>YB92_YEAST (P38331) Hypothetical 27.6 kDa protein in THI2-ALG7 intergenic|
           region
          Length = 238

 Score =  116 bits (291), Expect = 3e-26
 Identities = 60/132 (45%), Positives = 88/132 (66%), Gaps = 5/132 (3%)
 Frame = +2

Query: 11  VNRDRCVKMAIVHDIAEAIVGDITPVDGVPKEEKSRREKEALDHMCTLL---GGGSRADE 181
           VNRD+CV++A+VHDIAE++VGDITPVD + KEEK RRE E + ++C  L        A E
Sbjct: 96  VNRDKCVRIALVHDIAESLVGDITPVDPIGKEEKHRREWETIKYLCNALIKPYNEIAAKE 155

Query: 182 VRELWMEYENNATLEAKVVKDFDKVEMILQALEYEKEQ--GHDLEEFFQSTAGKFQTDVG 355
           + + W+ YEN  +LEA+ VKD DK EM++Q  EYE+E     + ++FF + A   +TD  
Sbjct: 156 IMDDWLAYENVTSLEARYVKDIDKYEMLVQCFEYEREYKGTKNFDDFFGAVA-SIKTDEV 214

Query: 356 KAWAAEVASRRK 391
           K W +++  +R+
Sbjct: 215 KGWTSDLVVQRQ 226

>YGK1_YEAST (P53144) Hypothetical 25.3 kDa protein in RPL28-SEH1 intergenic|
           region
          Length = 215

 Score = 97.8 bits (242), Expect = 2e-20
 Identities = 51/132 (38%), Positives = 79/132 (59%), Gaps = 5/132 (3%)
 Frame = +2

Query: 11  VNRDRCVKMAIVHDIAEAIVGDITPVDGVPKEEKSRREKEALDHMCTLL---GGGSRADE 181
           V+R++C+++A+VHD AE++VGDITP D + KEEK RRE E + ++C  +      S + E
Sbjct: 77  VDRNKCIRIALVHDFAESLVGDITPNDPMTKEEKHRREFETVKYLCESIIRPCSESASRE 136

Query: 182 VRELWMEYENNATLEAKVVKDFDKVEMILQALEYEKEQG--HDLEEFFQSTAGKFQTDVG 355
           + + W+ YE    LE + VKD DK EM++Q  EYE++     DL++F        +TD  
Sbjct: 137 ILDDWLAYEKQTCLEGRYVKDIDKYEMLVQCFEYEQKYNGKKDLKQFL-GAINDIKTDEV 195

Query: 356 KAWAAEVASRRK 391
           K W   +   R+
Sbjct: 196 KKWTQSLLEDRQ 207

>NPBL_MOUSE (Q6KCD5) Nipped-B-like protein (Delangin homolog) (SCC2 homolog)|
          Length = 2798

 Score = 36.2 bits (82), Expect = 0.054
 Identities = 37/144 (25%), Positives = 64/144 (44%), Gaps = 17/144 (11%)
 Frame = +2

Query: 8    GVNRDRCVKMAIVHDIAEA----IVGDITPVDGVPK-----EEKSRREKEALDHMCTLLG 160
            G  +D+  KM +V D+ +     +V     +D V K     EEKSR   +++ +  +   
Sbjct: 974  GEQKDKVEKMGLVEDLNKGAKPVVVLQKLSLDDVQKLIKDREEKSRSSLKSIKNKPSKSN 1033

Query: 161  GGSRADEVR-----ELWMEYENNATLEAKVVKDFDKVEMILQALEYEK---EQGHDLEEF 316
             GS    V      EL  E E+   L  +V  +  K   + +  +Y +   ++ +D +E 
Sbjct: 1034 KGSIDQSVLKELPPELLAEIESTMPLCERVKMNKRKRSTVNEKPKYAEISSDEDNDSDEA 1093

Query: 317  FQSTAGKFQTDVGKAWAAEVASRR 388
            F+S+  + + D  KAW  E   RR
Sbjct: 1094 FESSRKRHKKDDDKAWEYEERDRR 1117

>Y747_PASMU (Q9CMR5) UPF0207 protein PM0747|
          Length = 195

 Score = 34.3 bits (77), Expect = 0.20
 Identities = 35/125 (28%), Positives = 63/125 (50%), Gaps = 4/125 (3%)
 Frame = +2

