Clone Information

BLAST Search Result

Clone Name	baak4h03
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	ref\|NM_192031.1\| Oryza sativa (japonica cultivar-group), predic...	365	1e-97
2	dbj\|AK120629.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	365	1e-97
3	dbj\|AK063019.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	365	1e-97
4	gb\|AY106215.1\| Zea mays PCO086004 mRNA sequence	280	5e-72
5	dbj\|AP008207.1\| Oryza sativa (japonica cultivar-group) genomic D...	248	2e-62
6	dbj\|AP003335.4\| Oryza sativa (japonica cultivar-group) genomic D...	248	2e-62
7	dbj\|AK062194.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	192	1e-45
8	dbj\|AK071536.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	125	2e-25
9	gb\|AC007005.3\| Homo sapiens BAC clone RP11-532N23 from 2, comple...	50	0.009
10	gb\|AY149909.1\| Mastigamoeba balamuthi malate dehydrogenase gene,...	44	0.55
11	gb\|AC140724.4\| Mus musculus chromosome 8, clone RP24-291N1, comp...	42	2.2
12	gb\|AC134323.3\| Mus musculus BAC clone RP24-512P7 from chromosome...	42	2.2
13	emb\|Z86063.2\|HS410B11 Human DNA sequence from clone RP3-410B11 o...	42	2.2
14	gb\|DQ366743.1\| Uncultured Prochlorococcus marinus clone HOT0M-8F...	42	2.2
15	emb\|AL939122.1\|SCO939122 Streptomyces coelicolor A3(2) complete ...	42	2.2
16	gb\|AC010051.9\| Drosophila melanogaster 3L BAC RP98-3J2 (Roswell ...	42	2.2
17	gb\|AC010055.6\| Drosophila melanogaster 3L BAC RP98-24H3 (Roswell...	42	2.2
18	dbj\|AK165756.1\| Mus musculus 15 days embryo brain cDNA, RIKEN fu...	42	2.2
19	dbj\|BA000030.2\| Streptomyces avermitilis MA-4680 genomic DNA, co...	42	2.2
20	gb\|AC157520.2\| Mus musculus BAC clone RP23-229N21 from 6, comple...	42	2.2
21	gb\|AE003593.2\| Drosophila melanogaster chromosome 3L, section 74...	42	2.2
22	gb\|AC151602.4\| Mus musculus BAC clone RP23-218K15 from chromosom...	42	2.2
23	gb\|AC152495.1\| Zea mays BAC clone Z486N13, complete sequence	40	8.6
24	gb\|AC166346.5\| Mus musculus BAC clone RP24-83P13 from chromosome...	40	8.6
25	gb\|AC166832.2\| Mus musculus BAC clone RP23-220N17 from chromosom...	40	8.6
26	gb\|AC093353.11\| Mus musculus chromosome 10, clone RP23-19C22, co...	40	8.6
27	gb\|AC111060.5\| Mus musculus chromosome 1, clone RP24-121I5, comp...	40	8.6
28	ref\|XM_425695.1\| PREDICTED: Gallus gallus similar to mannosidase...	40	8.6
29	gb\|DQ486867.1\| Conus marmoreus protein disulfide isomerase (MrPD...	40	8.6
30	gb\|AY286122.1\| Cyanidioschyzon merolae DBV201 chromosome 1, comp...	40	8.6
31	gb\|AC124585.3\| Mus musculus BAC clone RP23-130P17 from chromosom...	40	8.6
32	emb\|AL356750.16\| Human DNA sequence from clone RP11-374F3 on chr...	40	8.6
33	emb\|AL353671.6\| Human DNA sequence from clone RP11-205M20 on chr...	40	8.6
34	gb\|AC159656.11\| Mus musculus 6 BAC RP24-85F2 (Roswell Park Cance...	40	8.6
35	gb\|AC099543.2\| Homo sapiens chromosome 3 clone RP11-554B20, comp...	40	8.6
36	gb\|AC091805.16\| Homo sapiens 12p BAC RP11-841C19 (Roswell Park C...	40	8.6
37	gb\|AC098680.3\| Homo sapiens BAC clone RP11-600L4 from 4, complet...	40	8.6
38	gb\|AC157954.2\| Pan troglodytes BAC clone CH251-514O14 from chrom...	40	8.6
39	gb\|AC154645.3\| Mus musculus BAC clone RP23-282G11 from chromosom...	40	8.6
40	gb\|AC132373.4\| Mus musculus BAC clone RP23-480H8 from 1, complet...	40	8.6
41	gb\|AC122506.4\| Mus musculus BAC clone RP24-426J4 from 15, comple...	40	8.6
42	gb\|AC122263.5\| Mus musculus BAC clone RP23-190O11 from 15, compl...	40	8.6
43	gb\|AC152950.2\| Mus musculus 10 BAC RP23-138J18 (Roswell Park Can...	40	8.6

