ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | baak4g14 |
|---|---|
| Clone Library Name | barley_pub |
>ref|NM_190292.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1080 Score = 137 bits (69), Expect = 1e-29 Identities = 137/157 (87%), Gaps = 2/157 (1%) Strand = Plus / Plus Query: 1 tgatgttctacatggtaagaaaaggtagtacaaggtgcacaacctggtccaccacttaat 60 ||||||||||||||| ||||||||| || ||||||||||||||||||||| ||||| || Sbjct: 465 tgatgttctacatgg-aagaaaaggg-gtgcaaggtgcacaacctggtccagcacttgat 522 Query: 61 tggatgcagcgaatgaaaattgctgttgatgctgccaaaggacttgaatacctgcacgag 120 |||||||| ||| | | ||| ||||||||||||||||||||||||||||| || || ||| Sbjct: 523 tggatgcaacgagtaagaatagctgttgatgctgccaaaggacttgaatatctacatgag 582 Query: 121 aaggtccagccttctattgtacatagagatgttagat 157 ||||| ||||| || ||||| ||||| ||| |||||| Sbjct: 583 aaggttcagccctccattgttcatagggatattagat 619
>dbj|AK121843.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033101F17, full insert sequence Length = 1692 Score = 137 bits (69), Expect = 1e-29 Identities = 137/157 (87%), Gaps = 2/157 (1%) Strand = Plus / Plus Query: 1 tgatgttctacatggtaagaaaaggtagtacaaggtgcacaacctggtccaccacttaat 60 ||||||||||||||| ||||||||| || ||||||||||||||||||||| ||||| || Sbjct: 622 tgatgttctacatgg-aagaaaaggg-gtgcaaggtgcacaacctggtccagcacttgat 679 Query: 61 tggatgcagcgaatgaaaattgctgttgatgctgccaaaggacttgaatacctgcacgag 120 |||||||| ||| | | ||| ||||||||||||||||||||||||||||| || || ||| Sbjct: 680 tggatgcaacgagtaagaatagctgttgatgctgccaaaggacttgaatatctacatgag 739 Query: 121 aaggtccagccttctattgtacatagagatgttagat 157 ||||| ||||| || ||||| ||||| ||| |||||| Sbjct: 740 aaggttcagccctccattgttcatagggatattagat 776
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 125 bits (63), Expect = 4e-26 Identities = 111/127 (87%) Strand = Plus / Minus Query: 31 caaggtgcacaacctggtccaccacttaattggatgcagcgaatgaaaattgctgttgat 90 ||||||||||||||||||||| ||||| |||||||||| ||| | | ||| ||||||||| Sbjct: 39086710 caaggtgcacaacctggtccagcacttgattggatgcaacgagtaagaatagctgttgat 39086651 Query: 91 gctgccaaaggacttgaatacctgcacgagaaggtccagccttctattgtacatagagat 150 |||||||||||||||||||| || || |||||||| ||||| || ||||| ||||| ||| Sbjct: 39086650 gctgccaaaggacttgaatatctacatgagaaggttcagccctccattgttcatagggat 39086591 Query: 151 gttagat 157 |||||| Sbjct: 39086590 attagat 39086584 Score = 38.2 bits (19), Expect = 7.7 Identities = 31/35 (88%) Strand = Plus / Minus Query: 77 aaattgctgttgatgctgccaaaggacttgaatac 111 |||||||| ||||||| || | ||||||||||||| Sbjct: 30943987 aaattgctcttgatgcggctagaggacttgaatac 30943953
>dbj|AP003418.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0506A10 Length = 145265 Score = 125 bits (63), Expect = 4e-26 Identities = 111/127 (87%) Strand = Plus / Minus Query: 31 caaggtgcacaacctggtccaccacttaattggatgcagcgaatgaaaattgctgttgat 90 ||||||||||||||||||||| ||||| |||||||||| ||| | | ||| ||||||||| Sbjct: 104690 caaggtgcacaacctggtccagcacttgattggatgcaacgagtaagaatagctgttgat 104631 Query: 91 gctgccaaaggacttgaatacctgcacgagaaggtccagccttctattgtacatagagat 150 |||||||||||||||||||| || || |||||||| ||||| || ||||| ||||| ||| Sbjct: 104630 gctgccaaaggacttgaatatctacatgagaaggttcagccctccattgttcatagggat 104571 Query: 151 gttagat 157 |||||| Sbjct: 104570 attagat 104564
