGCQFCIHFRSVLLTRIH 172 CS+LCL S S +C C YS K G Q C S LL +H Sbjct: 1853 CSQLCLPTSETSRSCMCTA-----------GYSLKSGQQSCEGVGSFLLYSVH 1894
>FUS_MEASI (P26031) Fusion glycoprotein F0 precursor [Contains: Fusion| glycoprotein F2; Fusion glycoprotein F1] Length = 529 Score = 30.8 bits (68), Expect = 0.90 Identities = 20/55 (36%), Positives = 28/55 (50%), Gaps = 11/55 (20%) Frame = +3 Query: 45 PPMPASVKCLQ-----CTR------FVGLFILTRGNLAVSFASTLEACYSLGSIL 176 P P +CL+ C R F FIL++GNL + AS L CY+ G+I+ Sbjct: 353 PMSPLLQECLRGSTKSCARTLVSGSFGNRFILSQGNLIANCASILCKCYTTGTII 407
>OR5L2_HUMAN (Q8NGL0) Olfactory receptor 5L2 (HTPCRX16)| Length = 311 Score = 30.4 bits (67), Expect = 1.2 Identities = 15/36 (41%), Positives = 19/36 (52%) Frame = +1 Query: 178 FVAQMNVVLYYYLVSHKQLLRLLDTCNFSGRTCALI 285 FVA N +LY +S K + L C F G C+LI Sbjct: 123 FVAICNPLLYMVTMSQKLRVELTSCCYFCGTVCSLI 158
>FUS_RINDL (P10864) Fusion glycoprotein F0 precursor [Contains: Fusion| glycoprotein F2; Fusion glycoprotein F1] Length = 546 Score = 30.0 bits (66), Expect = 1.5 Identities = 14/26 (53%), Positives = 19/26 (73%) Frame = +3 Query: 99 FILTRGNLAVSFASTLEACYSLGSIL 176 FIL++GNL + AS L CY+ GSI+ Sbjct: 375 FILSKGNLIGNCASILCKCYTTGSII 400
>OR5L1_HUMAN (Q8NGL2) Olfactory receptor 5L1 (OST262)| Length = 311 Score = 29.6 bits (65), Expect = 2.0 Identities = 16/38 (42%), Positives = 20/38 (52%) Frame = +1 Query: 178 FVAQMNVVLYYYLVSHKQLLRLLDTCNFSGRTCALICL 291 FVA N +LY +S K + L C F G C+LI L Sbjct: 123 FVAICNPLLYTVTMSWKVRVELASCCYFCGTVCSLIHL 160
>CAC1C_RAT (P22002) Voltage-dependent L-type calcium channel alpha-1C subunit| (Voltage-gated calcium channel alpha subunit Cav1.2) (Calcium channel, L type, alpha-1 polypeptide, isoform 1, cardiac muscle) (RAT brain class C) (RBC) Length = 2169 Score = 28.9 bits (63), Expect = 3.4 Identities = 15/44 (34%), Positives = 25/44 (56%), Gaps = 2/44 (4%) Frame = +3 Query: 54 PASVKCLQCTRFVGLFILTR--GNLAVSFASTLEACYSLGSILL 179 P + C +C R + +F +TR +L+ AS L + S+ S+LL Sbjct: 643 PLGISCWRCVRLLRIFKITRYWNSLSNLVASLLNSLRSIASLLL 686
>FUS_CDVO (P12569) Fusion glycoprotein F0 precursor [Contains: Fusion| glycoprotein F2; Fusion glycoprotein F1] Length = 662 Score = 28.5 bits (62), Expect = 4.5 Identities = 12/26 (46%), Positives = 18/26 (69%) Frame = +3 Query: 99 FILTRGNLAVSFASTLEACYSLGSIL 176 FIL++GN+ + AS L CYS +I+ Sbjct: 491 FILSKGNIVANCASILCKCYSTSTII 516
>PA2B_AGKAC (Q1ZY03) Phospholipase A2, basic precursor (EC 3.1.1.4)| (Phosphatidylcholine 2-acylhydrolase) Length = 138 Score = 28.5 bits (62), Expect = 4.5 Identities = 9/16 (56%), Positives = 11/16 (68%) Frame = +2 Query: 89 RWLVYPYSWKFGCQFC 136 +W +YPYSWK G C Sbjct: 76 KWDIYPYSWKTGVIIC 91
>LRP1_HUMAN (Q07954) Low-density lipoprotein receptor-related protein 1 precursor| (LRP) (Alpha-2-macroglobulin receptor) (A2MR) (Apolipoprotein E receptor) (APOER) (CD91 antigen) Length = 4544 Score = 28.5 bits (62), Expect = 4.5 Identities = 17/53 (32%), Positives = 22/53 (41%) Frame = +2 Query: 14 CSELCLQVSSASDACKCQVPPMYTLRWLVYPYSWKFGCQFCIHFRSVLLTRIH 172 CS+LCL S + +C C YS + G Q C S LL +H Sbjct: 1857 CSQLCLPTSETTRSCMCTA-----------GYSLRSGQQACEGVGSFLLYSVH 1898
>CH602_CHLCV (P59698) 60 kDa chaperonin 2 (Protein Cpn60 2) (groEL protein 2)| Length = 536 Score = 27.7 bits (60), Expect = 7.7 Identities = 19/51 (37%), Positives = 24/51 (47%) Frame = +3 Query: 72 LQCTRFVGLFILTRGNLAVSFASTLEACYSLGSILLCRSNECSIILLSCVS 224 LQ TR VGL + V+ T+E Y SILLC LSC++ Sbjct: 186 LQATRHVGLNSGYLSSYFVTHPETMEVIYEDASILLCNQ------ALSCLN 230