>ref|NM_192031.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 591

 Score =  365 bits (184), Expect = 1e-97
 Identities = 286/320 (89%)
 Strand = Plus / Plus

                                                                       
Query: 119 ccggactcggtgaagaagagggagcgccagaatgacagacaccgcattcgcaaccatgcc 178
           ||||||||||| |||||||||||||| ||||| ||| | |||||||| ||||||||||| 
Sbjct: 262 ccggactcggtcaagaagagggagcggcagaacgaccggcaccgcatccgcaaccatgca 321

                                                                       
Query: 179 cgcaaggccgagatgcgcacccggatgaagaaggttttcagagcccttgaaaagcttcgg 238
           ||||||||||||||||||||| |||||||||||||||| | |||||||||||||||  | 
Sbjct: 322 cgcaaggccgagatgcgcaccaggatgaagaaggttttgaaagcccttgaaaagctgaga 381

                                                                       
Query: 239 aagaaagccgatgcccaacctgaagaaatcattgaaatagagaaaatgatctctgaggca 298
           |||||||| ||||||  ||||||||| |||||| |||||||||||  ||| |||||||||
Sbjct: 382 aagaaagctgatgccacacctgaagatatcattcaaatagagaaatggatttctgaggca 441

                                                                       
Query: 299 tacaaagccatcgacaagacagtgaaggttggcgccatgcacaggaatactggagatcat 358
           ||||||||||| |||||||||||||||||||||||||||||||||||||||||  | |||
Sbjct: 442 tacaaagccattgacaagacagtgaaggttggcgccatgcacaggaatactggtaaccat 501

                                                                       
Query: 359 cgcaagtccaggcttgcaaggaggaagaaggccattgagataattcgtggttggtatgtt 418
           |||||||||   ||||| ||||||||||||||||| |||||| | |||||||||||||||
Sbjct: 502 cgcaagtcccttcttgcgaggaggaagaaggccatcgagatactccgtggttggtatgtt 561

                               
Query: 419 ccgaatgctgaacctgctgc 438
           || || ||||||||||||||
Sbjct: 562 ccaaacgctgaacctgctgc 581



 Score = 63.9 bits (32), Expect = 6e-07
 Identities = 44/48 (91%)
 Strand = Plus / Plus

                                                           
Query: 42  cggcgtcgacggggaggttgaggaggagggggctgcaggtggtgtgcg 89
           |||||||| ||||||||| |||||||||||| ||| ||||||||||||
Sbjct: 179 cggcgtcgtcggggaggtggaggaggaggggactggaggtggtgtgcg 226



 Score = 60.0 bits (30), Expect = 9e-06
 Identities = 33/34 (97%)
 Strand = Plus / Plus

                                             
Query: 3   cctcctacgccgccttccccatcggtgggttcgg 36
           ||||||||||||||||||||||||||||| ||||
Sbjct: 125 cctcctacgccgccttccccatcggtgggatcgg 158

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>dbj|AK120629.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013153D21, full
           insert sequence
          Length = 915

 Score =  365 bits (184), Expect = 1e-97
 Identities = 286/320 (89%)
 Strand = Plus / Plus

                                                                       
Query: 119 ccggactcggtgaagaagagggagcgccagaatgacagacaccgcattcgcaaccatgcc 178
           ||||||||||| |||||||||||||| ||||| ||| | |||||||| ||||||||||| 
Sbjct: 297 ccggactcggtcaagaagagggagcggcagaacgaccggcaccgcatccgcaaccatgca 356

                                                                       
Query: 179 cgcaaggccgagatgcgcacccggatgaagaaggttttcagagcccttgaaaagcttcgg 238
           ||||||||||||||||||||| |||||||||||||||| | |||||||||||||||  | 
Sbjct: 357 cgcaaggccgagatgcgcaccaggatgaagaaggttttgaaagcccttgaaaagctgaga 416

                                                                       
Query: 239 aagaaagccgatgcccaacctgaagaaatcattgaaatagagaaaatgatctctgaggca 298
           |||||||| ||||||  ||||||||| |||||| |||||||||||  ||| |||||||||
Sbjct: 417 aagaaagctgatgccacacctgaagatatcattcaaatagagaaatggatttctgaggca 476

                                                                       
Query: 299 tacaaagccatcgacaagacagtgaaggttggcgccatgcacaggaatactggagatcat 358
           ||||||||||| |||||||||||||||||||||||||||||||||||||||||  | |||
Sbjct: 477 tacaaagccattgacaagacagtgaaggttggcgccatgcacaggaatactggtaaccat 536