>gb|AC108755.2| Oryza sativa (japonica cultivar-group) chromosome 9 BAC clone OSJNBa0028C22, complete sequence Length = 154228 Score = 95.6 bits (48), Expect = 4e-17 Identities = 90/104 (86%) Strand = Plus / Plus Query: 34 ggtgcacaacctggtccaccacttaattggatgcagcgaatgaaaattgctgttgatgct 93 |||||||||||||| ||| ||||| | |||||||||||| ||| ||||||| |||||||| Sbjct: 26192 ggtgcacaacctggcccagcacttgactggatgcagcgagtgagaattgctattgatgct 26251 Query: 94 gccaaaggacttgaatacctgcacgagaaggtccagccttctat 137 || ||||| || ||||| || || ||||||||||| |||||||| Sbjct: 26252 gctaaagggctagaatatcttcatgagaaggtccaaccttctat 26295
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 95.6 bits (48), Expect = 4e-17 Identities = 90/104 (86%) Strand = Plus / Plus Query: 34 ggtgcacaacctggtccaccacttaattggatgcagcgaatgaaaattgctgttgatgct 93 |||||||||||||| ||| ||||| | |||||||||||| ||| ||||||| |||||||| Sbjct: 19698925 ggtgcacaacctggcccagcacttgactggatgcagcgagtgagaattgctattgatgct 19698984 Query: 94 gccaaaggacttgaatacctgcacgagaaggtccagccttctat 137 || ||||| || ||||| || || ||||||||||| |||||||| Sbjct: 19698985 gctaaagggctagaatatcttcatgagaaggtccaaccttctat 19699028
>dbj|AP006756.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC clone:P0450E05 Length = 176553 Score = 95.6 bits (48), Expect = 4e-17 Identities = 90/104 (86%) Strand = Plus / Plus Query: 34 ggtgcacaacctggtccaccacttaattggatgcagcgaatgaaaattgctgttgatgct 93 |||||||||||||| ||| ||||| | |||||||||||| ||| ||||||| |||||||| Sbjct: 44611 ggtgcacaacctggcccagcacttgactggatgcagcgagtgagaattgctattgatgct 44670 Query: 94 gccaaaggacttgaatacctgcacgagaaggtccagccttctat 137 || ||||| || ||||| || || ||||||||||| |||||||| Sbjct: 44671 gctaaagggctagaatatcttcatgagaaggtccaaccttctat 44714
>gb|AY708048.1| Zea mays salt-inducible putative protein serine/threonine/tyrosine kinase mRNA, complete cds Length = 1095 Score = 60.0 bits (30), Expect = 2e-06 Identities = 84/102 (82%) Strand = Plus / Plus Query: 33 aggtgcacaacctggtccaccacttaattggatgcagcgaatgaaaattgctgttgatgc 92 ||||||||| ||||| ||| ||||| ||||||||||||| | || |||||| ||||||| Sbjct: 468 aggtgcacagcctggcccagcacttgattggatgcagcgggttaagattgctattgatgc 527 Query: 93 tgccaaaggacttgaatacctgcacgagaaggtccagccttc 134 ||| ||||| || || || || || || ||||| |||||||| Sbjct: 528 tgctaaagggctagagtatcttcatgaaaaggtgcagccttc 569
>gb|AY109301.1| Zea mays PCO088472 mRNA sequence Length = 1728 Score = 60.0 bits (30), Expect = 2e-06 Identities = 84/102 (82%) Strand = Plus / Plus Query: 33 aggtgcacaacctggtccaccacttaattggatgcagcgaatgaaaattgctgttgatgc 92 ||||||||| ||||| ||| ||||| ||||||||||||| | || |||||| ||||||| Sbjct: 641 aggtgcacagcctggcccagcacttgattggatgcagcgggttaagattgctattgatgc 700 Query: 93 tgccaaaggacttgaatacctgcacgagaaggtccagccttc 134 ||| ||||| || || || || || || ||||| |||||||| Sbjct: 701 tgctaaagggctagagtatcttcatgaaaaggtgcagccttc 742