>LRP1B_MOUSE (Q9JI18) Low-density lipoprotein receptor-related protein 1B| precursor (Low-density lipoprotein receptor-related protein-deleted in tumor) (LRP-DIT) Length = 4599 Score = 27.7 bits (60), Expect = 7.7 Identities = 10/20 (50%), Positives = 12/20 (60%) Frame = +2 Query: 11 GCSELCLQVSSASDACKCQV 70 GCS+LCL S + C C V Sbjct: 1844 GCSQLCLPTSETTRTCMCTV 1863
>LRP1B_HUMAN (Q9NZR2) Low-density lipoprotein receptor-related protein 1B| precursor (Low-density lipoprotein receptor-related protein-deleted in tumor) (LRP-DIT) Length = 4599 Score = 27.7 bits (60), Expect = 7.7 Identities = 10/20 (50%), Positives = 12/20 (60%) Frame = +2 Query: 11 GCSELCLQVSSASDACKCQV 70 GCS+LCL S + C C V Sbjct: 1844 GCSQLCLPTSETTRTCMCTV 1863
>TRM1_DROME (Q9VK89) Probable N(2),N(2)-dimethylguanosine tRNA| methyltransferase (EC 2.1.1.32) (tRNA(guanine-26,N(2)-N(2)) methyltransferase) (tRNA 2,2-dimethylguanosine-26 methyltransferase) (tRNA(m(2,2)G26)dimethyltransferase) Length = 578 Score = 27.3 bits (59), Expect = 10.0 Identities = 19/54 (35%), Positives = 27/54 (50%), Gaps = 4/54 (7%) Frame = +3 Query: 72 LQCTRFVGLFILTRGNLAVSFASTLEACY-SLGSILL---CRSNECSIILLSCV 221 +QC GL ++T ++AV + EACY GS+ L C ILL C+ Sbjct: 193 MQCLVDGGLLLVTATDMAVLAGNAPEACYVKYGSVPLRMKCCHEMALRILLHCI 246
>NSD1_HUMAN (Q96L73) Histone-lysine N-methyltransferase, H3 lysine-36 and H4| lysine-20 specific (EC 2.1.1.43) (H3-K36-HMTase) (H4-K20-HMTase) (Nuclear receptor binding SET domain containing protein 1) (NR-binding SET domain containing protein) (Androgen r Length = 2696 Score = 27.3 bits (59), Expect = 10.0 Identities = 19/62 (30%), Positives = 24/62 (38%) Frame = +3 Query: 45 PPMPASVKCLQCTRFVGLFILTRGNLAVSFASTLEACYSLGSILLCRSNECSIILLSCVS 224 P MPAS K RG A + + C LG +LLC + C L C+ Sbjct: 1523 PGMPASKKMQG----------ERGGGAALKENVCQNCEKLGELLLCEAQCCGAFHLECLG 1572 Query: 225 *T 230 T Sbjct: 1573 LT 1574
>DML3_ARATH (O49498) DEMETER-like protein 3| Length = 1044 Score = 27.3 bits (59), Expect = 10.0 Identities = 12/23 (52%), Positives = 15/23 (65%) Frame = -2 Query: 229 VYETQDNNIILHSFERQSNMDPS 161 VY DN+ +LH FER+ DPS Sbjct: 855 VYVLPDNHELLHDFERRKLDDPS 877
>CAC1C_RABIT (P15381) Voltage-dependent L-type calcium channel alpha-1C subunit| (Voltage-gated calcium channel alpha subunit Cav1.2) (Calcium channel, L type, alpha-1 polypeptide, isoform 1, cardiac muscle) (Smooth muscle calcium channel blocker receptor) Length = 2171 Score = 27.3 bits (59), Expect = 10.0 Identities = 15/44 (34%), Positives = 25/44 (56%), Gaps = 2/44 (4%) Frame = +3 Query: 54 PASVKCLQCTRFVGLFILTR--GNLAVSFASTLEACYSLGSILL 179 P + L+C R + +F +TR +L+ AS L + S+ S+LL Sbjct: 643 PLGISVLRCVRLLRIFKITRYWNSLSNLVASLLNSVRSIASLLL 686
>CAC1C_MOUSE (Q01815) Voltage-dependent L-type calcium channel alpha-1C subunit| (Voltage-gated calcium channel alpha subunit Cav1.2) (Calcium channel, L type, alpha-1 polypeptide, isoform 1, cardiac muscle) (Mouse brain class C) (MBC) (MELC-CC) Length = 2139 Score = 27.3 bits (59), Expect = 10.0 Identities = 15/44 (34%), Positives = 25/44 (56%), Gaps = 2/44 (4%) Frame = +3 Query: 54 PASVKCLQCTRFVGLFILTR--GNLAVSFASTLEACYSLGSILL 179 P + L+C R + +F +TR +L+ AS L + S+ S+LL Sbjct: 613 PLGISVLRCVRLLRIFKITRYWNSLSNLVASLLNSVRSIASLLL 656