                                                                       
Query: 359 cgcaagtccaggcttgcaaggaggaagaaggccattgagataattcgtggttggtatgtt 418
           |||||||||   ||||| ||||||||||||||||| |||||| | |||||||||||||||
Sbjct: 537 cgcaagtcccttcttgcgaggaggaagaaggccatcgagatactccgtggttggtatgtt 596

                               
Query: 419 ccgaatgctgaacctgctgc 438
           || || ||||||||||||||
Sbjct: 597 ccaaacgctgaacctgctgc 616



 Score = 63.9 bits (32), Expect = 6e-07
 Identities = 44/48 (91%)
 Strand = Plus / Plus

                                                           
Query: 42  cggcgtcgacggggaggttgaggaggagggggctgcaggtggtgtgcg 89
           |||||||| ||||||||| |||||||||||| ||| ||||||||||||
Sbjct: 214 cggcgtcgtcggggaggtggaggaggaggggactggaggtggtgtgcg 261



 Score = 60.0 bits (30), Expect = 9e-06
 Identities = 33/34 (97%)
 Strand = Plus / Plus

                                             
Query: 3   cctcctacgccgccttccccatcggtgggttcgg 36
           ||||||||||||||||||||||||||||| ||||
Sbjct: 160 cctcctacgccgccttccccatcggtgggatcgg 193



 Score = 40.1 bits (20), Expect = 8.6
 Identities = 27/28 (96%), Gaps = 1/28 (3%)
 Strand = Plus / Plus

                                       
Query: 499 tcttgccaattttggaca-gcatatgtt 525
           |||||||||||||||||| |||||||||
Sbjct: 678 tcttgccaattttggacatgcatatgtt 705

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>dbj|AK063019.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-110-B01, full
           insert sequence
          Length = 727

 Score =  365 bits (184), Expect = 1e-97
 Identities = 286/320 (89%)
 Strand = Plus / Plus

                                                                       
Query: 119 ccggactcggtgaagaagagggagcgccagaatgacagacaccgcattcgcaaccatgcc 178
           ||||||||||| |||||||||||||| ||||| ||| | |||||||| ||||||||||| 
Sbjct: 294 ccggactcggtcaagaagagggagcggcagaacgaccggcaccgcatccgcaaccatgca 353

                                                                       
Query: 179 cgcaaggccgagatgcgcacccggatgaagaaggttttcagagcccttgaaaagcttcgg 238
           ||||||||||||||||||||| |||||||||||||||| | |||||||||||||||  | 
Sbjct: 354 cgcaaggccgagatgcgcaccaggatgaagaaggttttgaaagcccttgaaaagctgaga 413

                                                                       
Query: 239 aagaaagccgatgcccaacctgaagaaatcattgaaatagagaaaatgatctctgaggca 298
           |||||||| ||||||  ||||||||| |||||| |||||||||||  ||| |||||||||
Sbjct: 414 aagaaagctgatgccacacctgaagatatcattcaaatagagaaatggatttctgaggca 473

                                                                       
Query: 299 tacaaagccatcgacaagacagtgaaggttggcgccatgcacaggaatactggagatcat 358
           ||||||||||| |||||||||||||||||||||||||||||||||||||||||  | |||
Sbjct: 474 tacaaagccattgacaagacagtgaaggttggcgccatgcacaggaatactggtaaccat 533

                                                                       
Query: 359 cgcaagtccaggcttgcaaggaggaagaaggccattgagataattcgtggttggtatgtt 418
           |||||||||   ||||| ||||||||||||||||| |||||| | |||||||||||||||
Sbjct: 534 cgcaagtcccttcttgcgaggaggaagaaggccatcgagatactccgtggttggtatgtt 593

                               
Query: 419 ccgaatgctgaacctgctgc 438
           || || ||||||||||||||
Sbjct: 594 ccaaacgctgaacctgctgc 613



 Score = 63.9 bits (32), Expect = 6e-07
 Identities = 44/48 (91%)
 Strand = Plus / Plus

                                                           
Query: 42  cggcgtcgacggggaggttgaggaggagggggctgcaggtggtgtgcg 89
           |||||||| ||||||||| |||||||||||| ||| ||||||||||||
Sbjct: 211 cggcgtcgtcggggaggtggaggaggaggggactggaggtggtgtgcg 258



 Score = 60.0 bits (30), Expect = 9e-06
 Identities = 33/34 (97%)
 Strand = Plus / Plus

                                             
Query: 3   cctcctacgccgccttccccatcggtgggttcgg 36
           ||||||||||||||||||||||||||||| ||||
Sbjct: 157 cctcctacgccgccttccccatcggtgggatcgg 190



 Score = 40.1 bits (20), Expect = 8.6
 Identities = 27/28 (96%), Gaps = 1/28 (3%)
 Strand = Plus / Plus