>ref|NM_129885.2| Arabidopsis thaliana ATP binding / kinase/ protein kinase/ protein serine/threonine kinase/ protein-tyrosine kinase AT2G43230 mRNA, complete cds Length = 1999 Score = 52.0 bits (26), Expect = 5e-04 Identities = 83/102 (81%) Strand = Plus / Plus Query: 21 aaaggtagtacaaggtgcacaacctggtccaccacttaattggatgcagcgaatgaaaat 80 ||||| ||| ||||| ||||||||||||||| ||||| | |||||||| ||| | | | Sbjct: 768 aaagggagtgcaaggagcacaacctggtccaacacttgagtggatgcaacgagtccgagt 827 Query: 81 tgctgttgatgctgccaaaggacttgaatacctgcacgagaa 122 ||| |||||||| || |||||| | |||||| | |||||||| Sbjct: 828 tgcggttgatgcagctaaaggattagaatacttacacgagaa 869
>gb|BT000153.1| Arabidopsis thaliana putative protein kinase (At2g43230) mRNA, complete cds Length = 1244 Score = 52.0 bits (26), Expect = 5e-04 Identities = 83/102 (81%) Strand = Plus / Plus Query: 21 aaaggtagtacaaggtgcacaacctggtccaccacttaattggatgcagcgaatgaaaat 80 ||||| ||| ||||| ||||||||||||||| ||||| | |||||||| ||| | | | Sbjct: 600 aaagggagtgcaaggagcacaacctggtccaacacttgagtggatgcaacgagtccgagt 659 Query: 81 tgctgttgatgctgccaaaggacttgaatacctgcacgagaa 122 ||| |||||||| || |||||| | |||||| | |||||||| Sbjct: 660 tgcggttgatgcagctaaaggattagaatacttacacgagaa 701
>gb|AC004450.3| Arabidopsis thaliana chromosome 2 clone F14B2 map CIC10F02, complete sequence Length = 90283 Score = 52.0 bits (26), Expect = 5e-04 Identities = 83/102 (81%) Strand = Plus / Plus Query: 21 aaaggtagtacaaggtgcacaacctggtccaccacttaattggatgcagcgaatgaaaat 80 ||||| ||| ||||| ||||||||||||||| ||||| | |||||||| ||| | | | Sbjct: 56635 aaagggagtgcaaggagcacaacctggtccaacacttgagtggatgcaacgagtccgagt 56694 Query: 81 tgctgttgatgctgccaaaggacttgaatacctgcacgagaa 122 ||| |||||||| || |||||| | |||||| | |||||||| Sbjct: 56695 tgcggttgatgcagctaaaggattagaatacttacacgagaa 56736
>gb|AY054533.1| Arabidopsis thaliana putative protein kinase (At2g43230; F14B2.17) mRNA, complete cds Length = 1669 Score = 52.0 bits (26), Expect = 5e-04 Identities = 83/102 (81%) Strand = Plus / Plus Query: 21 aaaggtagtacaaggtgcacaacctggtccaccacttaattggatgcagcgaatgaaaat 80 ||||| ||| ||||| ||||||||||||||| ||||| | |||||||| ||| | | | Sbjct: 768 aaagggagtgcaaggagcacaacctggtccaacacttgagtggatgcaacgagtccgagt 827 Query: 81 tgctgttgatgctgccaaaggacttgaatacctgcacgagaa 122 ||| |||||||| || |||||| | |||||| | |||||||| Sbjct: 828 tgcggttgatgcagctaaaggattagaatacttacacgagaa 869
>gb|AC170583.6| Medicago truncatula clone mth2-19b5, complete sequence Length = 113632 Score = 48.1 bits (24), Expect = 0.008 Identities = 60/72 (83%) Strand = Plus / Plus Query: 21 aaaggtagtacaaggtgcacaacctggtccaccacttaattggatgcagcgaatgaaaat 80 ||||| ||| ||||| |||||||| || ||| | ||||| |||||||||||| | | ||| Sbjct: 48107 aaagggagttcaaggggcacaaccagggccaactcttaactggatgcagcgagttagaat 48166 Query: 81 tgctgttgatgc 92 ||| |||||||| Sbjct: 48167 tgcagttgatgc 48178
>ref|NM_129761.1| Arabidopsis thaliana ATP binding / kinase/ protein kinase/ protein serine/threonine kinase/ protein-tyrosine kinase AT2G41970 mRNA, complete cds Length = 1275 Score = 44.1 bits (22), Expect = 0.12 Identities = 34/38 (89%) Strand = Plus / Plus Query: 94 gccaaaggacttgaatacctgcacgagaaggtccagcc 131 |||||||| ||||| | ||| ||||||||||||||||| Sbjct: 733 gccaaagggcttgagttccttcacgagaaggtccagcc 770
