Clone Information

BLAST Search Result

Clone Name	baak4g05
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	RCAA_HORVU (Q40073) Ribulose bisphosphate carboxylase/oxygenase ...	335	6e-92
2	RCAB_HORVU (Q42450) Ribulose bisphosphate carboxylase/oxygenase ...	304	1e-82
3	RCA_ORYSA (P93431) Ribulose bisphosphate carboxylase/oxygenase a...	303	3e-82
4	RCA_MALDO (Q40281) Ribulose bisphosphate carboxylase/oxygenase a...	291	8e-79
5	RCA_MAIZE (Q9ZT00) Ribulose bisphosphate carboxylase/oxygenase a...	289	3e-78
6	RCA1_LARTR (Q7X9A0) Ribulose bisphosphate carboxylase/oxygenase ...	288	7e-78
7	RCA2_LARTR (Q7X999) Ribulose bisphosphate carboxylase/oxygenase ...	288	9e-78
8	RCA2_TOBAC (Q40565) Ribulose bisphosphate carboxylase/oxygenase ...	285	4e-77
9	RCA_LYCPN (O49074) Ribulose bisphosphate carboxylase/oxygenase a...	284	1e-76
10	RCA1_TOBAC (Q40460) Ribulose bisphosphate carboxylase/oxygenase ...	280	2e-75
11	RCA_PHAAU (O98997) Ribulose bisphosphate carboxylase/oxygenase a...	276	3e-74
12	RCA_ARATH (P10896) Ribulose bisphosphate carboxylase/oxygenase a...	276	4e-74
13	RCA_SPIOL (P10871) Ribulose bisphosphate carboxylase/oxygenase a...	275	8e-74
14	RCA_PHAVU (O64981) Ribulose bisphosphate carboxylase/oxygenase a...	266	2e-71
15	RCA_CUCSA (Q01587) Ribulose bisphosphate carboxylase/oxygenase a...	238	6e-63
16	RCA_CHLRE (P23489) Ribulose bisphosphate carboxylase/oxygenase a...	208	9e-54
17	RCA_ANASC (Q06721) Ribulose bisphosphate carboxylase/oxygenase a...	171	9e-43
18	RCA_ANASP (P58555) Ribulose bisphosphate carboxylase/oxygenase a...	167	1e-41
19	RCA_POPEU (P84562) Ribulose bisphosphate carboxylase/oxygenase a...	47	3e-05
20	SYL_PSESM (Q87VX3) Leucyl-tRNA synthetase (EC 6.1.1.4) (Leucine-...	32	0.88
21	EF1A2_XENLA (P17507) Elongation factor 1-alpha, oocyte form (EF-...	32	1.5
22	YNEI_ECOLI (P76149) Aldehyde dehydrogenase-like protein yneI (EC...	30	3.3
23	LEPA_HELPY (O25122) GTP-binding protein lepA	30	3.3
24	PNPT1_MOUSE (Q8K1R3) Polyribonucleotide nucleotidyltransferase 1...	30	4.4
25	EF1A_ONCVO (P27592) Elongation factor 1-alpha (EF-1-alpha)	30	4.4
26	GP116_HUMAN (Q8IZF2) Probable G-protein coupled receptor 116 pre...	30	4.4
27	PNPT1_PONPY (Q5RCW2) Polyribonucleotide nucleotidyltransferase 1...	30	5.7
28	PNPT1_HUMAN (Q8TCS8) Polyribonucleotide nucleotidyltransferase 1...	30	5.7
29	LRC24_MOUSE (Q8BHA1) Leucine-rich repeat-containing protein 24 p...	30	5.7
30	RL3_CLOPE (Q8XHS3) 50S ribosomal protein L3	29	7.5
31	LEPA_LEIXX (Q6AEB5) GTP-binding protein lepA	29	7.5
32	EF1A0_XENLA (P13549) Elongation factor 1-alpha, somatic form (EF...	29	7.5
33	PTRA_SALTY (Q8ZMB5) Protease 3 precursor (EC 3.4.24.55) (Proteas...	29	7.5
34	PTRA_SALTI (Q8Z418) Protease 3 precursor (EC 3.4.24.55) (Proteas...	29	7.5
35	RPOA_ANAMM (Q5PA81) DNA-directed RNA polymerase alpha chain (EC ...	29	7.5
36	GIDA_LACPL (Q88RX6) tRNA uridine 5-carboxymethylaminomethyl modi...	29	9.7
37	EF1A3_XENLA (P17508) Elongation factor 1-alpha, oocyte form (EF-...	29	9.7
38	PBPB_BACSU (Q07868) Penicillin-binding protein 2B (PBP-2B)	29	9.7
39	VID27_YEAST (P40157) Vacuolar import and degradation protein VID27	29	9.7
40	GIDA_BORBU (P53362) tRNA uridine 5-carboxymethylaminomethyl modi...	29	9.7