                                       
Query: 499 tcttgccaattttggaca-gcatatgtt 525
           |||||||||||||||||| |||||||||
Sbjct: 675 tcttgccaattttggacatgcatatgtt 702

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>gb|AY106215.1| Zea mays PCO086004 mRNA sequence
          Length = 859

 Score =  280 bits (141), Expect = 5e-72
 Identities = 273/317 (86%)
 Strand = Plus / Plus

                                                                       
Query: 118 gccggactcggtgaagaagagggagcgccagaatgacagacaccgcattcgcaaccatgc 177
           |||||||||||| |||||||||||||||||||| ||||  |||||||| ||||| || ||
Sbjct: 368 gccggactcggttaagaagagggagcgccagaacgacaagcaccgcatccgcaatcacgc 427

                                                                       
Query: 178 ccgcaaggccgagatgcgcacccggatgaagaaggttttcagagcccttgaaaagcttcg 237
            ||||||||||||||||||||  ||||||| ||||| || ||||| |||||||||||| |
Sbjct: 428 gcgcaaggccgagatgcgcactaggatgaaaaaggtcttaagagctcttgaaaagcttag 487

                                                                       
Query: 238 gaagaaagccgatgcccaacctgaagaaatcattgaaatagagaaaatgatctctgaggc 297
           ||||||| | || || || ||||||||||| ||||| ||||||||  ||||| |||||||
Sbjct: 488 gaagaaacctgacgcgcagcctgaagaaataattgagatagagaagctgatcgctgaggc 547

                                                                       
Query: 298 atacaaagccatcgacaagacagtgaaggttggcgccatgcacaggaatactggagatca 357
           ||||||||||||||||||||| |||||||||||||||||||| ||||| || |   | ||
Sbjct: 548 atacaaagccatcgacaagacggtgaaggttggcgccatgcataggaacacggcgaacca 607

                                                                       
Query: 358 tcgcaagtccaggcttgcaaggaggaagaaggccattgagataattcgtggttggtatgt 417
           ||| |||||  | || |||||||||||||||||||| |||||| | ||||||||||||||
Sbjct: 608 tcggaagtctcgactggcaaggaggaagaaggccatcgagatactccgtggttggtatgt 667

                            
Query: 418 tccgaatgctgaacctg 434
            || || ||||||||||
Sbjct: 668 cccaaacgctgaacctg 684

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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score =  248 bits (125), Expect = 2e-62
 Identities = 203/229 (88%)
 Strand = Plus / Plus

                                                                            
Query: 210      aggttttcagagcccttgaaaagcttcggaagaaagccgatgcccaacctgaagaaatca 269
                ||||||| | |||||||||||||||  | |||||||| ||||||  ||||||||| ||||
Sbjct: 27917067 aggttttgaaagcccttgaaaagctgagaaagaaagctgatgccacacctgaagatatca 27917126

                                                                            
Query: 270      ttgaaatagagaaaatgatctctgaggcatacaaagccatcgacaagacagtgaaggttg 329
                || |||||||||||  ||| |||||||||||||||||||| |||||||||||||||||||
Sbjct: 27917127 ttcaaatagagaaatggatttctgaggcatacaaagccattgacaagacagtgaaggttg 27917186

                                                                            
Query: 330      gcgccatgcacaggaatactggagatcatcgcaagtccaggcttgcaaggaggaagaagg 389
                ||||||||||||||||||||||  | ||||||||||||   ||||| |||||||||||||
Sbjct: 27917187 gcgccatgcacaggaatactggtaaccatcgcaagtcccttcttgcgaggaggaagaagg 27917246

                                                                 
Query: 390      ccattgagataattcgtggttggtatgttccgaatgctgaacctgctgc 438
                |||| |||||| | ||||||||||||||||| || ||||||||||||||
Sbjct: 27917247 ccatcgagatactccgtggttggtatgttccaaacgctgaacctgctgc 27917295



 Score =  125 bits (63), Expect = 2e-25
 Identities = 87/95 (91%)
 Strand = Plus / Plus

                                                                            
Query: 119      ccggactcggtgaagaagagggagcgccagaatgacagacaccgcattcgcaaccatgcc 178
                ||||||||||| |||||||||||||| ||||| ||| | |||||||| ||||||||||| 
Sbjct: 27915950 ccggactcggtcaagaagagggagcggcagaacgaccggcaccgcatccgcaaccatgca 27916009

                                                   
Query: 179      cgcaaggccgagatgcgcacccggatgaagaaggt 213
                ||||||||||||||||||||| |||||||||||||
Sbjct: 27916010 cgcaaggccgagatgcgcaccaggatgaagaaggt 27916044