>FOG2_HUMAN (Q8WW38) Zinc finger protein ZFPM2 (Zinc finger protein multitype| 2) (Friend of GATA protein 2) (FOG-2) (hFOG-2) Length = 1151 Score = 27.3 bits (59), Expect = 10.0 Identities = 13/35 (37%), Positives = 20/35 (57%) Frame = +1 Query: 25 LPASVKCLRCLQVSSASNVHASLACLSLLVEIWLS 129 L S+ +C+ VS H+S++CL + V I LS Sbjct: 799 LETSLTINKCVPVSKCDTTHSSVSCLEMDVPIDLS 833
>FTSH_SHIFL (P0AAI4) Cell division protein ftsH (EC 3.4.24.-)| Length = 644 Score = 27.3 bits (59), Expect = 10.0 Identities = 14/57 (24%), Positives = 27/57 (47%) Frame = -2 Query: 226 YETQDNNIILHSFERQSNMDPSE*HASKVDAKLTAKFPRVRINKPTKRVHWRHLTLA 56 +E + I++ + R +DP+ + D ++ P VR + +VH R + LA Sbjct: 285 FEGNEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLA 341
>FTSH_SALTY (P63343) Cell division protease ftsH (EC 3.4.24.-)| Length = 644 Score = 27.3 bits (59), Expect = 10.0 Identities = 14/57 (24%), Positives = 27/57 (47%) Frame = -2 Query: 226 YETQDNNIILHSFERQSNMDPSE*HASKVDAKLTAKFPRVRINKPTKRVHWRHLTLA 56 +E + I++ + R +DP+ + D ++ P VR + +VH R + LA Sbjct: 285 FEGNEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLA 341
>FTSH_SALTI (P63344) Cell division protease ftsH (EC 3.4.24.-)| Length = 644 Score = 27.3 bits (59), Expect = 10.0 Identities = 14/57 (24%), Positives = 27/57 (47%) Frame = -2 Query: 226 YETQDNNIILHSFERQSNMDPSE*HASKVDAKLTAKFPRVRINKPTKRVHWRHLTLA 56 +E + I++ + R +DP+ + D ++ P VR + +VH R + LA Sbjct: 285 FEGNEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLA 341
>FTSH_ECOLI (P0AAI3) Cell division protein ftsH (EC 3.4.24.-)| Length = 644 Score = 27.3 bits (59), Expect = 10.0 Identities = 14/57 (24%), Positives = 27/57 (47%) Frame = -2 Query: 226 YETQDNNIILHSFERQSNMDPSE*HASKVDAKLTAKFPRVRINKPTKRVHWRHLTLA 56 +E + I++ + R +DP+ + D ++ P VR + +VH R + LA Sbjct: 285 FEGNEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLA 341
>FTSH_ECO57 (Q8X9L0) Cell division protease ftsH (EC 3.4.24.-)| Length = 644 Score = 27.3 bits (59), Expect = 10.0 Identities = 14/57 (24%), Positives = 27/57 (47%) Frame = -2 Query: 226 YETQDNNIILHSFERQSNMDPSE*HASKVDAKLTAKFPRVRINKPTKRVHWRHLTLA 56 +E + I++ + R +DP+ + D ++ P VR + +VH R + LA Sbjct: 285 FEGNEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLA 341
>CAC1C_HUMAN (Q13936) Voltage-dependent L-type calcium channel alpha-1C subunit| (Voltage-gated calcium channel alpha subunit Cav1.2) (Calcium channel, L type, alpha-1 polypeptide, isoform 1, cardiac muscle) Length = 2221 Score = 27.3 bits (59), Expect = 10.0 Identities = 15/44 (34%), Positives = 25/44 (56%), Gaps = 2/44 (4%) Frame = +3 Query: 54 PASVKCLQCTRFVGLFILTR--GNLAVSFASTLEACYSLGSILL 179 P + L+C R + +F +TR +L+ AS L + S+ S+LL Sbjct: 613 PLGISVLRCVRLLRIFKITRYWNSLSNLVASLLNSVRSIASLLL 656 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 43,488,316 Number of Sequences: 219361 Number of extensions: 759485 Number of successful extensions: 2092 Number of sequences better than 10.0: 35 Number of HSP's better than 10.0 without gapping: 2040 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2092 length of database: 80,573,946 effective HSP length: 78 effective length of database: 63,463,788 effective search space used: 1523130912 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