>gb|BT010881.1| Arabidopsis thaliana At2g41970 gene, complete cds Length = 1098 Score = 44.1 bits (22), Expect = 0.12 Identities = 34/38 (89%) Strand = Plus / Plus Query: 94 gccaaaggacttgaatacctgcacgagaaggtccagcc 131 |||||||| ||||| | ||| ||||||||||||||||| Sbjct: 556 gccaaagggcttgagttccttcacgagaaggtccagcc 593
>gb|U90439.3| Arabidopsis thaliana chromosome 2 BAC T6D20 genomic sequence, complete sequence Length = 95824 Score = 44.1 bits (22), Expect = 0.12 Identities = 34/38 (89%) Strand = Plus / Plus Query: 94 gccaaaggacttgaatacctgcacgagaaggtccagcc 131 |||||||| ||||| | ||| ||||||||||||||||| Sbjct: 41905 gccaaagggcttgagttccttcacgagaaggtccagcc 41942
>dbj|AK220678.1| Arabidopsis thaliana mRNA for putative protein kinase, complete cds, clone: RAFL21-83-P22 Length = 1535 Score = 44.1 bits (22), Expect = 0.12 Identities = 34/38 (89%) Strand = Plus / Plus Query: 94 gccaaaggacttgaatacctgcacgagaaggtccagcc 131 |||||||| ||||| | ||| ||||||||||||||||| Sbjct: 845 gccaaagggcttgagttccttcacgagaaggtccagcc 882
>dbj|AK176796.1| Arabidopsis thaliana mRNA for putative protein kinase, complete cds, clone: RAFL25-34-H15 Length = 1535 Score = 44.1 bits (22), Expect = 0.12 Identities = 34/38 (89%) Strand = Plus / Plus Query: 94 gccaaaggacttgaatacctgcacgagaaggtccagcc 131 |||||||| ||||| | ||| ||||||||||||||||| Sbjct: 845 gccaaagggcttgagttccttcacgagaaggtccagcc 882
>dbj|AK176586.1| Arabidopsis thaliana mRNA for putative protein kinase, complete cds, clone: RAFL25-11-J01 Length = 1535 Score = 44.1 bits (22), Expect = 0.12 Identities = 34/38 (89%) Strand = Plus / Plus Query: 94 gccaaaggacttgaatacctgcacgagaaggtccagcc 131 |||||||| ||||| | ||| ||||||||||||||||| Sbjct: 845 gccaaagggcttgagttccttcacgagaaggtccagcc 882
>dbj|AK176504.1| Arabidopsis thaliana mRNA for putative protein kinase, complete cds, clone: RAFL25-02-K06 Length = 1535 Score = 44.1 bits (22), Expect = 0.12 Identities = 34/38 (89%) Strand = Plus / Plus Query: 94 gccaaaggacttgaatacctgcacgagaaggtccagcc 131 |||||||| ||||| | ||| ||||||||||||||||| Sbjct: 845 gccaaagggcttgagttccttcacgagaaggtccagcc 882
>dbj|AK175270.1| Arabidopsis thaliana mRNA for putative protein kinase, complete cds, clone: RAFL21-70-K24 Length = 1535 Score = 44.1 bits (22), Expect = 0.12 Identities = 34/38 (89%) Strand = Plus / Plus Query: 94 gccaaaggacttgaatacctgcacgagaaggtccagcc 131 |||||||| ||||| | ||| ||||||||||||||||| Sbjct: 845 gccaaagggcttgagttccttcacgagaaggtccagcc 882
>dbj|AK175234.1| Arabidopsis thaliana mRNA for putative protein kinase, complete cds, clone: RAFL21-66-E15 Length = 1535 Score = 44.1 bits (22), Expect = 0.12 Identities = 34/38 (89%) Strand = Plus / Plus Query: 94 gccaaaggacttgaatacctgcacgagaaggtccagcc 131 |||||||| ||||| | ||| ||||||||||||||||| Sbjct: 845 gccaaagggcttgagttccttcacgagaaggtccagcc 882
>dbj|AP004965.1| Lotus japonicus genomic DNA, chromosome 1, clone:LjT20J05, TM0143b, complete sequence Length = 83991 Score = 44.1 bits (22), Expect = 0.12 Identities = 49/58 (84%) Strand = Plus / Plus Query: 67 cagcgaatgaaaattgctgttgatgctgccaaaggacttgaatacctgcacgagaagg 124 |||||| | ||||||||||| | ||||| ||||| ||||| ||| |||||||||||| Sbjct: 21533 cagcgagttaaaattgctgtaggggctgcaaaagggcttgagtacttgcacgagaagg 21590
