ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | baak4g12 |
|---|---|
| Clone Library Name | barley_pub |
>gb|U08135.1|HVU08135 Hordeum vulgare photosystem-I PSI-F subunit precursor mRNA, complete cds Length = 990 Score = 706 bits (356), Expect = 0.0 Identities = 363/364 (99%), Gaps = 1/364 (0%) Strand = Plus / Plus Query: 20 cgccggctggnatcggctgggtcggacgcagctacctcatcgccgtcagcggcgagaaga 79 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 559 cgccggctgg-atcggctgggtcggacgcagctacctcatcgccgtcagcggcgagaaga 617 Query: 80 agcccgccatgagggagatcatcatcgacgtcgagctcgccgccaggatcatccccaggg 139 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 618 agcccgccatgagggagatcatcatcgacgtcgagctcgccgccaggatcatccccaggg 677 Query: 140 gcttcatctggcccgtcgccgcataccgcgagctcatcaacggcgacctcgtcgtcgacg 199 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 678 gcttcatctggcccgtcgccgcataccgcgagctcatcaacggcgacctcgtcgtcgacg 737 Query: 200 acgccgacatcggctactaagtagctgccatgcgtgcgtggttggctagtcggtcccaag 259 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 738 acgccgacatcggctactaagtagctgccatgcgtgcgtggttggctagtcggtcccaag 797 Query: 260 tcagatgggcagcggaggatgagggcttgtggtgtcgatctgtgtgggcttggtgtagga 319 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 798 tcagatgggcagcggaggatgagggcttgtggtgtcgatctgtgtgggcttggtgtagga 857 Query: 320 gctgataggatcatggagaaatggaacctctcttgtatttaagaaactgaacccaatctt 379 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 858 gctgataggatcatggagaaatggaacctctcttgtatttaagaaactgaacccaatctt 917 Query: 380 gtat 383 |||| Sbjct: 918 gtat 921
>ref|NM_184976.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1038 Score = 250 bits (126), Expect = 3e-63 Identities = 181/198 (91%), Gaps = 1/198 (0%) Strand = Plus / Plus Query: 20 cgccggctggnatcggctgggtcggacgcagctacctcatcgccgtcagcggcgagaaga 79 |||||||||| |||||||||||||| | ||||||||||||||| ||||||||||||||| Sbjct: 582 cgccggctgg-atcggctgggtcggcaggagctacctcatcgccatcagcggcgagaaga 640 Query: 80 agcccgccatgagggagatcatcatcgacgtcgagctcgccgccaggatcatccccaggg 139 |||| ||||||||||||||||||||||||||||||||||||| || | || |||| |||| Sbjct: 641 agccggccatgagggagatcatcatcgacgtcgagctcgccgtcaagctcctcccgaggg 700 Query: 140 gcttcatctggcccgtcgccgcataccgcgagctcatcaacggcgacctcgtcgtcgacg 199 | |||||||||||||||||||| ||||| |||||||||| |||| ||||||||||||||| Sbjct: 701 ggttcatctggcccgtcgccgcctaccgtgagctcatcaccggcaacctcgtcgtcgacg 760 Query: 200 acgccgacatcggctact 217 |||| ||||||||||||| Sbjct: 761 acgctgacatcggctact 778 Score = 61.9 bits (31), Expect = 1e-06 Identities = 49/55 (89%) Strand = Plus / Plus Query: 311 ggtgtaggagctgataggatcatggagaaatggaacctctcttgtatttaagaaa 365 ||||||| ||||||||||||||||||| ||||||| ||| ||||| |||||||| Sbjct: 867 ggtgtagaagctgataggatcatggaggaatggaagatctgttgtacttaagaaa 921
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 250 bits (126), Expect = 3e-63 Identities = 181/198 (91%), Gaps = 1/198 (0%) Strand = Plus / Minus Query: 20 cgccggctggnatcggctgggtcggacgcagctacctcatcgccgtcagcggcgagaaga 79 |||||||||| |||||||||||||| | ||||||||||||||| ||||||||||||||| Sbjct: 31969670 cgccggctgg-atcggctgggtcggcaggagctacctcatcgccatcagcggcgagaaga 31969612 Query: 80 agcccgccatgagggagatcatcatcgacgtcgagctcgccgccaggatcatccccaggg 139 |||| ||||||||||||||||||||||||||||||||||||| || | || |||| |||| Sbjct: 31969611 