ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | baak4g08 |
|---|---|
| Clone Library Name | barley_pub |
>HEMH2_ARATH (O04921) Ferrochelatase-2, chloroplast precursor (EC 4.99.1.1)| (Ferrochelatase II) (Protoheme ferro-lyase 2) (Heme synthetase 2) Length = 512 Score = 32.3 bits (72), Expect = 0.64 Identities = 13/31 (41%), Positives = 20/31 (64%) Frame = +1 Query: 16 DVWASRLAMMSFAAAVVAEVSTGKGLVENFG 108 + W R AM++ A +V EV+TGKG + +G Sbjct: 477 ETWNGRAAMLAVLALLVLEVTTGKGFLHQWG 507
>HEMH_ORYSA (O22101) Ferrochelatase-2, chloroplast precursor (EC 4.99.1.1)| (Ferrochelatase II) (Protoheme ferro-lyase 2) (Heme synthetase 2) Length = 526 Score = 30.8 bits (68), Expect = 1.9 Identities = 12/31 (38%), Positives = 20/31 (64%) Frame = +1 Query: 16 DVWASRLAMMSFAAAVVAEVSTGKGLVENFG 108 + W R AM++ A +V EV+TG+G + +G Sbjct: 490 ETWNGRAAMLAVLALLVLEVTTGEGFLHQWG 520
>YCF17_PORPU (P51355) Hypothetical 5.5 kDa protein ycf17 (ORF48)| Length = 48 Score = 30.4 bits (67), Expect = 2.4 Identities = 12/27 (44%), Positives = 17/27 (62%) Frame = +1 Query: 16 DVWASRLAMMSFAAAVVAEVSTGKGLV 96 + W R AM+ F A + E+ TGKGL+ Sbjct: 15 ETWNGRFAMIGFMAVIFIELVTGKGLL 41
>YCF17_CYAPA (P48367) Hypothetical 5.5 kDa protein ycf17| Length = 49 Score = 30.0 bits (66), Expect = 3.2 Identities = 13/29 (44%), Positives = 18/29 (62%) Frame = +1 Query: 22 WASRLAMMSFAAAVVAEVSTGKGLVENFG 108 W RLAM+ F AA++ E TG+G + G Sbjct: 19 WNGRLAMLGFIAALLTESLTGQGTLHFLG 47
>PSBS_SOLSG (Q9FPP4) Photosystem II 22 kDa protein, chloroplast precursor| (CP22) Length = 276 Score = 29.6 bits (65), Expect = 4.1 Identities = 11/27 (40%), Positives = 21/27 (77%) Frame = +1 Query: 16 DVWASRLAMMSFAAAVVAEVSTGKGLV 96 +++ R+AM+ FAA+++ E TGKG++ Sbjct: 100 ELFVGRVAMIGFAASLLGEAITGKGIL 126
>PSBS_LYCES (P54773) Photosystem II 22 kDa protein, chloroplast precursor| (CP22) Length = 276 Score = 29.6 bits (65), Expect = 4.1 Identities = 11/27 (40%), Positives = 21/27 (77%) Frame = +1 Query: 16 DVWASRLAMMSFAAAVVAEVSTGKGLV 96 +++ R+AM+ FAA+++ E TGKG++ Sbjct: 100 ELFVGRVAMIGFAASLLGEAITGKGIL 126
>CBR_DUNBA (P27516) Carotene biosynthesis-related protein CBR, chloroplast| precursor Length = 172 Score = 29.6 bits (65), Expect = 4.1 Identities = 13/26 (50%), Positives = 19/26 (73%) Frame = +1 Query: 31 RLAMMSFAAAVVAEVSTGKGLVENFG 108 RLAM+ F AA+ AE+STG+ ++ G Sbjct: 83 RLAMLGFVAALGAELSTGESVLTQLG 108
>PSBS_ARATH (Q9XF91) Photosystem II 22 kDa protein, chloroplast precursor| (CP22) Length = 265 Score = 29.6 bits (65), Expect = 4.1 Identities = 11/27 (40%), Positives = 21/27 (77%) Frame = +1 Query: 16 DVWASRLAMMSFAAAVVAEVSTGKGLV 96 +++ R+AM+ FAA+++ E TGKG++ Sbjct: 90 ELFVGRVAMIGFAASLLGEALTGKGIL 116
>PSBS_TOBAC (Q9SMB4) Photosystem II 22 kDa protein, chloroplast precursor| (CP22) Length = 274 Score = 29.6 bits (65), Expect = 4.1 Identities = 11/27 (40%), Positives = 21/27 (77%) Frame = +1 Query: 16 DVWASRLAMMSFAAAVVAEVSTGKGLV 96 +++ R+AM+ FAA+++ E TGKG++ Sbjct: 98 ELFVGRVAMIGFAASLLGEAITGKGIL 124
>PSBS_SPIOL (Q02060) Photosystem II 22 kDa protein, chloroplast precursor| (CP22) Length = 274 Score = 28.5 bits (62), Expect = 9.2 Identities = 11/27 (40%), Positives = 21/27 (77%) Frame = +1 Query: 16 DVWASRLAMMSFAAAVVAEVSTGKGLV 96 +++ R+AM+ FAA+++ E TGKG++ Sbjct: 99 ELFVGRVAMIGFAASLLGEGITGKGIL 125 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 49,876,110 Number of Sequences: 219361 Number of extensions: 788439 Number of successful extensions: 1811 Number of sequences better than 10.0: 10 Number of HSP's better than 10.0 without gapping: 1770 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1810 length of database: 80,573,946 effective HSP length: 103 effective length of database: 57,979,763 effective search space used: 3130907202 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