>RCAA_HORVU (Q40073) Ribulose bisphosphate carboxylase/oxygenase activase A,|
           chloroplast precursor (RuBisCO activase A) (RA A)
          Length = 464

 Score =  335 bits (858), Expect = 6e-92
 Identities = 164/164 (100%), Positives = 164/164 (100%)
 Frame = +2

Query: 11  ENPRVPIVVTGNDFSTLYAPLIRDGRMEKFYWAPTRDDRIGVCKGIFQTDNVSDESVVKI 190
           ENPRVPIVVTGNDFSTLYAPLIRDGRMEKFYWAPTRDDRIGVCKGIFQTDNVSDESVVKI
Sbjct: 264 ENPRVPIVVTGNDFSTLYAPLIRDGRMEKFYWAPTRDDRIGVCKGIFQTDNVSDESVVKI 323

Query: 191 VDTFPGQSIDFFGALRARVYDDEVRKWVGSTGIENIGKRLVNSRDGPVTFEQPKMTVEKL 370
           VDTFPGQSIDFFGALRARVYDDEVRKWVGSTGIENIGKRLVNSRDGPVTFEQPKMTVEKL
Sbjct: 324 VDTFPGQSIDFFGALRARVYDDEVRKWVGSTGIENIGKRLVNSRDGPVTFEQPKMTVEKL 383

Query: 371 LEYGHMLVQEQDNVKRVQLADTYMSQAALGDANQDAMKTGSFYG 502
           LEYGHMLVQEQDNVKRVQLADTYMSQAALGDANQDAMKTGSFYG
Sbjct: 384 LEYGHMLVQEQDNVKRVQLADTYMSQAALGDANQDAMKTGSFYG 427

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>RCAB_HORVU (Q42450) Ribulose bisphosphate carboxylase/oxygenase activase B,|
           chloroplast precursor (RuBisCO activase B) (RA B)
          Length = 425

 Score =  304 bits (778), Expect = 1e-82
 Identities = 142/165 (86%), Positives = 157/165 (95%)
 Frame = +2

Query: 8   EENPRVPIVVTGNDFSTLYAPLIRDGRMEKFYWAPTRDDRIGVCKGIFQTDNVSDESVVK 187
           EENPRVPI+VTGNDFSTLYAPLIRDGRMEKFYWAPTR+DRIGVCKGIF+TDNV DE+VV+
Sbjct: 260 EENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRTDNVPDEAVVR 319

Query: 188 IVDTFPGQSIDFFGALRARVYDDEVRKWVGSTGIENIGKRLVNSRDGPVTFEQPKMTVEK 367
           +VDTFPGQSIDFFGALRARVYDDEVRKWVG  G+ENI KRLVNSR+GP TF+QPKMT+EK
Sbjct: 320 LVDTFPGQSIDFFGALRARVYDDEVRKWVGEIGVENISKRLVNSREGPPTFDQPKMTIEK 379

Query: 368 LLEYGHMLVQEQDNVKRVQLADTYMSQAALGDANQDAMKTGSFYG 502
           L+EYGHMLVQEQ+NVKRVQLAD Y+S+AALG AN DAMKTG+FYG
Sbjct: 380 LMEYGHMLVQEQENVKRVQLADKYLSEAALGQANDDAMKTGAFYG 424

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>RCA_ORYSA (P93431) Ribulose bisphosphate carboxylase/oxygenase activase,|
           chloroplast precursor (RuBisCO activase) (RA)
          Length = 432

 Score =  303 bits (775), Expect = 3e-82
 Identities = 141/165 (85%), Positives = 157/165 (95%)
 Frame = +2

Query: 8   EENPRVPIVVTGNDFSTLYAPLIRDGRMEKFYWAPTRDDRIGVCKGIFQTDNVSDESVVK 187
           E+NPRVPI+VTGNDFSTLYAPLIRDGRMEKFYWAPTRDDR+GVCKGIF+TDNV DE +VK
Sbjct: 263 EDNPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRDDRVGVCKGIFRTDNVPDEDIVK 322