agccggccatgagggagatcatcatcgacgtcgagctcgccgtcaagctcctcccgaggg 31969552 Query: 140 gcttcatctggcccgtcgccgcataccgcgagctcatcaacggcgacctcgtcgtcgacg 199 | |||||||||||||||||||| ||||| |||||||||| |||| ||||||||||||||| Sbjct: 31969551 ggttcatctggcccgtcgccgcctaccgtgagctcatcaccggcaacctcgtcgtcgacg 31969492 Query: 200 acgccgacatcggctact 217 |||| ||||||||||||| Sbjct: 31969491 acgctgacatcggctact 31969474 Score = 61.9 bits (31), Expect = 1e-06 Identities = 49/55 (89%) Strand = Plus / Minus Query: 311 ggtgtaggagctgataggatcatggagaaatggaacctctcttgtatttaagaaa 365 ||||||| ||||||||||||||||||| ||||||| ||| ||||| |||||||| Sbjct: 31969273 ggtgtagaagctgataggatcatggaggaatggaagatctgttgtacttaagaaa 31969219
>gb|AC084748.11| Oryza sativa chromosome 3 BAC OSJNBa0010I09 genomic sequence, complete sequence Length = 144306 Score = 250 bits (126), Expect = 3e-63 Identities = 181/198 (91%), Gaps = 1/198 (0%) Strand = Plus / Minus Query: 20 cgccggctggnatcggctgggtcggacgcagctacctcatcgccgtcagcggcgagaaga 79 |||||||||| |||||||||||||| | ||||||||||||||| ||||||||||||||| Sbjct: 61622 cgccggctgg-atcggctgggtcggcaggagctacctcatcgccatcagcggcgagaaga 61564 Query: 80 agcccgccatgagggagatcatcatcgacgtcgagctcgccgccaggatcatccccaggg 139 |||| ||||||||||||||||||||||||||||||||||||| || | || |||| |||| Sbjct: 61563 agccggccatgagggagatcatcatcgacgtcgagctcgccgtcaagctcctcccgaggg 61504 Query: 140 gcttcatctggcccgtcgccgcataccgcgagctcatcaacggcgacctcgtcgtcgacg 199 | |||||||||||||||||||| ||||| |||||||||| |||| ||||||||||||||| Sbjct: 61503 ggttcatctggcccgtcgccgcctaccgtgagctcatcaccggcaacctcgtcgtcgacg 61444 Query: 200 acgccgacatcggctact 217 |||| ||||||||||||| Sbjct: 61443 acgctgacatcggctact 61426 Score = 61.9 bits (31), Expect = 1e-06 Identities = 49/55 (89%) Strand = Plus / Minus Query: 311 ggtgtaggagctgataggatcatggagaaatggaacctctcttgtatttaagaaa 365 ||||||| ||||||||||||||||||| ||||||| ||| ||||| |||||||| Sbjct: 61225 ggtgtagaagctgataggatcatggaggaatggaagatctgttgtacttaagaaa 61171
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 250 bits (126), Expect = 3e-63 Identities = 181/198 (91%), Gaps = 1/198 (0%) Strand = Plus / Minus Query: 20 cgccggctggnatcggctgggtcggacgcagctacctcatcgccgtcagcggcgagaaga 79 |||||||||| |||||||||||||| | ||||||||||||||| ||||||||||||||| Sbjct: 32060182 cgccggctgg-atcggctgggtcggcaggagctacctcatcgccatcagcggcgagaaga 32060124 Query: 80 agcccgccatgagggagatcatcatcgacgtcgagctcgccgccaggatcatccccaggg 139 |||| ||||||||||||||||||||||||||||||||||||| || | || |||| |||| Sbjct: 32060123 agccggccatgagggagatcatcatcgacgtcgagctcgccgtcaagctcctcccgaggg 32060064 Query: 140 gcttcatctggcccgtcgccgcataccgcgagctcatcaacggcgacctcgtcgtcgacg 199 | |||||||||||||||||||| ||||| |||||||||| |||| ||||||||||||||| Sbjct: 32060063 ggttcatctggcccgtcgccgcctaccgtgagctcatcaccggcaacctcgtcgtcgacg 32060004 Query: 200 acgccgacatcggctact 217 |||| ||||||||||||| Sbjct: 32060003 acgctgacatcggctact 32059986 Score = 61.9 bits (31), Expect = 1e-06 Identities = 49/55 (89%) Strand = Plus / Minus Query: 311 ggtgtaggagctgataggatcatggagaaatggaacctctcttgtatttaagaaa 365 ||||||| ||||||||||||||||||| ||||||| ||| ||||| |||||||| Sbjct: 32059785 ggtgtagaagctgataggatcatggaggaatggaagatctgttgtacttaagaaa 32059731