 Score = 63.9 bits (32), Expect = 6e-07
 Identities = 44/48 (91%)
 Strand = Plus / Plus

                                                                
Query: 42       cggcgtcgacggggaggttgaggaggagggggctgcaggtggtgtgcg 89
                |||||||| ||||||||| |||||||||||| ||| ||||||||||||
Sbjct: 27915867 cggcgtcgtcggggaggtggaggaggaggggactggaggtggtgtgcg 27915914



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 26/26 (100%)
 Strand = Plus / Plus

                                          
Query: 3        cctcctacgccgccttccccatcggt 28
                ||||||||||||||||||||||||||
Sbjct: 27915732 cctcctacgccgccttccccatcggt 27915757



 Score = 40.1 bits (20), Expect = 8.6
 Identities = 27/28 (96%), Gaps = 1/28 (3%)
 Strand = Plus / Plus

                                            
Query: 499      tcttgccaattttggaca-gcatatgtt 525
                |||||||||||||||||| |||||||||
Sbjct: 27917357 tcttgccaattttggacatgcatatgtt 27917384

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>dbj|AP003335.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
              clone:B1144G04
          Length = 194459

 Score =  248 bits (125), Expect = 2e-62
 Identities = 203/229 (88%)
 Strand = Plus / Plus

                                                                          
Query: 210    aggttttcagagcccttgaaaagcttcggaagaaagccgatgcccaacctgaagaaatca 269
              ||||||| | |||||||||||||||  | |||||||| ||||||  ||||||||| ||||
Sbjct: 103748 aggttttgaaagcccttgaaaagctgagaaagaaagctgatgccacacctgaagatatca 103807

                                                                          
Query: 270    ttgaaatagagaaaatgatctctgaggcatacaaagccatcgacaagacagtgaaggttg 329
              || |||||||||||  ||| |||||||||||||||||||| |||||||||||||||||||
Sbjct: 103808 ttcaaatagagaaatggatttctgaggcatacaaagccattgacaagacagtgaaggttg 103867

                                                                          
Query: 330    gcgccatgcacaggaatactggagatcatcgcaagtccaggcttgcaaggaggaagaagg 389
              ||||||||||||||||||||||  | ||||||||||||   ||||| |||||||||||||
Sbjct: 103868 gcgccatgcacaggaatactggtaaccatcgcaagtcccttcttgcgaggaggaagaagg 103927

                                                               
Query: 390    ccattgagataattcgtggttggtatgttccgaatgctgaacctgctgc 438
              |||| |||||| | ||||||||||||||||| || ||||||||||||||
Sbjct: 103928 ccatcgagatactccgtggttggtatgttccaaacgctgaacctgctgc 103976



 Score =  125 bits (63), Expect = 2e-25
 Identities = 87/95 (91%)
 Strand = Plus / Plus

                                                                          
Query: 119    ccggactcggtgaagaagagggagcgccagaatgacagacaccgcattcgcaaccatgcc 178
              ||||||||||| |||||||||||||| ||||| ||| | |||||||| ||||||||||| 
Sbjct: 102631 ccggactcggtcaagaagagggagcggcagaacgaccggcaccgcatccgcaaccatgca 102690

                                                 
Query: 179    cgcaaggccgagatgcgcacccggatgaagaaggt 213
              ||||||||||||||||||||| |||||||||||||
Sbjct: 102691 cgcaaggccgagatgcgcaccaggatgaagaaggt 102725



 Score = 63.9 bits (32), Expect = 6e-07
 Identities = 44/48 (91%)
 Strand = Plus / Plus

                                                              
Query: 42     cggcgtcgacggggaggttgaggaggagggggctgcaggtggtgtgcg 89
              |||||||| ||||||||| |||||||||||| ||| ||||||||||||
Sbjct: 102548 cggcgtcgtcggggaggtggaggaggaggggactggaggtggtgtgcg 102595



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 26/26 (100%)
 Strand = Plus / Plus

                                        
Query: 3      cctcctacgccgccttccccatcggt 28
              ||||||||||||||||||||||||||
Sbjct: 102413 cctcctacgccgccttccccatcggt 102438



 Score = 40.1 bits (20), Expect = 8.6
 Identities = 27/28 (96%), Gaps = 1/28 (3%)
 Strand = Plus / Plus

                                          
Query: 499    tcttgccaattttggaca-gcatatgtt 525
              |||||||||||||||||| |||||||||
Sbjct: 104038 tcttgccaattttggacatgcatatgtt 104065

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>dbj|AK062194.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-046-F06, full
           insert sequence
          Length = 455

 Score =  192 bits (97), Expect = 1e-45
 Identities = 136/149 (91%)
 Strand = Plus / Plus