Query: 188 IVDTFPGQSIDFFGALRARVYDDEVRKWVGSTGIENIGKRLVNSRDGPVTFEQPKMTVEK 367
           IVD+FPGQSIDFFGALRARVYDDEVRKWV  TG+ENIGKRLVNSR+GP  FEQPKMT+EK
Sbjct: 323 IVDSFPGQSIDFFGALRARVYDDEVRKWVSDTGVENIGKRLVNSREGPPEFEQPKMTIEK 382

Query: 368 LLEYGHMLVQEQDNVKRVQLADTYMSQAALGDANQDAMKTGSFYG 502
           L+EYG+MLV+EQ+NVKRVQLA+ Y+S+AALGDAN DAMKTGSFYG
Sbjct: 383 LIEYGYMLVKEQENVKRVQLAEQYLSEAALGDANSDAMKTGSFYG 427

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>RCA_MALDO (Q40281) Ribulose bisphosphate carboxylase/oxygenase activase,|
           chloroplast precursor (RuBisCO activase) (RA)
          Length = 437

 Score =  291 bits (745), Expect = 8e-79
 Identities = 135/165 (81%), Positives = 155/165 (93%)
 Frame = +2

Query: 8   EENPRVPIVVTGNDFSTLYAPLIRDGRMEKFYWAPTRDDRIGVCKGIFQTDNVSDESVVK 187
           EENPRVPI+VTGNDFSTLYAPLIRDGRMEKFYWAPTR+DRIGVC GIF++DNV+ E +VK
Sbjct: 273 EENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCIGIFRSDNVAKEDIVK 332

Query: 188 IVDTFPGQSIDFFGALRARVYDDEVRKWVGSTGIENIGKRLVNSRDGPVTFEQPKMTVEK 367
           +VDTFPGQSIDFFGALRARVYDDEVRKW+   G+++IGK+LVNS++GP TFEQPKMT+EK
Sbjct: 333 LVDTFPGQSIDFFGALRARVYDDEVRKWITGVGVDSIGKKLVNSKEGPPTFEQPKMTIEK 392

Query: 368 LLEYGHMLVQEQDNVKRVQLADTYMSQAALGDANQDAMKTGSFYG 502
           LLEYG+MLVQEQ+NVKRVQLAD Y+S+AALGDAN DAM TG+FYG
Sbjct: 393 LLEYGNMLVQEQENVKRVQLADKYLSEAALGDANSDAMNTGTFYG 437

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>RCA_MAIZE (Q9ZT00) Ribulose bisphosphate carboxylase/oxygenase activase,|
           chloroplast precursor (RuBisCO activase) (RA)
          Length = 433

 Score =  289 bits (740), Expect = 3e-78
 Identities = 133/164 (81%), Positives = 155/164 (94%)
 Frame = +2

Query: 8   EENPRVPIVVTGNDFSTLYAPLIRDGRMEKFYWAPTRDDRIGVCKGIFQTDNVSDESVVK 187
           E+NPRVPI+VTGNDFSTLYAPLIRDGRMEKFYWAPTR+DRIGVCKGIF+TD V +E VV+
Sbjct: 269 EDNPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRTDGVDEEHVVQ 328

Query: 188 IVDTFPGQSIDFFGALRARVYDDEVRKWVGSTGIENIGKRLVNSRDGPVTFEQPKMTVEK 367
           +VDTFPGQSIDFFGALRARVYDDEVR+WV  TG+ENI ++LVNS++GP TFEQPK+T+EK
Sbjct: 329 LVDTFPGQSIDFFGALRARVYDDEVRRWVSETGVENIARKLVNSKEGPPTFEQPKITIEK 388

Query: 368 LLEYGHMLVQEQDNVKRVQLADTYMSQAALGDANQDAMKTGSFY 499
           LLEYGHMLV EQ+NVKRVQLAD Y+++AALG+AN+DAMKTGSF+
Sbjct: 389 LLEYGHMLVAEQENVKRVQLADKYLNEAALGEANEDAMKTGSFF 432

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>RCA1_LARTR (Q7X9A0) Ribulose bisphosphate carboxylase/oxygenase activase 1,|
           chloroplast precursor (RuBisCO activase 1) (RA 1)
           (RubisCO activase alpha form)
          Length = 476