>ref|NM_105440.1| Arabidopsis thaliana kinase/ protein binding / protein kinase AT1G67720 mRNA, complete cds Length = 3160 Score = 42.1 bits (21), Expect = 0.49 Identities = 27/29 (93%) Strand = Plus / Plus Query: 88 gatgctgccaaaggacttgaatacctgca 116 |||||||||||||| ||||||||| |||| Sbjct: 2284 gatgctgccaaaggtcttgaatacttgca 2312
>ref|NM_124251.3| Arabidopsis thaliana kinase AT5G48740 mRNA, complete cds Length = 3383 Score = 42.1 bits (21), Expect = 0.49 Identities = 33/37 (89%) Strand = Plus / Plus Query: 80 ttgctgttgatgctgccaaaggacttgaatacctgca 116 |||||||||||||||| |||||| | || |||||||| Sbjct: 2181 ttgctgttgatgctgcaaaaggattggactacctgca 2217
>gb|AC138580.19| Medicago truncatula clone mth2-14e15, complete sequence Length = 164457 Score = 42.1 bits (21), Expect = 0.49 Identities = 21/21 (100%) Strand = Plus / Minus Query: 134 ctattgtacatagagatgtta 154 ||||||||||||||||||||| Sbjct: 67215 ctattgtacatagagatgtta 67195
>gb|BT004222.1| Arabidopsis thaliana clone RAFL15-25-J08 (R20792) At5g48740 mRNA, complete sequence Length = 2891 Score = 42.1 bits (21), Expect = 0.49 Identities = 33/37 (89%) Strand = Plus / Plus Query: 80 ttgctgttgatgctgccaaaggacttgaatacctgca 116 |||||||||||||||| |||||| | || |||||||| Sbjct: 2182 ttgctgttgatgctgcaaaaggattggactacctgca 2218
>gb|AC129951.9| Mus musculus chromosome 15, clone RP23-127B14, complete sequence Length = 211987 Score = 42.1 bits (21), Expect = 0.49 Identities = 21/21 (100%) Strand = Plus / Plus Query: 9 tacatggtaagaaaaggtagt 29 ||||||||||||||||||||| Sbjct: 54972 tacatggtaagaaaaggtagt 54992
>gb|AC132216.7| Homo sapiens chromosome 11, clone RP13-786C16, complete sequence Length = 174373 Score = 42.1 bits (21), Expect = 0.49 Identities = 21/21 (100%) Strand = Plus / Plus Query: 84 tgttgatgctgccaaaggact 104 ||||||||||||||||||||| Sbjct: 34047 tgttgatgctgccaaaggact 34067
>gb|AC146793.7| Medicago truncatula clone mth2-10p9, complete sequence Length = 115521 Score = 40.1 bits (20), Expect = 1.9 Identities = 26/28 (92%) Strand = Plus / Minus Query: 74 tgaaaattgctgttgatgctgccaaagg 101 ||||||||||||||||||| || ||||| Sbjct: 70851 tgaaaattgctgttgatgcagcaaaagg 70824
>gb|AC140022.11| Medicago truncatula clone mth2-11g20, complete sequence Length = 104305 Score = 40.1 bits (20), Expect = 1.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 75 gaaaattgctgttgatgctg 94 |||||||||||||||||||| Sbjct: 53431 gaaaattgctgttgatgctg 53450
>ref|XM_508359.1| PREDICTED: Pan troglodytes similar to Rhombotin-2 (Cysteine-rich protein TTG-2) (T-cell translocation protein 2) (LIM-only protein 2) (LOC451113), mRNA Length = 1434 Score = 38.2 bits (19), Expect = 7.7 Identities = 19/19 (100%) Strand = Plus / Minus Query: 84 tgttgatgctgccaaagga 102 ||||||||||||||||||| Sbjct: 946 tgttgatgctgccaaagga 928
>ref|XM_474365.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1125 Score = 38.2 bits (19), Expect = 7.7 Identities = 22/23 (95%) Strand = Plus / Plus Query: 94 gccaaaggacttgaatacctgca 116 ||||||||||||| ||||||||| Sbjct: 457 gccaaaggacttgcatacctgca 479
>gb|DQ224415.1| Xenopus tropicalis alpha globin larval-5 (HBA-L5) gene, complete cds Length = 3169 Score = 38.2 bits (19), Expect = 7.7 Identities = 19/19 (100%) Strand = Plus / Minus Query: 4 tgttctacatggtaagaaa 22 ||||||||||||||||||| Sbjct: 1525 tgttctacatggtaagaaa 1507
