ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | baak4g12 |
|---|---|
| Clone Library Name | barley_pub |
>PSAF_HORVU (P13192) Photosystem I reaction center subunit III, chloroplast| precursor (Light-harvesting complex I 17 kDa protein) (PSI-F) Length = 235 Score = 127 bits (320), Expect = 5e-30 Identities = 63/68 (92%), Positives = 64/68 (94%) Frame = +1 Query: 13 LHXPAGIGWVGRSYLIAVSGEKKPAMREIIIDVELAARIIPRGFIWPVAAYRELINGDLV 192 L+ IGWVGRSYLIAVSGEKKPAMREIIIDVELAARIIPRGFIWPVAAYRELINGDLV Sbjct: 168 LYIAGWIGWVGRSYLIAVSGEKKPAMREIIIDVELAARIIPRGFIWPVAAYRELINGDLV 227 Query: 193 VDDADIGY 216 VDDADIGY Sbjct: 228 VDDADIGY 235
>PSAF_SPIOL (P12355) Photosystem I reaction center subunit III, chloroplast| precursor (Light-harvesting complex I 17 kDa protein) (PSI-F) Length = 231 Score = 85.5 bits (210), Expect = 3e-17 Identities = 40/60 (66%), Positives = 48/60 (80%) Frame = +1 Query: 13 LHXPAGIGWVGRSYLIAVSGEKKPAMREIIIDVELAARIIPRGFIWPVAAYRELINGDLV 192 L+ IGWVGRSYLIA+ EKKP +EIIIDV LA+ ++ RGF WPVAAYREL+NG+LV Sbjct: 168 LYIAGWIGWVGRSYLIAIRDEKKPTQKEIIIDVPLASSLLFRGFSWPVAAYRELLNGELV 227
>PSAF_FLATR (P46486) Photosystem I reaction center subunit III, chloroplast| precursor (Light-harvesting complex I 17 kDa protein) (PSI-F) Length = 232 Score = 84.0 bits (206), Expect = 8e-17 Identities = 38/60 (63%), Positives = 47/60 (78%) Frame = +1 Query: 13 LHXPAGIGWVGRSYLIAVSGEKKPAMREIIIDVELAARIIPRGFIWPVAAYRELINGDLV 192 L+ IGWVGRSYLIA+ EKKP +EIIIDV LA +++ RGF WPVAAYRE +NG+L+ Sbjct: 169 LYIAGWIGWVGRSYLIAIRDEKKPTQKEIIIDVPLATKLLFRGFSWPVAAYREYLNGELI 228
>PSAF_ODOSI (P49483) Photosystem I reaction center subunit III (PSI-F)| Length = 185 Score = 68.9 bits (167), Expect = 3e-12 Identities = 32/60 (53%), Positives = 43/60 (71%) Frame = +1 Query: 31 IGWVGRSYLIAVSGEKKPAMREIIIDVELAARIIPRGFIWPVAAYRELINGDLVVDDADI 210 IGWVGR YL AVS K P EIII+V LA +I+ G+IWP++A++E I+ DLV D ++ Sbjct: 121 IGWVGRKYLRAVSTTKNPTESEIIINVPLALKIMTTGYIWPISAWQEFISNDLVALDEEV 180
>PSAF_PORPU (P51193) Photosystem I reaction center subunit III (PSI-F)| Length = 185 Score = 68.2 bits (165), Expect = 5e-12 Identities = 30/66 (45%), Positives = 44/66 (66%) Frame = +1 Query: 13 LHXPAGIGWVGRSYLIAVSGEKKPAMREIIIDVELAARIIPRGFIWPVAAYRELINGDLV 192 L+ IGWVGR YL++V+ KP +EII+DV LA + + GF WP+AA++E +G L+ Sbjct: 115 LYITGWIGWVGRGYLLSVAKTSKPTEKEIILDVPLAVKFMSSGFAWPLAAWQEFSSGQLI 174 Query: 193 VDDADI 210 + DI Sbjct: 175 APNDDI 180
>PSAF_SYNY3 (P29256) Photosystem I reaction center subunit III precursor| (PSI-F) Length = 165 Score = 67.0 bits (162), Expect = 1e-11 Identities = 31/66 (46%), Positives = 45/66 (68%) Frame = +1 Query: 13 LHXPAGIGWVGRSYLIAVSGEKKPAMREIIIDVELAARIIPRGFIWPVAAYRELINGDLV 192 L+ IGWVGRSYLI + K P M+E++I+V LA + + GF+WP+AA E +G LV Sbjct: 95 LYIAGWIGWVGRSYLIEIRESKNPEMQEVVINVPLAIKKMLGGFLWPLAAVGEYTSGKLV 154 Query: 193 VDDADI 210 + D++I Sbjct: 155 MKDSEI 160