 Score =  288 bits (737), Expect = 7e-78
 Identities = 134/165 (81%), Positives = 153/165 (92%)
 Frame = +2

Query: 8   EENPRVPIVVTGNDFSTLYAPLIRDGRMEKFYWAPTRDDRIGVCKGIFQTDNVSDESVVK 187
           EENPRVPI+VTGNDFSTLYAPLIRDGRMEKFYWAPTR+DRIGVCKGIF+TDNV+D+ +VK
Sbjct: 273 EENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRTDNVADDDIVK 332

Query: 188 IVDTFPGQSIDFFGALRARVYDDEVRKWVGSTGIENIGKRLVNSRDGPVTFEQPKMTVEK 367
           +VDTFPGQSIDFFGALRARVY DEVRKWV   G++ IGK+LVNS++GP +FEQPKMT++K
Sbjct: 333 LVDTFPGQSIDFFGALRARVYHDEVRKWVSEVGVDTIGKKLVNSKEGPPSFEQPKMTIDK 392

Query: 368 LLEYGHMLVQEQDNVKRVQLADTYMSQAALGDANQDAMKTGSFYG 502
           LL YG MLVQEQ+NVKRVQLAD YMS+AALGDAN DA+K G+FYG
Sbjct: 393 LLGYGGMLVQEQENVKRVQLADKYMSEAALGDANNDAIKRGTFYG 437

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>RCA2_LARTR (Q7X999) Ribulose bisphosphate carboxylase/oxygenase activase 2,|
           chloroplast precursor (RuBisCO activase 2) (RA 2)
           (RubisCO activase beta form)
          Length = 435

 Score =  288 bits (736), Expect = 9e-78
 Identities = 133/163 (81%), Positives = 153/163 (93%)
 Frame = +2

Query: 8   EENPRVPIVVTGNDFSTLYAPLIRDGRMEKFYWAPTRDDRIGVCKGIFQTDNVSDESVVK 187
           EENPRVPI+VTGNDFSTLYAPLIRDGRMEKFYWAPTR+DRIGVCKGIF+TDNV +E +VK
Sbjct: 273 EENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRTDNVPEEDIVK 332

Query: 188 IVDTFPGQSIDFFGALRARVYDDEVRKWVGSTGIENIGKRLVNSRDGPVTFEQPKMTVEK 367
           +VD FPGQSIDFFGALRARVYDDEVRKWV   G++ IGK+LVNS++GP TFEQPKMT++K
Sbjct: 333 VVDQFPGQSIDFFGALRARVYDDEVRKWVSEVGVDTIGKKLVNSKEGPPTFEQPKMTIDK 392

Query: 368 LLEYGHMLVQEQDNVKRVQLADTYMSQAALGDANQDAMKTGSF 496
           LL+YG+MLV+EQ+NVKRVQLAD YMS+AALGDANQDA+K G+F
Sbjct: 393 LLQYGNMLVEEQENVKRVQLADKYMSEAALGDANQDAIKRGTF 435

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>RCA2_TOBAC (Q40565) Ribulose bisphosphate carboxylase/oxygenase activase 2,|
           chloroplast precursor (RuBisCO activase 2) (RA 2)
          Length = 439

 Score =  285 bits (730), Expect = 4e-77
 Identities = 136/163 (83%), Positives = 152/163 (93%)
 Frame = +2

Query: 8   EENPRVPIVVTGNDFSTLYAPLIRDGRMEKFYWAPTRDDRIGVCKGIFQTDNVSDESVVK 187
           +EN RVPI+VTGNDFSTLYAPLIRDGRMEKFYWAPTR+DRIGVCKGIF+TDNV +E+V+K
Sbjct: 277 QENARVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRTDNVPEEAVIK 336

Query: 188 IVDTFPGQSIDFFGALRARVYDDEVRKWVGSTGIENIGKRLVNSRDGPVTFEQPKMTVEK 367
           IVDTFPGQSIDFFGALRARVYDDEVRKWV  TGIE IG +L+NS DGP TFEQPKMTVEK
Sbjct: 337 IVDTFPGQSIDFFGALRARVYDDEVRKWVSGTGIEAIGDKLLNSFDGPPTFEQPKMTVEK 396

Query: 368 LLEYGHMLVQEQDNVKRVQLADTYMSQAALGDANQDAMKTGSF 496
           LLEYG+MLVQEQ+NVKRVQLA+TY+ +AALGDAN DA+ TG+F
Sbjct: 397 LLEYGNMLVQEQENVKRVQLAETYLKEAALGDANADAINTGNF 439