                                                                       
Query: 290 tctgaggcatacaaagccatcgacaagacagtgaaggttggcgccatgcacaggaatact 349
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 13  tctgaggcatacaaagccattgacaagacagtgaaggttggcgccatgcacaggaatact 72

                                                                       
Query: 350 ggagatcatcgcaagtccaggcttgcaaggaggaagaaggccattgagataattcgtggt 409
           ||  | ||||||||||||   ||||| ||||||||||||||||| |||||| | ||||||
Sbjct: 73  ggtaaccatcgcaagtcccttcttgcgaggaggaagaaggccatcgagatactccgtggt 132

                                        
Query: 410 tggtatgttccgaatgctgaacctgctgc 438
           ||||||||||| || ||||||||||||||
Sbjct: 133 tggtatgttccaaacgctgaacctgctgc 161



 Score = 40.1 bits (20), Expect = 8.6
 Identities = 27/28 (96%), Gaps = 1/28 (3%)
 Strand = Plus / Plus

                                       
Query: 499 tcttgccaattttggaca-gcatatgtt 525
           |||||||||||||||||| |||||||||
Sbjct: 223 tcttgccaattttggacatgcatatgtt 250

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>dbj|AK071536.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023101N15, full
           insert sequence
          Length = 651

 Score =  125 bits (63), Expect = 2e-25
 Identities = 87/95 (91%)
 Strand = Plus / Plus

                                                                       
Query: 119 ccggactcggtgaagaagagggagcgccagaatgacagacaccgcattcgcaaccatgcc 178
           ||||||||||| |||||||||||||| ||||| ||| | |||||||| ||||||||||| 
Sbjct: 163 ccggactcggtcaagaagagggagcggcagaacgaccggcaccgcatccgcaaccatgca 222

                                              
Query: 179 cgcaaggccgagatgcgcacccggatgaagaaggt 213
           ||||||||||||||||||||| |||||||||||||
Sbjct: 223 cgcaaggccgagatgcgcaccaggatgaagaaggt 257



 Score = 63.9 bits (32), Expect = 6e-07
 Identities = 44/48 (91%)
 Strand = Plus / Plus

                                                           
Query: 42  cggcgtcgacggggaggttgaggaggagggggctgcaggtggtgtgcg 89
           |||||||| ||||||||| |||||||||||| ||| ||||||||||||
Sbjct: 80  cggcgtcgtcggggaggtggaggaggaggggactggaggtggtgtgcg 127

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>gb|AC007005.3| Homo sapiens BAC clone RP11-532N23 from 2, complete sequence
          Length = 167776

 Score = 50.1 bits (25), Expect = 0.009
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                       
Query: 376    aaggaggaagaaggccattgagata 400
              |||||||||||||||||||||||||
Sbjct: 166084 aaggaggaagaaggccattgagata 166108

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>gb|AY149909.1| Mastigamoeba balamuthi malate dehydrogenase gene, complete cds
          Length = 2151

 Score = 44.1 bits (22), Expect = 0.55
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 40   ctcggcgtcgacggggaggttg 61
            ||||||||||||||||||||||
Sbjct: 1871 ctcggcgtcgacggggaggttg 1850

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>gb|AC140724.4| Mus musculus chromosome 8, clone RP24-291N1, complete sequence
          Length = 159182

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 273   aaatagagaaaatgatctctg 293
             |||||||||||||||||||||
Sbjct: 55417 aaatagagaaaatgatctctg 55397

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>gb|AC134323.3| Mus musculus BAC clone RP24-512P7 from chromosome 8, complete sequence
          Length = 176667

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 273    aaatagagaaaatgatctctg 293
              |||||||||||||||||||||
Sbjct: 175077 aaatagagaaaatgatctctg 175097

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>emb|Z86063.2|HS410B11 Human DNA sequence from clone RP3-410B11 on chromosome Xp22.11-22.2
             Contains the 3' end of a novel gene, complete sequence
          Length = 58498

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 377   aggaggaagaaggccattgag 397
             |||||||||||||||||||||
Sbjct: 13775 aggaggaagaaggccattgag 13755

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>gb|DQ366743.1| Uncultured Prochlorococcus marinus clone HOT0M-8F9 genomic sequence
          Length = 27928

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 259   tgaagaaatcattgaaataga 279
             |||||||||||||||||||||
Sbjct: 18668 tgaagaaatcattgaaataga 18648

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>emb|AL939122.1|SCO939122 Streptomyces coelicolor A3(2) complete genome; segment 19/29
          Length = 311000

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 79     ggtggtgtgcgccgccgagccgccc 103
              ||||||| |||||||||||||||||
Sbjct: 204669 ggtggtgcgcgccgccgagccgccc 204693

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>gb|AC010051.9| Drosophila melanogaster 3L BAC RP98-3J2 (Roswell Park Cancer
            Institute Drosophila BAC Library) complete sequence
          Length = 184424