>ref|NM_191144.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1839 Score = 38.2 bits (19), Expect = 7.7 Identities = 31/35 (88%) Strand = Plus / Plus Query: 77 aaattgctgttgatgctgccaaaggacttgaatac 111 |||||||| ||||||| || | ||||||||||||| Sbjct: 1199 aaattgctcttgatgcggctagaggacttgaatac 1233
>ref|XM_472984.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1092 Score = 38.2 bits (19), Expect = 7.7 Identities = 22/23 (95%) Strand = Plus / Plus Query: 109 tacctgcacgagaaggtccagcc 131 ||||||||||||||||| ||||| Sbjct: 574 tacctgcacgagaaggtgcagcc 596
>ref|XM_368127.1| Magnaporthe grisea 70-15 chromosome VI hypothetical protein (MG01117.4) partial mRNA Length = 2223 Score = 38.2 bits (19), Expect = 7.7 Identities = 19/19 (100%) Strand = Plus / Plus Query: 38 cacaacctggtccaccact 56 ||||||||||||||||||| Sbjct: 574 cacaacctggtccaccact 592
>ref|XM_430020.1| PREDICTED: Gallus gallus LOC423094 (LOC423094), mRNA Length = 800 Score = 38.2 bits (19), Expect = 7.7 Identities = 19/19 (100%) Strand = Plus / Plus Query: 4 tgttctacatggtaagaaa 22 ||||||||||||||||||| Sbjct: 169 tgttctacatggtaagaaa 187
>emb|CT009710.8| Mouse DNA sequence from clone RP23-131M7 on chromosome 16, complete sequence Length = 220104 Score = 38.2 bits (19), Expect = 7.7 Identities = 19/19 (100%) Strand = Plus / Minus Query: 30 acaaggtgcacaacctggt 48 ||||||||||||||||||| Sbjct: 204249 acaaggtgcacaacctggt 204231
>gb|L16559.1| Caenorhabditis elegans cosmid C06E1, complete sequence Length = 40216 Score = 38.2 bits (19), Expect = 7.7 Identities = 19/19 (100%) Strand = Plus / Minus Query: 76 aaaattgctgttgatgctg 94 ||||||||||||||||||| Sbjct: 31050 aaaattgctgttgatgctg 31032
>emb|AL731617.3|OSJN00261 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0076N16, complete sequence Length = 146313 Score = 38.2 bits (19), Expect = 7.7 Identities = 22/23 (95%) Strand = Plus / Plus Query: 109 tacctgcacgagaaggtccagcc 131 ||||||||||||||||| ||||| Sbjct: 48608 tacctgcacgagaaggtgcagcc 48630
>emb|AL606456.2|OSJN00017 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0017I01, complete sequence Length = 133331 Score = 38.2 bits (19), Expect = 7.7 Identities = 22/23 (95%) Strand = Plus / Minus Query: 94 gccaaaggacttgaatacctgca 116 ||||||||||||| ||||||||| Sbjct: 23484 gccaaaggacttgcatacctgca 23462
>gb|AC154716.3| Mus musculus BAC clone RP24-362G2 from chromosome 16, complete sequence Length = 178456 Score = 38.2 bits (19), Expect = 7.7 Identities = 19/19 (100%) Strand = Plus / Minus Query: 30 acaaggtgcacaacctggt 48 ||||||||||||||||||| Sbjct: 149575 acaaggtgcacaacctggt 149557
>gb|AC174352.7| Medicago truncatula clone mth2-7o1, complete sequence Length = 121626 Score = 38.2 bits (19), Expect = 7.7 Identities = 31/35 (88%) Strand = Plus / Minus Query: 76 aaaattgctgttgatgctgccaaaggacttgaata 110 ||||||||||||| || |||| |||||||||||| Sbjct: 72279 aaaattgctgttggagcagccagaggacttgaata 72245