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>RCA_LYCPN (O49074) Ribulose bisphosphate carboxylase/oxygenase activase,|
           chloroplast precursor (RuBisCO activase) (RA)
          Length = 459

 Score =  284 bits (726), Expect = 1e-76
 Identities = 135/161 (83%), Positives = 152/161 (94%)
 Frame = +2

Query: 8   EENPRVPIVVTGNDFSTLYAPLIRDGRMEKFYWAPTRDDRIGVCKGIFQTDNVSDESVVK 187
           +EN RVPI+VTGNDFSTLYAPLIRDGRMEKFYWAPTR+DRIGVCKGIF+TDNV +E+VVK
Sbjct: 272 QENARVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRTDNVPEEAVVK 331

Query: 188 IVDTFPGQSIDFFGALRARVYDDEVRKWVGSTGIENIGKRLVNSRDGPVTFEQPKMTVEK 367
           IVD+FPGQSIDFFGALRARVYDDEVRKWV  TGIE IG++L+NSRDGP TFEQPKMT+EK
Sbjct: 332 IVDSFPGQSIDFFGALRARVYDDEVRKWVSGTGIELIGEKLLNSRDGPPTFEQPKMTLEK 391

Query: 368 LLEYGHMLVQEQDNVKRVQLADTYMSQAALGDANQDAMKTG 490
           LLEYG+MLVQEQ+NVKRVQLA+TY+ +AALGDAN DA+ TG
Sbjct: 392 LLEYGNMLVQEQENVKRVQLAETYLKEAALGDANADAINTG 432

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>RCA1_TOBAC (Q40460) Ribulose bisphosphate carboxylase/oxygenase activase 1,|
           chloroplast precursor (RuBisCO activase 1) (RA 1)
          Length = 442

 Score =  280 bits (715), Expect = 2e-75
 Identities = 134/164 (81%), Positives = 147/164 (89%)
 Frame = +2

Query: 8   EENPRVPIVVTGNDFSTLYAPLIRDGRMEKFYWAPTRDDRIGVCKGIFQTDNVSDESVVK 187
           +EN RVPI+VTGNDFSTLYAPLIRDGRMEKFYWAPTR+DRIGVC GIF+TDNV  E VVK
Sbjct: 277 QENARVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCTGIFRTDNVPAEDVVK 336

Query: 188 IVDTFPGQSIDFFGALRARVYDDEVRKWVGSTGIENIGKRLVNSRDGPVTFEQPKMTVEK 367
           IVD FPGQSIDFFGALRARVYDDEVRKWV  TGIE IG +L+NS DGP TFEQPKMT+EK
Sbjct: 337 IVDNFPGQSIDFFGALRARVYDDEVRKWVSGTGIEKIGDKLLNSFDGPPTFEQPKMTIEK 396

Query: 368 LLEYGHMLVQEQDNVKRVQLADTYMSQAALGDANQDAMKTGSFY 499
           LLEYG+MLVQEQ+NVKRVQLAD Y+ +AALGDAN DA+  GSF+
Sbjct: 397 LLEYGNMLVQEQENVKRVQLADKYLKEAALGDANADAINNGSFF 440

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>RCA_PHAAU (O98997) Ribulose bisphosphate carboxylase/oxygenase activase,|
           chloroplast precursor (RuBisCO activase) (RA)
          Length = 439

 Score =  276 bits (706), Expect = 3e-74
 Identities = 125/164 (76%), Positives = 152/164 (92%)
 Frame = +2

Query: 8   EENPRVPIVVTGNDFSTLYAPLIRDGRMEKFYWAPTRDDRIGVCKGIFQTDNVSDESVVK 187
           EEN RVPI+VTGNDFSTLYAPLIRDGRMEKFYWAPTRDDR+GVCKGIF+TD V +E + K
Sbjct: 275 EENARVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRDDRVGVCKGIFRTDGVPEEDITK 334

Query: 188 IVDTFPGQSIDFFGALRARVYDDEVRKWVGSTGIENIGKRLVNSRDGPVTFEQPKMTVEK 367
           +VDTFPGQSIDFFGALRARVYDDEVRKW+   G++  GK+LVNS++GP TF+QPKM+++K
Sbjct: 335 LVDTFPGQSIDFFGALRARVYDDEVRKWISGVGVDATGKKLVNSKEGPPTFDQPKMSLDK 394