Query: 11  VNRDRCVKMAIVHDIAEAIVGDI-TPVDGV-PKEEKSRREKE--ALDHMCTLLGGGSRAD 178
           +N DR   MA+ HD +E   GD+ TP+    PK  ++ +E E  A  H+  LL    +AD
Sbjct: 56  LNPDRIAVMAMYHDTSEIFTGDLPTPIKYFNPKITQAYKEIENAAEAHLLALLPKELQAD 115

Query: 179 EVRELWMEYENNATLEAKVVKDFDKVEMILQALEYEKEQGHDLEEFFQSTAGKFQTDVGK 358
                +++    +  E  VVK  D +   ++A ++E E G+   + F++   + +T + K
Sbjct: 116 FAP--YLDSTQFSAQEKHVVKQADLICAYVKA-QFELENGN---QEFKAAKARLET-LMK 168

Query: 359 AWAAE 373
            W ++
Sbjct: 169 TWHSD 173

>NIPBL_HUMAN (Q6KC79) Nipped-B-like protein (Delangin) (SCC2 homolog)|
          Length = 2804

 Score = 32.0 bits (71), Expect = 1.0
 Identities = 35/144 (24%), Positives = 63/144 (43%), Gaps = 17/144 (11%)
 Frame = +2

Query: 8    GVNRDRCVKMAIVHDIAEA----IVGDITPVDGVPK-----EEKSRREKEALDHMCTLLG 160
            G  +D+  K+ +V D+ +     +V     +D V K     E+KSR   + + +  +   
Sbjct: 980  GEPKDKVEKIGLVEDLNKGAKPVVVLQKLSLDDVQKLIKDREDKSRSSLKPIKNKPSKSN 1039

Query: 161  GGSRADEVR-----ELWMEYENNATLEAKVVKDFDKVEMILQALEYEK---EQGHDLEEF 316
             GS    V      EL  E E+   L  +V  +  K   + +  +Y +   ++ +D +E 
Sbjct: 1040 KGSIDQSVLKELPPELLAEIESTMPLCERVKMNKRKRSTVNEKPKYAEISSDEDNDSDEA 1099

Query: 317  FQSTAGKFQTDVGKAWAAEVASRR 388
            F+S+  + + D  KAW  E   RR
Sbjct: 1100 FESSRKRHKKDDDKAWEYEERDRR 1123

>Y1113_VIBVY (Q7MMF9) UPF0207 protein VV1113|
          Length = 194

 Score = 31.6 bits (70), Expect = 1.3
 Identities = 26/100 (26%), Positives = 45/100 (45%), Gaps = 2/100 (2%)
 Frame = +2

Query: 11  VNRDRCVKMAIVHDIAEAIVGDI-TPVDGV-PKEEKSRREKEALDHMCTLLGGGSRADEV 184
           +N +R   +A+ HD +E + GD+ TPV    P+  K  ++ EA      L        E 
Sbjct: 56  INAERVAVLAMYHDSSEVLTGDLPTPVKYYNPEIAKEYKKIEAAAEQKLLSMLPEEFQED 115

Query: 185 RELWMEYENNATLEAKVVKDFDKVEMILQALEYEKEQGHD 304
              ++  +  +  EA++VK  D +   L+ LE      H+
Sbjct: 116 FRPFVISQQTSEEEAQIVKQADSICAYLKCLEELSAGNHE 155

>AGA1_YEAST (P32323) A-agglutinin attachment subunit precursor|
          Length = 725

 Score = 31.2 bits (69), Expect = 1.7
 Identities = 19/55 (34%), Positives = 30/55 (54%)
 Frame = -3

Query: 201 SIQSSRTSSALEPPPSNVHIWSKASFSLRLFSSLGTPSTGVISPTIASAMSCTIA 37
           ++Q S TS  L+P  S       AS S    +S+ TPST V S   +S+++ T++
Sbjct: 601 TLQISSTSEILQPTSSTAIATISASTSSLSATSISTPSTSVESTIESSSLTPTVS 655

>RFCL_NATPD (Q3ISA5) Replication factor C large subunit (RFC large subunit)|
           (Clamp loader large subunit)
          Length = 483

 Score = 31.2 bits (69), Expect = 1.7
 Identities = 30/115 (26%), Positives = 51/115 (44%), Gaps = 8/115 (6%)
 Frame = +2

Query: 14  NRDRCVKMAIVHDIAEAIVGDIT-------PVDGVPKEEKSRREKEALDHMCTLLGGGSR 172
           NR+  V+M   +++    V  IT        V G+ ++ ++RRE  A+DH     GGG  
Sbjct: 369 NRELTVRMTARYELDAEHVAFITGSGKTTNKVQGIVEDAETRRETAAVDH-----GGGIF 423