>dbj|AK069791.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023031N02, full insert sequence Length = 967 Score = 250 bits (126), Expect = 3e-63 Identities = 181/198 (91%), Gaps = 1/198 (0%) Strand = Plus / Plus Query: 20 cgccggctggnatcggctgggtcggacgcagctacctcatcgccgtcagcggcgagaaga 79 |||||||||| |||||||||||||| | ||||||||||||||| ||||||||||||||| Sbjct: 546 cgccggctgg-atcggctgggtcggcaggagctacctcatcgccatcagcggcgagaaga 604 Query: 80 agcccgccatgagggagatcatcatcgacgtcgagctcgccgccaggatcatccccaggg 139 |||| ||||||||||||||||||||||||||||||||||||| || | || |||| |||| Sbjct: 605 agccggccatgagggagatcatcatcgacgtcgagctcgccgtcaagctcctcccgaggg 664 Query: 140 gcttcatctggcccgtcgccgcataccgcgagctcatcaacggcgacctcgtcgtcgacg 199 | |||||||||||||||||||| ||||| |||||||||| |||| ||||||||||||||| Sbjct: 665 ggttcatctggcccgtcgccgcctaccgtgagctcatcaccggcaacctcgtcgtcgacg 724 Query: 200 acgccgacatcggctact 217 |||| ||||||||||||| Sbjct: 725 acgctgacatcggctact 742 Score = 61.9 bits (31), Expect = 1e-06 Identities = 49/55 (89%) Strand = Plus / Plus Query: 311 ggtgtaggagctgataggatcatggagaaatggaacctctcttgtatttaagaaa 365 ||||||| ||||||||||||||||||| ||||||| ||| ||||| |||||||| Sbjct: 836 ggtgtagaagctgataggatcatggaggaatggaagatctgttgtacttaagaaa 890
>dbj|AK060493.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-016-D02, full insert sequence Length = 997 Score = 250 bits (126), Expect = 3e-63 Identities = 181/198 (91%), Gaps = 1/198 (0%) Strand = Plus / Plus Query: 20 cgccggctggnatcggctgggtcggacgcagctacctcatcgccgtcagcggcgagaaga 79 |||||||||| |||||||||||||| | ||||||||||||||| ||||||||||||||| Sbjct: 581 cgccggctgg-atcggctgggtcggcaggagctacctcatcgccatcagcggcgagaaga 639 Query: 80 agcccgccatgagggagatcatcatcgacgtcgagctcgccgccaggatcatccccaggg 139 |||| ||||||||||||||||||||||||||||||||||||| || | || |||| |||| Sbjct: 640 agccggccatgagggagatcatcatcgacgtcgagctcgccgtcaagctcctcccgaggg 699 Query: 140 gcttcatctggcccgtcgccgcataccgcgagctcatcaacggcgacctcgtcgtcgacg 199 | |||||||||||||||||||| ||||| |||||||||| |||| ||||||||||||||| Sbjct: 700 ggttcatctggcccgtcgccgcctaccgtgagctcatcaccggcaacctcgtcgtcgacg 759 Query: 200 acgccgacatcggctact 217 |||| ||||||||||||| Sbjct: 760 acgctgacatcggctact 777 Score = 61.9 bits (31), Expect = 1e-06 Identities = 49/55 (89%) Strand = Plus / Plus Query: 311 ggtgtaggagctgataggatcatggagaaatggaacctctcttgtatttaagaaa 365 ||||||| ||||||||||||||||||| ||||||| ||| ||||| |||||||| Sbjct: 866 ggtgtagaagctgataggatcatggaggaatggaagatctgttgtacttaagaaa 920
>dbj|AK059890.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-208-C12, full insert sequence Length = 990 Score = 250 bits (126), Expect = 3e-63 Identities = 181/198 (91%), Gaps = 1/198 (0%) Strand = Plus / Plus Query: 20 cgccggctggnatcggctgggtcggacgcagctacctcatcgccgtcagcggcgagaaga 79 |||||||||| |||||||||||||| | ||||||||||||||| ||||||||||||||| Sbjct: 569 cgccggctgg-atcggctgggtcggcaggagctacctcatcgccatcagcggcgagaaga 627 Query: 80 agcccgccatgagggagatcatcatcgacgtcgagctcgccgccaggatcatccccaggg 139 |||| ||||||||||||||||||||||||||||||||||||| || | || |||| |||| Sbjct: 628 agccggccatgagggagatcatcatcgacgtcgagctcgccgtcaagctcctcccgaggg 687 Query: 140 gcttcatctggcccgtcgccgcataccgcgagctcatcaacggcgacctcgtcgtcgacg 199 | |||||||||||||||||||| ||||| |||||||||| |||| ||||||||||||||| Sbjct: 688 ggttcatctggcccgtcgccgcctaccgtgagctcatcaccggcaacctcgtcgtcgacg 747 Query: 200 acgccgacatcggctact 217 |||| ||||||||||||| Sbjct: 748 acgctgacatcggctact 765 Score = 61.9 bits (31), Expect = 1e-06 Identities = 49/55 (89%) Strand = Plus / Plus Query: 311 ggtgtaggagctgataggatcatggagaaatggaacctctcttgtatttaagaaa 365 ||||||| ||||||||||||||||||| ||||||| ||| ||||| |||||||| Sbjct: 859 ggtgtagaagctgataggatcatggaggaatggaagatctgttgtacttaagaaa 913