Query: 368 LLEYGHMLVQEQDNVKRVQLADTYMSQAALGDANQDAMKTGSFY 499
           LL+YG+MLVQEQ+NVKRVQLAD Y+++AALG+AN+DA+K+GSF+
Sbjct: 395 LLQYGNMLVQEQENVKRVQLADKYLNEAALGNANEDAIKSGSFF 438

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>RCA_ARATH (P10896) Ribulose bisphosphate carboxylase/oxygenase activase,|
           chloroplast precursor (RuBisCO activase) (RA)
          Length = 474

 Score =  276 bits (705), Expect = 4e-74
 Identities = 131/165 (79%), Positives = 148/165 (89%)
 Frame = +2

Query: 8   EENPRVPIVVTGNDFSTLYAPLIRDGRMEKFYWAPTRDDRIGVCKGIFQTDNVSDESVVK 187
           EEN RVPI+ TGNDFSTLYAPLIRDGRMEKFYWAPTR+DRIGVCKGIF+TD + DE +V 
Sbjct: 273 EENARVPIICTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRTDKIKDEDIVT 332

Query: 188 IVDTFPGQSIDFFGALRARVYDDEVRKWVGSTGIENIGKRLVNSRDGPVTFEQPKMTVEK 367
           +VD FPGQSIDFFGALRARVYDDEVRK+V S G+E IGKRLVNSR+GP  FEQP+MT EK
Sbjct: 333 LVDQFPGQSIDFFGALRARVYDDEVRKFVESLGVEKIGKRLVNSREGPPVFEQPEMTYEK 392

Query: 368 LLEYGHMLVQEQDNVKRVQLADTYMSQAALGDANQDAMKTGSFYG 502
           L+EYG+MLV EQ+NVKRVQLA+TY+SQAALGDAN DA+  G+FYG
Sbjct: 393 LMEYGNMLVMEQENVKRVQLAETYLSQAALGDANADAIGRGTFYG 437

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>RCA_SPIOL (P10871) Ribulose bisphosphate carboxylase/oxygenase activase,|
           chloroplast precursor (RuBisCO activase) (RA)
          Length = 472

 Score =  275 bits (702), Expect = 8e-74
 Identities = 128/165 (77%), Positives = 149/165 (90%)
 Frame = +2

Query: 8   EENPRVPIVVTGNDFSTLYAPLIRDGRMEKFYWAPTRDDRIGVCKGIFQTDNVSDESVVK 187
           ++N RVPI+VTGNDFSTLYAPLIRDGRMEKFYWAPTR+DRIGVC GIF+TD V  E VVK
Sbjct: 271 QDNARVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCTGIFKTDKVPAEHVVK 330

Query: 188 IVDTFPGQSIDFFGALRARVYDDEVRKWVGSTGIENIGKRLVNSRDGPVTFEQPKMTVEK 367
           +VD FPGQSIDFFGALRARVY DEVRKWV S G++N+GK+LVNS+DGP  FEQP+MT++K
Sbjct: 331 LVDAFPGQSIDFFGALRARVYHDEVRKWVNSVGVDNVGKKLVNSKDGPPVFEQPEMTLQK 390

Query: 368 LLEYGHMLVQEQDNVKRVQLADTYMSQAALGDANQDAMKTGSFYG 502
           L+EYG+MLVQEQ+NVKRVQLAD YMS AALGDAN+DA+  G+F+G
Sbjct: 391 LMEYGNMLVQEQENVKRVQLADQYMSSAALGDANKDAIDRGTFFG 435

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>RCA_PHAVU (O64981) Ribulose bisphosphate carboxylase/oxygenase activase,|
           chloroplast precursor (RuBisCO activase) (RA)
          Length = 441

 Score =  266 bits (681), Expect = 2e-71
 Identities = 121/164 (73%), Positives = 150/164 (91%)
 Frame = +2

Query: 8   EENPRVPIVVTGNDFSTLYAPLIRDGRMEKFYWAPTRDDRIGVCKGIFQTDNVSDESVVK 187
           E+N RVPI+VTGNDFSTLYAPLIRDGRMEKFYWAPTR+DRIGVCKGIF+TD V ++ +V+
Sbjct: 277 EDNARVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRTDGVPEKDIVE 336