>PSAF_SYNEN (P0A402) Photosystem I reaction center subunit III precursor| (PSI-F) Length = 164 Score = 65.1 bits (157), Expect = 4e-11 Identities = 32/66 (48%), Positives = 43/66 (65%) Frame = +1 Query: 13 LHXPAGIGWVGRSYLIAVSGEKKPAMREIIIDVELAARIIPRGFIWPVAAYRELINGDLV 192 L+ IGWVGR+YLIAV + +EIIIDV LA + + GF WP+AA +EL +G+L Sbjct: 94 LYIAGWIGWVGRAYLIAVRNSGEANEKEIIIDVPLAIKCMLTGFAWPLAALKELASGELT 153 Query: 193 VDDADI 210 D +I Sbjct: 154 AKDNEI 159
>PSAF_SYNEL (P0A401) Photosystem I reaction center subunit III precursor| (PSI-F) Length = 164 Score = 65.1 bits (157), Expect = 4e-11 Identities = 32/66 (48%), Positives = 43/66 (65%) Frame = +1 Query: 13 LHXPAGIGWVGRSYLIAVSGEKKPAMREIIIDVELAARIIPRGFIWPVAAYRELINGDLV 192 L+ IGWVGR+YLIAV + +EIIIDV LA + + GF WP+AA +EL +G+L Sbjct: 94 LYIAGWIGWVGRAYLIAVRNSGEANEKEIIIDVPLAIKCMLTGFAWPLAALKELASGELT 153 Query: 193 VDDADI 210 D +I Sbjct: 154 AKDNEI 159
>PSAF_GUITH (O78457) Photosystem I reaction center subunit III (PSI-F)| Length = 183 Score = 63.2 bits (152), Expect = 1e-10 Identities = 29/66 (43%), Positives = 42/66 (63%) Frame = +1 Query: 13 LHXPAGIGWVGRSYLIAVSGEKKPAMREIIIDVELAARIIPRGFIWPVAAYRELINGDLV 192 L+ IGWVGR+Y+ S KP +EIIIDV +A I G+IWP AA++E +G+L+ Sbjct: 113 LYIAGWIGWVGRNYVQFASQTDKPTEKEIIIDVPVALSFISTGYIWPFAAFKEFTSGNLI 172 Query: 193 VDDADI 210 + +I Sbjct: 173 AKEDEI 178
>PSAF_CHLRE (P12356) Photosystem I reaction center subunit III, chloroplast| precursor (Light-harvesting complex I 17 kDa protein) (PSI-F) (P21 protein) Length = 227 Score = 63.2 bits (152), Expect = 1e-10 Identities = 33/66 (50%), Positives = 44/66 (66%) Frame = +1 Query: 13 LHXPAGIGWVGRSYLIAVSGEKKPAMREIIIDVELAARIIPRGFIWPVAAYRELINGDLV 192 L+ IG+VGR YLIAV GE KP +EIIIDV LA ++ +G WP+AA +EL G L+ Sbjct: 157 LYVAGYIGYVGRQYLIAVKGEAKPTDKEIIIDVPLATKLAWQGAGWPLAAVQELQRGTLL 216 Query: 193 VDDADI 210 + +I Sbjct: 217 EKEENI 222
>PSAF_SYNP6 (P31083) Photosystem I reaction center subunit III precursor| (PSI-F) Length = 159 Score = 62.8 bits (151), Expect = 2e-10 Identities = 30/66 (45%), Positives = 42/66 (63%) Frame = +1 Query: 13 LHXPAGIGWVGRSYLIAVSGEKKPAMREIIIDVELAARIIPRGFIWPVAAYRELINGDLV 192 L+ IGWVGRSYL A+ +K A +EI+IDV LA + GF WP+AA++E +G L+ Sbjct: 89 LYIAGWIGWVGRSYLQAIKSDKDAAGKEIVIDVPLAVKFSLTGFAWPLAAFQEFSSGKLL 148 Query: 193 VDDADI 210 +I Sbjct: 149 AKADEI 154
>PSAF_ANAVT (P31091) Photosystem I reaction center subunit III precursor| (PSI-F) Length = 164 Score = 62.8 bits (151), Expect = 2e-10 Identities = 29/66 (43%), Positives = 42/66 (63%) Frame = +1 Query: 13 LHXPAGIGWVGRSYLIAVSGEKKPAMREIIIDVELAARIIPRGFIWPVAAYRELINGDLV 192 L+ IGWVGR+YL A+ + +EI +D+ LA II GF WP AA +EL++G+L Sbjct: 94 LYIAGWIGWVGRAYLQAIKKDSDTEQKEIQLDLGLALPIIATGFAWPAAAVKELLSGELT 153 Query: 193 VDDADI 210 D++I Sbjct: 154 AKDSEI 159