>gb|AF093634.1|AF093634 Oryza sativa photosystem-1 F subunit precursor (PSI-F) mRNA, complete cds Length = 996 Score = 250 bits (126), Expect = 3e-63 Identities = 181/198 (91%), Gaps = 1/198 (0%) Strand = Plus / Plus Query: 20 cgccggctggnatcggctgggtcggacgcagctacctcatcgccgtcagcggcgagaaga 79 |||||||||| |||||||||||||| | ||||||||||||||| ||||||||||||||| Sbjct: 562 cgccggctgg-atcggctgggtcggcaggagctacctcatcgccatcagcggcgagaaga 620 Query: 80 agcccgccatgagggagatcatcatcgacgtcgagctcgccgccaggatcatccccaggg 139 |||| ||||||||||||||||||||||||||||||||||||| || | || |||| |||| Sbjct: 621 agccggccatgagggagatcatcatcgacgtcgagctcgccgtcaagctcctcccgaggg 680 Query: 140 gcttcatctggcccgtcgccgcataccgcgagctcatcaacggcgacctcgtcgtcgacg 199 | |||||||||||||||||||| ||||| |||||||||| |||| ||||||||||||||| Sbjct: 681 ggttcatctggcccgtcgccgcctaccgtgagctcatcaccggcaacctcgtcgtcgacg 740 Query: 200 acgccgacatcggctact 217 |||| ||||||||||||| Sbjct: 741 acgctgacatcggctact 758 Score = 61.9 bits (31), Expect = 1e-06 Identities = 49/55 (89%) Strand = Plus / Plus Query: 311 ggtgtaggagctgataggatcatggagaaatggaacctctcttgtatttaagaaa 365 ||||||| ||||||||||||||||||| ||||||| ||| ||||| |||||||| Sbjct: 847 ggtgtagaagctgataggatcatggaggaatggaagatctgttgtacttaagaaa 901
>gb|AY103687.1| Zea mays PCO106710 mRNA sequence Length = 1242 Score = 238 bits (120), Expect = 1e-59 Identities = 171/188 (90%) Strand = Plus / Plus Query: 31 atcggctgggtcggacgcagctacctcatcgccgtcagcggcgagaagaagcccgccatg 90 ||||| |||||||| | ||||||||||||||| |||||||||||||||||||||||||| Sbjct: 607 atcgggtgggtcggcaggagctacctcatcgccatcagcggcgagaagaagcccgccatg 666 Query: 91 agggagatcatcatcgacgtcgagctcgccgccaggatcatccccaggggcttcatctgg 150 |||||||||||||||||||||||||||||| || | || |||||||||| ||||||||| Sbjct: 667 agggagatcatcatcgacgtcgagctcgccacccgcctcctccccagggggttcatctgg 726 Query: 151 cccgtcgccgcataccgcgagctcatcaacggcgacctcgtcgtcgacgacgccgacatc 210 |||||||| || |||||||||||||||||||| |||||||||||||||||| |||||| Sbjct: 727 cccgtcgcggcctaccgcgagctcatcaacggagacctcgtcgtcgacgacaaggacatc 786 Query: 211 ggctacta 218 |||||||| Sbjct: 787 ggctacta 794
>ref|NM_197599.1| Oryza sativa (japonica cultivar-group) mucin-like protein (OSJNBb0015I11.17), mRNA Length = 1110 Score = 44.1 bits (22), Expect = 0.34 Identities = 31/34 (91%) Strand = Plus / Plus Query: 179 acggcgacctcgtcgtcgacgacgccgacatcgg 212 |||||| ||| ||||||| ||||||||||||||| Sbjct: 353 acggcggccttgtcgtcgccgacgccgacatcgg 386
>emb|AL590464.1|SCO590464 Streptomyces coelicolor plasmid SCP1; segment 2/2 Length = 178073 Score = 44.1 bits (22), Expect = 0.34 Identities = 31/34 (91%) Strand = Plus / Minus Query: 180 cggcgacctcgtcgtcgacgacgccgacatcggc 213 |||||| ||||||||||||| ||| ||||||||| Sbjct: 38065 cggcgagctcgtcgtcgacggcgcggacatcggc 38032
>emb|AL590463.1|SCO590463 Streptomyces coelicolor plasmid SCP1; segment 1/2 Length = 178000 Score = 44.1 bits (22), Expect = 0.34 Identities = 31/34 (91%) Strand = Plus / Plus Query: 180 cggcgacctcgtcgtcgacgacgccgacatcggc 213 |||||| ||||||||||||| ||| ||||||||| Sbjct: 127557 cggcgagctcgtcgtcgacggcgcggacatcggc 127590