Query: 188 IVDTFPGQSIDFFGALRARVYDDEVRKWVGSTGIENIGKRLVNSRDGPVTFEQPKMTVEK 367
           +VD  PGQSIDFFGALRARVYDDEVRKW+   G++++GK+LVNS++GP TF+QPKMT++K
Sbjct: 337 LVDKHPGQSIDFFGALRARVYDDEVRKWISGVGVDSVGKKLVNSKEGPPTFDQPKMTLDK 396

Query: 368 LLEYGHMLVQEQDNVKRVQLADTYMSQAALGDANQDAMKTGSFY 499
           LL Y  MLVQEQ+NVKRVQLAD Y+++AALG+AN+DA+K+GSF+
Sbjct: 397 LLLYASMLVQEQENVKRVQLADQYLNEAALGNANEDAIKSGSFF 440

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>RCA_CUCSA (Q01587) Ribulose bisphosphate carboxylase/oxygenase activase,|
           chloroplast precursor (RuBisCO activase) (RA)
          Length = 413

 Score =  238 bits (608), Expect = 6e-63
 Identities = 110/140 (78%), Positives = 126/140 (90%)
 Frame = +2

Query: 8   EENPRVPIVVTGNDFSTLYAPLIRDGRMEKFYWAPTRDDRIGVCKGIFQTDNVSDESVVK 187
           EENPRVPI+VTGNDFSTLYAPLIRDGRM+KFYWAPTR+DRIG+C GIF+TD V  E +VK
Sbjct: 270 EENPRVPIIVTGNDFSTLYAPLIRDGRMDKFYWAPTREDRIGICTGIFRTDGVPFEDIVK 329

Query: 188 IVDTFPGQSIDFFGALRARVYDDEVRKWVGSTGIENIGKRLVNSRDGPVTFEQPKMTVEK 367
           +VDTFPGQSIDFFGALRARVYDDEVRKW    G+E IG+ LVNS++ P TF+QPKMT+EK
Sbjct: 330 LVDTFPGQSIDFFGALRARVYDDEVRKWAVGVGVERIGRNLVNSKESPPTFDQPKMTIEK 389

Query: 368 LLEYGHMLVQEQDNVKRVQL 427
           LLEYG+MLV EQ+NVKRV+L
Sbjct: 390 LLEYGNMLVMEQENVKRVKL 409

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>RCA_CHLRE (P23489) Ribulose bisphosphate carboxylase/oxygenase activase,|
           chloroplast precursor (RuBisCO activase) (RA)
          Length = 408

 Score =  208 bits (529), Expect = 9e-54
 Identities = 102/152 (67%), Positives = 120/152 (78%)
 Frame = +2

Query: 2   RHEENPRVPIVVTGNDFSTLYAPLIRDGRMEKFYWAPTRDDRIGVCKGIFQTDNVSDESV 181
           ++EE PRVPIV TGNDFSTLYAPLIRDGRMEK+YW PTR+DRIGVC GIFQ DNV    V
Sbjct: 244 KNEEIPRVPIVCTGNDFSTLYAPLIRDGRMEKYYWNPTREDRIGVCMGIFQEDNVQRREV 303

Query: 182 VKIVDTFPGQSIDFFGALRARVYDDEVRKWVGSTGIENIGKRLVNSRDGPVTFEQPKMTV 361
             +VDTFPGQSIDFFGALRARVYDD VR+W+  TG++ IG++LVN+R   V   +  M +
Sbjct: 304 ENLVDTFPGQSIDFFGALRARVYDDMVRQWITDTGVDKIGQQLVNARQ-KVAMPKVSMDL 362

Query: 362 EKLLEYGHMLVQEQDNVKRVQLADTYMSQAAL 457
             L++YG  LV EQ+NVKRVQLAD Y+S A L
Sbjct: 363 NVLIKYGKSLVDEQENVKRVQLADAYLSGAEL 394

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>RCA_ANASC (Q06721) Ribulose bisphosphate carboxylase/oxygenase activase|
           (RuBisCO activase) (RA)
          Length = 415

 Score =  171 bits (434), Expect = 9e-43
 Identities = 77/140 (55%), Positives = 103/140 (73%)
 Frame = +2

Query: 20  RVPIVVTGNDFSTLYAPLIRDGRMEKFYWAPTRDDRIGVCKGIFQTDNVSDESVVKIVDT 199
           RVPI+VTGNDFSTLYAPLIRDGRMEKFYW P RD+++G+  GIF  D +S   V K+VD+
Sbjct: 150 RVPIIVTGNDFSTLYAPLIRDGRMEKFYWEPHRDEKVGIVGGIFAEDGLSQRDVEKLVDS 209