>PSAF_ANASP (P58564) Photosystem I reaction center subunit III precursor| (PSI-F) Length = 164 Score = 62.0 bits (149), Expect = 3e-10 Identities = 28/66 (42%), Positives = 42/66 (63%) Frame = +1 Query: 13 LHXPAGIGWVGRSYLIAVSGEKKPAMREIIIDVELAARIIPRGFIWPVAAYRELINGDLV 192 L+ IGWVGR+YL A+ + +EI +D+ +A II GF WP AA +EL++G+L Sbjct: 94 LYIAGWIGWVGRAYLQAIKKDSDTEQKEIQLDLGIALPIIATGFAWPAAAVKELLSGELT 153 Query: 193 VDDADI 210 D++I Sbjct: 154 AKDSEI 159
>PSAF_CYAPA (P48115) Photosystem I reaction center subunit III precursor| (PSI-F) Length = 186 Score = 60.8 bits (146), Expect = 7e-10 Identities = 28/66 (42%), Positives = 41/66 (62%) Frame = +1 Query: 13 LHXPAGIGWVGRSYLIAVSGEKKPAMREIIIDVELAARIIPRGFIWPVAAYRELINGDLV 192 L+ IGW GRSYL AV+ +EIIID+ +A + + +GF+WP+AA +E +G L Sbjct: 116 LYIAGFIGWSGRSYLQAVAASDNSTEKEIIIDIPVALQSVSKGFVWPLAALQEFSSGKLT 175 Query: 193 VDDADI 210 D +I Sbjct: 176 ARDEEI 181
>PSAF_PROMA (Q9X7I4) Photosystem I reaction center subunit III precursor| (PSI-F) Length = 183 Score = 52.4 bits (124), Expect = 3e-07 Identities = 28/60 (46%), Positives = 35/60 (58%) Frame = +1 Query: 31 IGWVGRSYLIAVSGEKKPAMREIIIDVELAARIIPRGFIWPVAAYRELINGDLVVDDADI 210 IGW GR YL A K PA EIIID LA + + +G WPV A ++ +GDL D +I Sbjct: 118 IGWSGREYLRASKKTKNPAENEIIIDFALARQCLIKGAAWPVEANKQGRSGDLREKDENI 177
>PSAF_MASLA (O31127) Photosystem I reaction center subunit III precursor| (PSI-F) Length = 165 Score = 51.2 bits (121), Expect = 6e-07 Identities = 25/67 (37%), Positives = 39/67 (58%), Gaps = 1/67 (1%) Frame = +1 Query: 13 LHXPAGIGWVGRSYLIAVSGE-KKPAMREIIIDVELAARIIPRGFIWPVAAYRELINGDL 189 L+ IGWVGR+YL + + +EI I++ +A I+ GF WP AA +E ++G+L Sbjct: 94 LYIAGWIGWVGRAYLQTIKKQGSNVEQKEIQIELPIALPIMLSGFAWPAAAIKEFLSGEL 153 Query: 190 VVDDADI 210 D +I Sbjct: 154 TAKDEEI 160
>PSAF_CYACA (Q9TLW6) Photosystem I reaction center subunit III (PSI-F)| Length = 187 Score = 49.3 bits (116), Expect = 2e-06 Identities = 24/60 (40%), Positives = 33/60 (55%) Frame = +1 Query: 31 IGWVGRSYLIAVSGEKKPAMREIIIDVELAARIIPRGFIWPVAAYRELINGDLVVDDADI 210 IGW G+ YL KP EIIID+ A + + GF WP+ A +E NG L+ + +I Sbjct: 123 IGWAGKGYLQYSKTLTKPNENEIIIDLPRALKYMFSGFAWPILALKEFKNGSLLASNDEI 182
>PSAF_GLOVI (Q7NH05) Photosystem I reaction center subunit III precursor| (PSI-F) Length = 181 Score = 44.7 bits (104), Expect = 5e-05 Identities = 25/57 (43%), Positives = 32/57 (56%) Frame = +1 Query: 31 IGWVGRSYLIAVSGEKKPAMREIIIDVELAARIIPRGFIWPVAAYRELINGDLVVDD 201 +GW GR YL E K EIIID+ A + + G IWPV A ELI+G + V + Sbjct: 121 LGWAGRLYL----AESKGPEDEIIIDLPKAIKCLLLGLIWPVQAIPELISGKIRVPE 173