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 148  gaatgacagacaccgcattcg 168
            |||||||||||||||||||||
Sbjct: 7380 gaatgacagacaccgcattcg 7400

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>gb|AC010055.6| Drosophila melanogaster 3L BAC RP98-24H3 (Roswell Park Cancer Institute
              Drosophila BAC Library) complete sequence
          Length = 163098

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 148    gaatgacagacaccgcattcg 168
              |||||||||||||||||||||
Sbjct: 144076 gaatgacagacaccgcattcg 144096

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>dbj|AK165756.1| Mus musculus 15 days embryo brain cDNA, RIKEN full-length enriched
           library, clone:G630055J19 product:unclassifiable, full
           insert sequence
          Length = 3668

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 63  ggaggagggggctgcaggtggtgtg 87
           ||||||||||| |||||||||||||
Sbjct: 822 ggaggaggggggtgcaggtggtgtg 846

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>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome
          Length = 9025608

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                        
Query: 79      ggtggtgtgcgccgccgagccgccc 103
               ||||||| |||||||||||||||||
Sbjct: 3910520 ggtggtgcgcgccgccgagccgccc 3910496

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>gb|AC157520.2| Mus musculus BAC clone RP23-229N21 from 6, complete sequence
          Length = 196037

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 260    gaagaaatcattgaaatagagaaaa 284
              |||||||||||||| ||||||||||
Sbjct: 166857 gaagaaatcattgacatagagaaaa 166833

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>gb|AE003593.2| Drosophila melanogaster chromosome 3L, section 74 of 83 of the complete
              sequence
          Length = 313157

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 148    gaatgacagacaccgcattcg 168
              |||||||||||||||||||||
Sbjct: 141301 gaatgacagacaccgcattcg 141281

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>gb|AC151602.4| Mus musculus BAC clone RP23-218K15 from chromosome 7, complete sequence
          Length = 249504

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 63     ggaggagggggctgcaggtggtgtg 87
              ||||||||||| |||||||||||||
Sbjct: 224320 ggaggaggggggtgcaggtggtgtg 224344

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>gb|AC152495.1| Zea mays BAC clone Z486N13, complete sequence
          Length = 169348

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                            
Query: 42   cggcgtcgacggggaggttgaggaggaggggg 73
            ||||||||||| |||||  |||||||||||||
Sbjct: 1667 cggcgtcgacgaggaggacgaggaggaggggg 1636

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>gb|AC166346.5| Mus musculus BAC clone RP24-83P13 from chromosome 16, complete sequence
          Length = 199678

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 54     ggaggttgaggaggaggggg 73
              ||||||||||||||||||||
Sbjct: 104849 ggaggttgaggaggaggggg 104830

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>gb|AC166832.2| Mus musculus BAC clone RP23-220N17 from chromosome 16, complete sequence
          Length = 172644

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 54     ggaggttgaggaggaggggg 73
              ||||||||||||||||||||
Sbjct: 135586 ggaggttgaggaggaggggg 135567

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>gb|AC093353.11| Mus musculus chromosome 10, clone RP23-19C22, complete sequence
          Length = 188921

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 256   acctgaagaaatcattgaaataga 279
             ||||||||||| ||||||||||||
Sbjct: 54474 acctgaagaaaacattgaaataga 54497

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>gb|AC111060.5| Mus musculus chromosome 1, clone RP24-121I5, complete sequence
          Length = 138419

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 471   aaattgcagcagcttttctt 490
             ||||||||||||||||||||
Sbjct: 15039 aaattgcagcagcttttctt 15020

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>ref|XM_425695.1| PREDICTED: Gallus gallus similar to mannosidase, beta A,
           lysosomal-like (LOC428138), mRNA
          Length = 987

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 61  gaggaggagggggctgcagg 80
           ||||||||||||||||||||
Sbjct: 298 gaggaggagggggctgcagg 279

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>gb|DQ486867.1| Conus marmoreus protein disulfide isomerase (MrPDI) mRNA, complete
           cds
          Length = 1742

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 47  tcgacggggaggttgaggaggagg 70
           ||||||||||| ||||||||||||
Sbjct: 647 tcgacggggagtttgaggaggagg 670

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>gb|AY286122.1| Cyanidioschyzon merolae DBV201 chromosome 1, complete sequence
          Length = 422021

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 424    tgctgaacctgctgcagctg 443
              ||||||||||||||||||||
Sbjct: 325144 tgctgaacctgctgcagctg 325163

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>gb|AC124585.3| Mus musculus BAC clone RP23-130P17 from chromosome 10, complete sequence
          Length = 198030

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 256    acctgaagaaatcattgaaataga 279
              ||||||||||| ||||||||||||
Sbjct: 167295 acctgaagaaaacattgaaataga 167318