>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome Length = 6021225 Score = 44.1 bits (22), Expect = 0.34 Identities = 22/22 (100%) Strand = Plus / Minus Query: 186 cctcgtcgtcgacgacgccgac 207 |||||||||||||||||||||| Sbjct: 1139213 cctcgtcgtcgacgacgccgac 1139192
>dbj|AK106264.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-100-F10, full insert sequence Length = 1488 Score = 44.1 bits (22), Expect = 0.34 Identities = 31/34 (91%) Strand = Plus / Plus Query: 179 acggcgacctcgtcgtcgacgacgccgacatcgg 212 |||||| ||| ||||||| ||||||||||||||| Sbjct: 29 acggcggccttgtcgtcgccgacgccgacatcgg 62
>gb|CP000356.1| Sphingopyxis alaskensis RB2256, complete genome Length = 3345170 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 185 acctcgtcgtcgacgacgccg 205 ||||||||||||||||||||| Sbjct: 1949429 acctcgtcgtcgacgacgccg 1949449
>gb|AC051633.7| Oryza sativa chromosome 10 BAC OSJNBb0015I11 genomic sequence, complete sequence Length = 138824 Score = 42.1 bits (21), Expect = 1.3 Identities = 30/33 (90%) Strand = Plus / Plus Query: 179 acggcgacctcgtcgtcgacgacgccgacatcg 211 |||||| ||| ||||||| |||||||||||||| Sbjct: 107045 acggcggccttgtcgtcgccgacgccgacatcg 107077
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 42.1 bits (21), Expect = 1.3 Identities = 24/25 (96%) Strand = Plus / Plus Query: 189 cgtcgtcgacgacgccgacatcggc 213 |||||||||||||| |||||||||| Sbjct: 18403072 cgtcgtcgacgacgacgacatcggc 18403096 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 186 cctcgtcgtcgacgacgccg 205 |||||||||||||||||||| Sbjct: 12249167 cctcgtcgtcgacgacgccg 12249186
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 42.1 bits (21), Expect = 1.3 Identities = 30/33 (90%) Strand = Plus / Plus Query: 179 acggcgacctcgtcgtcgacgacgccgacatcg 211 |||||| ||| ||||||| |||||||||||||| Sbjct: 20705593 acggcggccttgtcgtcgccgacgccgacatcg 20705625 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 187 ctcgtcgtcgacgacgccga 206 |||||||||||||||||||| Sbjct: 21068367 ctcgtcgtcgacgacgccga 21068348
>gb|AY596297.1| Haloarcula marismortui ATCC 43049 chromosome I, complete sequence Length = 3131724 Score = 42.1 bits (21), Expect = 1.3 Identities = 24/25 (96%) Strand = Plus / Minus Query: 174 catcaacggcgacctcgtcgtcgac 198 |||| |||||||||||||||||||| Sbjct: 1766734 catcgacggcgacctcgtcgtcgac 1766710
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 42.1 bits (21), Expect = 1.3 Identities = 30/33 (90%) Strand = Plus / Plus Query: 179 acggcgacctcgtcgtcgacgacgccgacatcg 211 |||||| ||| ||||||| |||||||||||||| Sbjct: 20716865 acggcggccttgtcgtcgccgacgccgacatcg 20716897 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 187 ctcgtcgtcgacgacgccga 206 |||||||||||||||||||| Sbjct: 21079631 ctcgtcgtcgacgacgccga 21079612
>emb|AL607003.3|OSJN00130 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0006N15, complete sequence Length = 133413 Score = 42.1 bits (21), Expect = 1.3 Identities = 24/25 (96%) Strand = Plus / Plus Query: 189 cgtcgtcgacgacgccgacatcggc 213 |||||||||||||| |||||||||| Sbjct: 104995 cgtcgtcgacgacgacgacatcggc 105019
>ref|XM_471550.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 837 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 186 cctcgtcgtcgacgacgccg 205 |||||||||||||||||||| Sbjct: 195 cctcgtcgtcgacgacgccg 214