>RDRP_MRNV (Q6XNL5) RNA-directed RNA polymerase (EC 2.7.7.48) (RdRp) (RNA| replicase) Length = 1045 Score = 30.8 bits (68), Expect = 0.82 Identities = 16/40 (40%), Positives = 21/40 (52%) Frame = +1 Query: 247 SRSQVRWAAEDEGLWCRSVWAWCRS**DHGEMEPLLYLRN 366 S +QV + + G W VW WC D+GE LYL+N Sbjct: 217 SDNQVDYRVDGGGRWQHKVWNWC----DYGE---FLYLKN 249
>MADCA_HUMAN (Q13477) Mucosal addressin cell adhesion molecule 1 precursor| (MAdCAM-1) (hMAdCAM-1) Length = 406 Score = 29.6 bits (65), Expect = 1.8 Identities = 14/34 (41%), Positives = 17/34 (50%) Frame = -3 Query: 373 GFSFLNTREVPFLHDPISSYTKPTQIDTTSPHPP 272 G + + +P LH P T P DTTSP PP Sbjct: 212 GLELSHRQAIPVLHSP----TSPEPPDTTSPEPP 241
>UNC7_CAEEL (Q03412) Innexin unc-7 (Uncoordinated protein 7)| Length = 522 Score = 29.6 bits (65), Expect = 1.8 Identities = 16/42 (38%), Positives = 21/42 (50%), Gaps = 3/42 (7%) Frame = -1 Query: 336 SMILSAPTPSPHRSTPQALILRCPSDLGPT---SQPRTHGSY 220 S I+ P P P R+ AL+LR P+ P+ QP T Y Sbjct: 14 SRIIGVPPPPPPRAPTTALVLRVPTVDSPSKKKQQPDTRNKY 55
>CYSN_YERPE (Q8ZBP2) Sulfate adenylyltransferase subunit 1 (EC 2.7.7.4)| (Sulfate adenylate transferase) (SAT) (ATP-sulfurylase large subunit) Length = 478 Score = 28.9 bits (63), Expect = 3.1 Identities = 21/84 (25%), Positives = 36/84 (42%) Frame = +1 Query: 25 AGIGWVGRSYLIAVSGEKKPAMREIIIDVELAARIIPRGFIWPVAAYRELINGDLVVDDA 204 AG+ WVG+ + SG + R + D +L +A ++ GDL+VD + Sbjct: 272 AGVVWVGQKVKVLPSGVESTVARIVTFDGDLTEANPGEAITLVLADEVDISRGDLLVDAS 331 Query: 205 DIGY*VAAMRAWLASRSQVRWAAE 276 + ++A + V W AE Sbjct: 332 E------TLKAARNALVDVVWMAE 349
>PPZ1_YEAST (P26570) Serine/threonine-protein phosphatase PP-Z1 (EC 3.1.3.16)| Length = 691 Score = 28.1 bits (61), Expect = 5.3 Identities = 10/17 (58%), Positives = 14/17 (82%) Frame = -2 Query: 314 HQAHTDRHHKPSSSAAH 264 H +HT+R+H PSSS +H Sbjct: 79 HSSHTNRYHFPSSSHSH 95
>AGI_URTDI (P11218) Lectin/endochitinase precursor (EC 3.2.1.14) (Agglutinin)| (UDA) Length = 372 Score = 28.1 bits (61), Expect = 5.3 Identities = 10/21 (47%), Positives = 12/21 (57%) Frame = +1 Query: 286 LWCRSVWAWCRS**DHGEMEP 348 LWC S+W WC G+ EP Sbjct: 38 LWCCSIWGWC------GDSEP 52
>YHBP_ECOL6 (Q8FD95) UPF0306 protein yhbP| Length = 140 Score = 28.1 bits (61), Expect = 5.3 Identities = 11/30 (36%), Positives = 17/30 (56%), Gaps = 1/30 (3%) Frame = +1 Query: 220 VAAMRAWLASRSQVRWAAEDEG-LWCRSVW 306 + A+ WLA + V W + EG LWC + + Sbjct: 4 LTAISRWLAKQHVVTWCVQQEGELWCANAF 33
>YHBP_ECO57 (Q8XA94) UPF0306 protein yhbP| Length = 147 Score = 28.1 bits (61), Expect = 5.3 Identities = 11/30 (36%), Positives = 17/30 (56%), Gaps = 1/30 (3%) Frame = +1 Query: 220 VAAMRAWLASRSQVRWAAEDEG-LWCRSVW 306 + A+ WLA + V W + EG LWC + + Sbjct: 4 LTAISRWLAKQHVVTWCVQQEGELWCANAF 33