Query: 173 ADEVRELWMEYENNATLEAKVVKDFDKVEMILQALEYEKEQG-HDLEEFFQSTAG 334
           A  V +   + E++   +   +  F   E   +++  E+  G  D EE     AG
Sbjct: 424 APAVDDAQSDTESDDDDDGDTLAAFGADEPKEESVNREQSDGTADAEESDDGQAG 478

>IF140_HUMAN (Q96RY7) Intraflagellar transport 140 homolog (WD and|
            tetratricopeptide repeats protein 2)
          Length = 1462

 Score = 30.0 bits (66), Expect = 3.9
 Identities = 33/119 (27%), Positives = 48/119 (40%), Gaps = 11/119 (9%)
 Frame = +2

Query: 20   DRCVKMAIVHDIAEAIVGDITPVDGVPKEEKSRREKEALDHMCT----------LLGGGS 169
            D+  + A++H      +GD+       K  KS    E +  MC            LG   
Sbjct: 769  DKATRDAMLHFSFFVTIGDMDEAFKSIKLIKSEAVWENMARMCVKTQRLDVAKVCLGNMG 828

Query: 170  RADEVRELWMEYENNATLEAKVVKDFDKVEMILQALE-YEKEQGHDLEEFFQSTAGKFQ 343
             A   R L  E E    LEA+V     ++ M+  A + Y K + HDL   F   AG++Q
Sbjct: 829  HARGARAL-REAEQEPELEARVAVLATQLGMLEDAEQLYRKCKRHDLLNKFYQAAGRWQ 886

>OPSP_PETMA (O42490) Pineal opsin (P-opsin) (Pineal gland-specific opsin)|
          Length = 444

 Score = 30.0 bits (66), Expect = 3.9
 Identities = 17/49 (34%), Positives = 29/49 (59%), Gaps = 1/49 (2%)
 Frame = -3

Query: 192 SSRTSSALEPPPSNVHIWSKASFSLRLFSSLG-TPSTGVISPTIASAMS 49
           +  T+S     P N H  + A+ SLR   ++  +P+TGV+ PT+++A S
Sbjct: 348 TEHTASVNTQSPGNRHNIALAAGSLRFTGAVAPSPATGVVEPTMSAAGS 396

>Y1240_CLOAB (Q97JN3) Maf-like protein CAC1240|
          Length = 199

 Score = 30.0 bits (66), Expect = 3.9
 Identities = 23/62 (37%), Positives = 30/62 (48%), Gaps = 3/62 (4%)
 Frame = +2

Query: 110 KSRREKEALDHMCTLLGGGSRADEVRELWMEYENNATLEAK---VVKDFDKVEMILQALE 280
           K + EKEALD +  L G   R  EV      Y   A L+AK   ++KDF   E+    + 
Sbjct: 90  KPKDEKEALDMLSELSG---RTHEV------YSGLAVLDAKKNKIIKDFQCTEVKFSEIS 140

Query: 281 YE 286
           YE
Sbjct: 141 YE 142

>TAXB1_BRARE (Q6P132) Tax1-binding protein 1 homolog|
          Length = 810

 Score = 29.6 bits (65), Expect = 5.0
 Identities = 18/65 (27%), Positives = 34/65 (52%), Gaps = 1/65 (1%)
 Frame = +2

Query: 104 EEKSRREKEALDHMCTLLGGGSRA-DEVRELWMEYENNATLEAKVVKDFDKVEMILQALE 280
           E+  + +KE L+++  L        DE   L  EYE      A++ KD  ++++  Q+L+
Sbjct: 148 EQIQQEKKELLENLDLLQKERDELIDEKNRLEKEYEQERESSAQLRKDVQELQLSAQSLQ 207

Query: 281 YEKEQ 295
            E+E+
Sbjct: 208 EEREE 212

>Y3092_PHOLL (Q7N2I4) UPF0207 protein plu3092|
          Length = 197

 Score = 29.6 bits (65), Expect = 5.0
 Identities = 28/106 (26%), Positives = 50/106 (47%), Gaps = 8/106 (7%)
 Frame = +2

Query: 11  VNRDRCVKMAIVHDIAEAIVGDI-TPV----DGVPKEEKSRR---EKEALDHMCTLLGGG 166
           VN +R   +A+ HD +E I GD+ TPV      + +E K      +K+ L+ + T L   
Sbjct: 54  VNAERIALLAMYHDASEVITGDLPTPVKYHNPHIAREYKKIEKIAQKKLLEMLPTEL--- 110