>ref|NM_197655.1| Oryza sativa (japonica cultivar-group) hypothetical protein (OSJNBa0015J15.29), mRNA Length = 1440 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 187 ctcgtcgtcgacgacgccga 206 |||||||||||||||||||| Sbjct: 66 ctcgtcgtcgacgacgccga 85
>gb|AC094571.8| Rattus norvegicus 20 BAC CH230-4L21 (Children's Hospital Oakland Research Institute) complete sequence Length = 230137 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 344 aacctctcttgtatttaaga 363 |||||||||||||||||||| Sbjct: 82673 aacctctcttgtatttaaga 82654
>gb|AE017180.1| Geobacter sulfurreducens PCA, complete genome Length = 3814139 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 62 ccgtcagcggcgagaagaag 81 |||||||||||||||||||| Sbjct: 3593454 ccgtcagcggcgagaagaag 3593435
>gb|CP000058.1| Pseudomonas syringae pv. phaseolicola 1448A, complete genome Length = 5928787 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 56 tcatcgccgtcagcggcgag 75 |||||||||||||||||||| Sbjct: 1323871 tcatcgccgtcagcggcgag 1323852
>gb|CP000319.1| Nitrobacter hamburgensis X14, complete genome Length = 4406967 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 189 cgtcgtcgacgacgccgaca 208 |||||||||||||||||||| Sbjct: 1625227 cgtcgtcgacgacgccgaca 1625246
>emb|AL445928.8| Human DNA sequence from clone RP11-305E17 on chromosome 1, complete sequence Length = 173580 Score = 40.1 bits (20), Expect = 5.3 Identities = 26/28 (92%) Strand = Plus / Plus Query: 314 gtaggagctgataggatcatggagaaat 341 ||||||| |||| ||||||||||||||| Sbjct: 156348 gtaggaggtgattggatcatggagaaat 156375
>emb|BX640439.1| Bordetella bronchiseptica strain RB50, complete genome; segment 3/16 Length = 346362 Score = 40.1 bits (20), Expect = 5.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 56 tcatcgccgtcagcggcgagaaga 79 ||||| |||||||||||||||||| Sbjct: 190147 tcatcaccgtcagcggcgagaaga 190124
>emb|BX640425.1| Bordetella parapertussis strain 12822, complete genome; segment 3/14 Length = 348257 Score = 40.1 bits (20), Expect = 5.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 56 tcatcgccgtcagcggcgagaaga 79 ||||| |||||||||||||||||| Sbjct: 103983 tcatcaccgtcagcggcgagaaga 103960
>emb|BX640411.1| Bordetella pertussis strain Tohama I, complete genome; segment 1/12 Length = 346359 Score = 40.1 bits (20), Expect = 5.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 56 tcatcgccgtcagcggcgagaaga 79 ||||| |||||||||||||||||| Sbjct: 179712 tcatcaccgtcagcggcgagaaga 179689
>emb|AL939117.1|SCO939117 Streptomyces coelicolor A3(2) complete genome; segment 14/29 Length = 309050 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 186 cctcgtcgtcgacgacgccg 205 |||||||||||||||||||| Sbjct: 228112 cctcgtcgtcgacgacgccg 228093
>emb|AL662955.3|OSJN00158 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0019J05, complete sequence Length = 185211 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 186 cctcgtcgtcgacgacgccg 205 |||||||||||||||||||| Sbjct: 74048 cctcgtcgtcgacgacgccg 74067
>gb|AC130610.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0478F09, complete sequence Length = 145070 Score = 40.1 bits (20), Expect = 5.3 Identities = 26/28 (92%) Strand = Plus / Minus Query: 180 cggcgacctcgtcgtcgacgacgccgac 207 ||||||| ||||||||||||||| |||| Sbjct: 102034 cggcgacgtcgtcgtcgacgacgacgac 102007