>YHBP_SHIFL (P67763) UPF0306 protein yhbP| Length = 147 Score = 27.7 bits (60), Expect = 6.9 Identities = 11/28 (39%), Positives = 16/28 (57%), Gaps = 1/28 (3%) Frame = +1 Query: 226 AMRAWLASRSQVRWAAEDEG-LWCRSVW 306 A+ WLA + V W + EG LWC + + Sbjct: 6 AISRWLAKQHVVTWCVQQEGELWCANAF 33
>YHBP_ECOLI (P67762) UPF0306 protein yhbP| Length = 147 Score = 27.7 bits (60), Expect = 6.9 Identities = 11/28 (39%), Positives = 16/28 (57%), Gaps = 1/28 (3%) Frame = +1 Query: 226 AMRAWLASRSQVRWAAEDEG-LWCRSVW 306 A+ WLA + V W + EG LWC + + Sbjct: 6 AISRWLAKQHVVTWCVQQEGELWCANAF 33
>MDTF_ECOLI (P37637) Multidrug resistance protein mdtF| Length = 1037 Score = 27.3 bits (59), Expect = 9.0 Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 2/36 (5%) Frame = +1 Query: 22 PAGIG--WVGRSYLIAVSGEKKPAMREIIIDVELAA 123 PAG+G W G SY A+S + PA+ I + V A Sbjct: 850 PAGVGYSWTGLSYQEALSSNQAPALYAISLVVVFLA 885
>MDTF_ECOL6 (Q8FCI8) Multidrug resistance protein mdtF| Length = 1037 Score = 27.3 bits (59), Expect = 9.0 Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 2/36 (5%) Frame = +1 Query: 22 PAGIG--WVGRSYLIAVSGEKKPAMREIIIDVELAA 123 PAG+G W G SY A+S + PA+ I + V A Sbjct: 850 PAGVGYSWTGLSYQEALSSNQAPALYAISLVVVFLA 885
>MDTF_ECO57 (Q8X3J5) Multidrug resistance protein mdtF| Length = 1037 Score = 27.3 bits (59), Expect = 9.0 Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 2/36 (5%) Frame = +1 Query: 22 PAGIG--WVGRSYLIAVSGEKKPAMREIIIDVELAA 123 PAG+G W G SY A+S + PA+ I + V A Sbjct: 850 PAGVGYSWTGLSYQEALSSNQAPALYAISLVVVFLA 885
>DNMBP_HUMAN (Q6XZF7) Dynamin-binding protein (Scaffold protein Tuba)| Length = 1577 Score = 27.3 bits (59), Expect = 9.0 Identities = 15/30 (50%), Positives = 17/30 (56%) Frame = -1 Query: 312 PSPHRSTPQALILRCPSDLGPTSQPRTHGS 223 PS S+P RCPSD TSQPR+ S Sbjct: 1424 PSNSESSPS----RCPSDPDSTSQPRSGDS 1449
>ACRF_ECOLI (P24181) Acriflavine resistance protein F (Protein envD)| Length = 1034 Score = 27.3 bits (59), Expect = 9.0 Identities = 13/25 (52%), Positives = 16/25 (64%), Gaps = 2/25 (8%) Frame = +1 Query: 22 PAGIG--WVGRSYLIAVSGEKKPAM 90 PAGIG W G SY +SG + PA+ Sbjct: 851 PAGIGYDWTGMSYQERLSGNQAPAL 875 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 46,587,744 Number of Sequences: 219361 Number of extensions: 832605 Number of successful extensions: 2565 Number of sequences better than 10.0: 33 Number of HSP's better than 10.0 without gapping: 2395 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2561 length of database: 80,573,946 effective HSP length: 106 effective length of database: 57,321,680 effective search space used: 1375720320 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