>gb|AC016576.8| Homo sapiens chromosome 5 clone CTB-51A17, complete sequence Length = 202302 Score = 38.2 bits (19), Expect = 7.7 Identities = 19/19 (100%) Strand = Plus / Plus Query: 6 ttctacatggtaagaaaag 24 ||||||||||||||||||| Sbjct: 161381 ttctacatggtaagaaaag 161399
>gb|AC145790.2| Xenopus tropicalis clone CH216-12L5, complete sequence Length = 192318 Score = 38.2 bits (19), Expect = 7.7 Identities = 22/23 (95%) Strand = Plus / Plus Query: 41 aacctggtccaccacttaattgg 63 ||||||||| ||||||||||||| Sbjct: 110372 aacctggtcaaccacttaattgg 110394
>gb|AC146868.2| Xenopus tropicalis clone CH216-11K6, complete sequence Length = 190329 Score = 38.2 bits (19), Expect = 7.7 Identities = 19/19 (100%) Strand = Plus / Plus Query: 4 tgttctacatggtaagaaa 22 ||||||||||||||||||| Sbjct: 9338 tgttctacatggtaagaaa 9356
>ref|NM_066493.3| Caenorhabditis elegans C06E1.9 (C06E1.9) mRNA, complete cds Length = 2038 Score = 38.2 bits (19), Expect = 7.7 Identities = 19/19 (100%) Strand = Plus / Plus Query: 76 aaaattgctgttgatgctg 94 ||||||||||||||||||| Sbjct: 1479 aaaattgctgttgatgctg 1497
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 38.2 bits (19), Expect = 7.7 Identities = 22/23 (95%) Strand = Plus / Minus Query: 94 gccaaaggacttgaatacctgca 116 ||||||||||||| ||||||||| Sbjct: 34717922 gccaaaggacttgcatacctgca 34717900 Score = 38.2 bits (19), Expect = 7.7 Identities = 22/23 (95%) Strand = Plus / Plus Query: 109 tacctgcacgagaaggtccagcc 131 ||||||||||||||||| ||||| Sbjct: 24488977 tacctgcacgagaaggtgcagcc 24488999
>dbj|AP003768.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0439E07 Length = 176486 Score = 38.2 bits (19), Expect = 7.7 Identities = 31/35 (88%) Strand = Plus / Minus Query: 77 aaattgctgttgatgctgccaaaggacttgaatac 111 |||||||| ||||||| || | ||||||||||||| Sbjct: 966 aaattgctcttgatgcggctagaggacttgaatac 932
>dbj|AP002972.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0638D12 Length = 161277 Score = 38.2 bits (19), Expect = 7.7 Identities = 31/35 (88%) Strand = Plus / Minus Query: 77 aaattgctgttgatgctgccaaaggacttgaatac 111 |||||||| ||||||| || | ||||||||||||| Sbjct: 144354 aaattgctcttgatgcggctagaggacttgaatac 144320
>dbj|AP003796.2| Gallus gallus genomic DNA, chromosome 5, clone:26D12, complete sequence Length = 156014 Score = 38.2 bits (19), Expect = 7.7 Identities = 19/19 (100%) Strand = Plus / Minus Query: 4 tgttctacatggtaagaaa 22 ||||||||||||||||||| Sbjct: 147108 tgttctacatggtaagaaa 147090
>dbj|AP003795.2| Gallus gallus genomic DNA, chromosome 5, clone:192C9, complete sequence Length = 187259 Score = 38.2 bits (19), Expect = 7.7 Identities = 19/19 (100%) Strand = Plus / Minus Query: 4 tgttctacatggtaagaaa 22 ||||||||||||||||||| Sbjct: 25328 tgttctacatggtaagaaa 25310
>gb|AF130424.1|AF130424 Lycopersicon esculentum cryptochrome 1 gene, complete cds Length = 5581 Score = 38.2 bits (19), Expect = 7.7 Identities = 19/19 (100%) Strand = Plus / Minus Query: 98 aaggacttgaatacctgca 116 ||||||||||||||||||| Sbjct: 2138 aaggacttgaatacctgca 2120
>ref|XM_561027.1| Anopheles gambiae str. PEST ENSANGP00000026908 (ENSANGG00000024837), partial mRNA Length = 816 Score = 38.2 bits (19), Expect = 7.7 Identities = 19/19 (100%) Strand = Plus / Plus Query: 75 gaaaattgctgttgatgct 93 ||||||||||||||||||| Sbjct: 705 gaaaattgctgttgatgct 723