>gb|AC087698.5| Homo sapiens chromosome 8, clone RP11-25K19, complete sequence Length = 150750 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 361 agaaactgaacccaatcttg 380 |||||||||||||||||||| Sbjct: 10998 agaaactgaacccaatcttg 10979
>gb|AC105282.5| Homo sapiens chromosome 18, clone RP11-452F20, complete sequence Length = 167258 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 353 tgtatttaagaaactgaacc 372 |||||||||||||||||||| Sbjct: 17456 tgtatttaagaaactgaacc 17437
>gb|AC026758.8| Oryza sativa chromosome 10 BAC OSJNBa0015J15 genomic sequence, complete sequence Length = 144798 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 187 ctcgtcgtcgacgacgccga 206 |||||||||||||||||||| Sbjct: 137339 ctcgtcgtcgacgacgccga 137358
>gb|AC090152.4| Homo sapiens chromosome 8, clone RP11-554M1, complete sequence Length = 118755 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 361 agaaactgaacccaatcttg 380 |||||||||||||||||||| Sbjct: 14504 agaaactgaacccaatcttg 14523
>gb|CP000232.1| Moorella thermoacetica ATCC 39073, complete genome Length = 2628784 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 105 cgacgtcgagctcgccgcca 124 |||||||||||||||||||| Sbjct: 1823612 cgacgtcgagctcgccgcca 1823593
>gb|CP000249.1| Frankia sp. CcI3, complete genome Length = 5433628 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 188 tcgtcgtcgacgacgccgac 207 |||||||||||||||||||| Sbjct: 3776422 tcgtcgtcgacgacgccgac 3776403
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 40.1 bits (20), Expect = 5.3 Identities = 26/28 (92%) Strand = Plus / Minus Query: 180 cggcgacctcgtcgtcgacgacgccgac 207 ||||||| ||||||||||||||| |||| Sbjct: 4734029 cggcgacgtcgtcgtcgacgacgacgac 4734002
>emb|AL513406.1|CNS07EFT Human DNA sequence chromosome 8 of Homo sapiens (human) Length = 204955 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 361 agaaactgaacccaatcttg 380 |||||||||||||||||||| Sbjct: 141225 agaaactgaacccaatcttg 141244
>emb|CR936257.1| Natronomonas pharaonis DSM 2160 complete genome Length = 2595221 Score = 40.1 bits (20), Expect = 5.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 170 agctcatcaacggcgacctcgtcg 193 |||||||||||| ||||||||||| Sbjct: 1147974 agctcatcaacgacgacctcgtcg 1147951
>gb|AE008384.1| Methanosarcina mazei strain Goe1, complete genome Length = 4096345 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 332 atggagaaatggaacctctc 351 |||||||||||||||||||| Sbjct: 418713 atggagaaatggaacctctc 418732
>gb|AC135425.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0453H11, complete sequence Length = 187956 Score = 40.1 bits (20), Expect = 5.3 Identities = 26/28 (92%) Strand = Plus / Minus Query: 180 cggcgacctcgtcgtcgacgacgccgac 207 ||||||| ||||||||||||||| |||| Sbjct: 6437 cggcgacgtcgtcgtcgacgacgacgac 6410 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,417,694 Number of Sequences: 3902068 Number of extensions: 2417694 Number of successful extensions: 51108 Number of sequences better than 10.0: 46 Number of HSP's better than 10.0 without gapping: 47 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 49936 Number of HSP's gapped (non-prelim): 1172 length of query: 393 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 371 effective length of database: 17,147,199,772 effective search space: 6361611115412 effective search space used: 6361611115412 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