Query: 167 SRADEVRELWMEYENNATLEAKVVKDFDKVEMILQALEYEKEQGHD 304
              ++ R + ++   + T E  ++K  D +   L+ LE      H+
Sbjct: 111 --QEDFRPI-LDDSQHTTEETFIIKQADSLCAYLKCLEELSAGNHE 153

>ROAA_EUGGR (P30397) Ribosomal operon-associated A protein (RoaA)|
          Length = 516

 Score = 29.6 bits (65), Expect = 5.0
 Identities = 20/71 (28%), Positives = 34/71 (47%)
 Frame = -2

Query: 244 IFDDLRFQSGIVLILHPKLTNFVGS*TSTKQCAHMVQSFLLSTALLFLGHTINRRDIANN 65
           IFD LRF S I+L ++ K   F       K    M+    L  ++ FL + +N++ +   
Sbjct: 292 IFDFLRFGSNILLHINKKHIQFY------KLSLKMIVKMFLKKSVFFLVNLLNKKILDCL 345

Query: 64  SFGYVMHNRHF 32
           + G+   N +F
Sbjct: 346 NRGFFCFNNNF 356

>YEHI_ECOLI (P33346) Hypothetical protein yehI|
          Length = 1210

 Score = 29.6 bits (65), Expect = 5.0
 Identities = 21/57 (36%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
 Frame = +2

Query: 194 WMEYENNATLEAKVVKDFDKVEMILQALEYEKEQGHDLEEFFQSTAGKFQ-TDVGKA 361
           W E+  +A +     K  D  E  L AL    EQGH   E  Q+ A ++Q TDV  A
Sbjct: 671 WPEHTASALIPLVFTKPSDNSEAALLALRLLYEQGHG--ELLQTVANRWQRTDVWSA 725

>TIG_BRUSU (Q8G129) Trigger factor (TF)|
          Length = 477

 Score = 28.9 bits (63), Expect = 8.6
 Identities = 30/108 (27%), Positives = 50/108 (46%), Gaps = 1/108 (0%)
 Frame = +2

Query: 41  IVHDIAEAIVGDITPVDGV-PKEEKSRREKEALDHMCTLLGGGSRADEVRELWMEYENNA 217
           I++D++ +I+ +        P+   S  EKEA      +L G  +AD V  L     N  
Sbjct: 70  ILNDLSRSILAERNEKSATQPEVIMSEDEKEAEK----VLDG--KADFVFSL-----NYE 118

Query: 218 TLEAKVVKDFDKVEMILQALEYEKEQGHDLEEFFQSTAGKFQTDVGKA 361
            L A  VKDF K+ +  + ++   E+  +  +   S+   F+T  GKA
Sbjct: 119 VLPAIEVKDFSKIAVTREVVDISDEEVDEQVKRIASSTRTFETKKGKA 166

>SRP54_AERPE (Q9YB62) Signal recognition 54 kDa protein (SRP54)|
          Length = 441

 Score = 28.9 bits (63), Expect = 8.6
 Identities = 12/30 (40%), Positives = 20/30 (66%)
 Frame = +2

Query: 155 LGGGSRADEVRELWMEYENNATLEAKVVKD 244
           +G G+  D+VREL + Y+N  T+  K+ +D
Sbjct: 401 IGSGTSVDDVRELLVYYKNLKTMMKKLKRD 430

>YFBR_SALTY (Q8ZNE0) UPF0207 protein yfbR|
          Length = 199

 Score = 28.9 bits (63), Expect = 8.6
 Identities = 25/94 (26%), Positives = 47/94 (50%), Gaps = 4/94 (4%)
 Frame = +2

Query: 11  VNRDRCVKMAIVHDIAEAIVGDI-TPVDGVPKEEKSRREKEALDHMCTLLGGGSRADEVR 187
           +N +R   +A+ HD +E + GD+ TPV       +  +E +A++ +          DE+R
Sbjct: 56  LNAERIALLAMYHDASEVLTGDLPTPVKYF--NSQIAQEYKAIEKIAQQKLVDMAPDELR 113

Query: 188 ELWME-YENNATLEAK--VVKDFDKVEMILQALE 280
           +++    + NA  E +  +VK  D +   L+ LE
Sbjct: 114 DIFAPLIDENAWSEEEQAIVKQADALCAYLKCLE 147


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 76,445,986
Number of Sequences: 219361
Number of extensions: 1530316
Number of successful extensions: 5464
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 5294
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5461
length of database: 80,573,946
effective HSP length: 104
effective length of database: 57,760,402
effective search space used: 3812186532
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)