>dbj|AK104911.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-047-B03, full insert sequence Length = 1667 Score = 38.2 bits (19), Expect = 7.7 Identities = 22/23 (95%) Strand = Plus / Plus Query: 94 gccaaaggacttgaatacctgca 116 ||||||||||||| ||||||||| Sbjct: 751 gccaaaggacttgcatacctgca 773
>dbj|AK100266.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023064P16, full insert sequence Length = 1699 Score = 38.2 bits (19), Expect = 7.7 Identities = 22/23 (95%) Strand = Plus / Plus Query: 94 gccaaaggacttgaatacctgca 116 ||||||||||||| ||||||||| Sbjct: 787 gccaaaggacttgcatacctgca 809
>dbj|AK073720.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033063N13, full insert sequence Length = 1537 Score = 38.2 bits (19), Expect = 7.7 Identities = 31/35 (88%) Strand = Plus / Plus Query: 77 aaattgctgttgatgctgccaaaggacttgaatac 111 |||||||| ||||||| || | ||||||||||||| Sbjct: 644 aaattgctcttgatgcggctagaggacttgaatac 678
>dbj|AK071300.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023088H16, full insert sequence Length = 1748 Score = 38.2 bits (19), Expect = 7.7 Identities = 22/23 (95%) Strand = Plus / Plus Query: 94 gccaaaggacttgaatacctgca 116 ||||||||||||| ||||||||| Sbjct: 784 gccaaaggacttgcatacctgca 806
>dbj|AK065576.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013028F13, full insert sequence Length = 1703 Score = 38.2 bits (19), Expect = 7.7 Identities = 22/23 (95%) Strand = Plus / Plus Query: 109 tacctgcacgagaaggtccagcc 131 ||||||||||||||||| ||||| Sbjct: 741 tacctgcacgagaaggtgcagcc 763
>gb|AY106572.1| Zea mays PCO116075 mRNA sequence Length = 1018 Score = 38.2 bits (19), Expect = 7.7 Identities = 28/31 (90%) Strand = Plus / Plus Query: 71 gaatgaaaattgctgttgatgctgccaaagg 101 |||||||||||||| ||| |||||| ||||| Sbjct: 731 gaatgaaaattgctcttggtgctgcgaaagg 761
>emb|AL732353.1| Oryza sativa genomic DNA, chromosome 4, BAC clone: H0801D08, complete sequence Length = 103264 Score = 38.2 bits (19), Expect = 7.7 Identities = 22/23 (95%) Strand = Plus / Minus Query: 94 gccaaaggacttgaatacctgca 116 ||||||||||||| ||||||||| Sbjct: 60989 gccaaaggacttgcatacctgca 60967
>emb|AL606613.3|OSJN00051 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0084K20, complete sequence Length = 116983 Score = 38.2 bits (19), Expect = 7.7 Identities = 22/23 (95%) Strand = Plus / Plus Query: 109 tacctgcacgagaaggtccagcc 131 ||||||||||||||||| ||||| Sbjct: 82299 tacctgcacgagaaggtgcagcc 82321 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 1,226,867 Number of Sequences: 3902068 Number of extensions: 1226867 Number of successful extensions: 90007 Number of sequences better than 10.0: 64 Number of HSP's better than 10.0 without gapping: 66 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 89769 Number of HSP's gapped (non-prelim): 236 length of query: 159 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 137 effective length of database: 17,147,199,772 effective search space: 2349166368764 effective search space used: 2349166368764 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 19 (38.2 bits)