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>emb|AL356750.16| Human DNA sequence from clone RP11-374F3 on chromosome 13 Contains the
             KATNAL1 gene for katanin p60 subunit A-like 1, a
             peroxiredoxin 2 (PRDX2) pseudogene, two novel genes and
             two CpG islands, complete sequence
          Length = 182303

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 260   gaagaaatcattgaaataga 279
             ||||||||||||||||||||
Sbjct: 26174 gaagaaatcattgaaataga 26193

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>emb|AL353671.6| Human DNA sequence from clone RP11-205M20 on chromosome 9 Contains the 5'
              end of the gene for DEAD/H (Asp-Glu-Ala-Asp/His) box
              polypeptide (RIG-I), the gene for tumor protein p53-binding
              protein (TP53BPL), a novel gene, a DNA fragmentation
              factor, 40kDa, beta polypeptide (caspase-activated DNase)
              (DFFB) (CAD, CPAN, DFF40) pseudogene, a novel gene
              (FLJ25547), the  NDUFB6 gene for NADH dehydrogenase
              (ubiquinone) 1 beta subcomplex, 6, 17kDa (B17), and a CpG
              island, complete sequence
          Length = 155585

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 375    caaggaggaagaaggccatt 394
              ||||||||||||||||||||
Sbjct: 134623 caaggaggaagaaggccatt 134604

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>gb|AC159656.11| Mus musculus 6 BAC RP24-85F2 (Roswell Park Cancer Institute (C57BL/6J
             Male) Mouse BAC Library) complete sequence
          Length = 205702

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 52    ggggaggttgaggaggaggg 71
             ||||||||||||||||||||
Sbjct: 35271 ggggaggttgaggaggaggg 35290

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>gb|AC099543.2| Homo sapiens chromosome 3 clone RP11-554B20, complete sequence
          Length = 156107

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 279   agaaaatgatctctgaggca 298
             ||||||||||||||||||||
Sbjct: 21748 agaaaatgatctctgaggca 21767

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>gb|AC091805.16| Homo sapiens 12p BAC RP11-841C19 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 177115

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 277    agagaaaatgatctctgagg 296
              ||||||||||||||||||||
Sbjct: 170671 agagaaaatgatctctgagg 170690

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>gb|AC098680.3| Homo sapiens BAC clone RP11-600L4 from 4, complete sequence
          Length = 180918

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 479   gcagcttttctttcatcaca 498
             ||||||||||||||||||||
Sbjct: 91700 gcagcttttctttcatcaca 91681

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>gb|AC157954.2| Pan troglodytes BAC clone CH251-514O14 from chromosome unknown, complete
              sequence
          Length = 210950

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 260    gaagaaatcattgaaataga 279
              ||||||||||||||||||||
Sbjct: 112541 gaagaaatcattgaaataga 112522

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>gb|AC154645.3| Mus musculus BAC clone RP23-282G11 from chromosome 9, complete sequence
          Length = 210202

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 447   agtttctgggggagttgtca 466
             ||||||||||||||||||||
Sbjct: 49752 agtttctgggggagttgtca 49771

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>gb|AC132373.4| Mus musculus BAC clone RP23-480H8 from 1, complete sequence
          Length = 192562

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 471   aaattgcagcagcttttctt 490
             ||||||||||||||||||||
Sbjct: 27045 aaattgcagcagcttttctt 27064

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>gb|AC122506.4| Mus musculus BAC clone RP24-426J4 from 15, complete sequence
          Length = 166555

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 476    gcagcagcttttctttcatc 495
              ||||||||||||||||||||
Sbjct: 166475 gcagcagcttttctttcatc 166494

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>gb|AC122263.5| Mus musculus BAC clone RP23-190O11 from 15, complete sequence
          Length = 207234

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 476    gcagcagcttttctttcatc 495
              ||||||||||||||||||||
Sbjct: 201494 gcagcagcttttctttcatc 201475

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>gb|AC152950.2| Mus musculus 10 BAC RP23-138J18 (Roswell Park Cancer Institute (C57BL/6J
              Female) Mouse BAC Library) complete sequence
          Length = 181465

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 262    agaaatcattgaaatagaga 281
              ||||||||||||||||||||
Sbjct: 106123 agaaatcattgaaatagaga 106142


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6,021,032
Number of Sequences: 3902068
Number of extensions: 6021032
Number of successful extensions: 140605
Number of sequences better than 10.0: 43
Number of HSP's better than 10.0 without gapping: 43
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 140373
Number of HSP's gapped (non-prelim): 232
length of query: 633
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 610
effective length of database: 17,143,297,704
effective search space: 10457411599440
effective search space used: 10457411599440
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result