Query: 200 FPGQSIDFFGALRARVYDDEVRKWVGSTGIENIGKRLVNSRDGPVTFEQPKMTVEKLLEY 379
           FP QSIDFF ALR+R+YD+++R ++   G EN+  R+VNS +GP  F++P  T+  L+E 
Sbjct: 210 FPNQSIDFFSALRSRIYDEQIRDFIHQVGYENVSLRVVNSLEGPPAFKKPDFTLSHLIES 269

Query: 380 GHMLVQEQDNVKRVQLADTY 439
            + +V EQ  ++  QL D Y
Sbjct: 270 ANFMVAEQKRIETSQLVDEY 289

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>RCA_ANASP (P58555) Ribulose bisphosphate carboxylase/oxygenase activase|
           (RuBisCO activase) (RA)
          Length = 414

 Score =  167 bits (424), Expect = 1e-41
 Identities = 78/147 (53%), Positives = 105/147 (71%), Gaps = 2/147 (1%)
 Frame = +2

Query: 5   HEENP--RVPIVVTGNDFSTLYAPLIRDGRMEKFYWAPTRDDRIGVCKGIFQTDNVSDES 178
           ++ NP  RVPI+VTGNDFSTLYAPLIRDGRMEKFYW P RDD++G+  GIF  D +S   
Sbjct: 143 YDSNPIRRVPIIVTGNDFSTLYAPLIRDGRMEKFYWEPNRDDKVGIVGGIFAEDGLSQRE 202

Query: 179 VVKIVDTFPGQSIDFFGALRARVYDDEVRKWVGSTGIENIGKRLVNSRDGPVTFEQPKMT 358
           + ++VDTFP QSIDFF ALR+R+YD ++R ++   G E I  R+VNS + P  F++P  +
Sbjct: 203 IEQLVDTFPKQSIDFFSALRSRIYDIQIRDFIHKVGFERISLRVVNSLEAPPEFKKPDFS 262

Query: 359 VEKLLEYGHMLVQEQDNVKRVQLADTY 439
           +  L+E G++++ EQ  V   QL D Y
Sbjct: 263 LAHLIESGNLVLGEQQRVDNSQLVDEY 289

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>RCA_POPEU (P84562) Ribulose bisphosphate carboxylase/oxygenase activase,|
           chloroplast (RuBisCO activase) (RA) (Fragments)
          Length = 32

 Score = 47.0 bits (110), Expect = 3e-05
 Identities = 27/60 (45%), Positives = 30/60 (50%)
 Frame = +2

Query: 188 IVDTFPGQSIDFFGALRARVYDDEVRKWVGSTGIENIGKRLVNSRDGPVTFEQPKMTVEK 367
           +VDTFPGQSIDFFGAL                            R+GP TFEQP MT+EK
Sbjct: 1   LVDTFPGQSIDFFGAL----------------------------REGPPTFEQPAMTIEK 32

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>SYL_PSESM (Q87VX3) Leucyl-tRNA synthetase (EC 6.1.1.4) (Leucine--tRNA ligase)|
            (LeuRS)
          Length = 868

 Score = 32.3 bits (72), Expect = 0.88
 Identities = 36/146 (24%), Positives = 58/146 (39%), Gaps = 4/146 (2%)
 Frame = -2

Query: 499  VEGTSLHRILVSITQSCLAHVGVSKLHTLDIVLLLDEHVPVXXXXXXXXXXXLEGHGPVP 320
            VEG+  HR L  + +   AHVG     +LDI  L DE   V            +  G   
Sbjct: 671  VEGS--HRFLRRVWRLAQAHVGQGASGSLDIAALTDEQKAVRRSIHQAIKQASQDIGQNQ 728

Query: 319  RVHQPLANVLDSGRADPLAHLIVVHPSTQSTEKVNGLSWEGVDDLDDRL--VTDIVGLE- 149
            + +  +A V        +  + V+  + Q+T +   L  EG++ +   L  +T  +  E 
Sbjct: 729  KFNTAVAQV--------MTLMNVLEKAPQATPQDRALLQEGLETVTLLLAPITPHISHEL 780

Query: 148  -DTLADTDTVVTGGSPVELLHTTITD 74
               L   + V+  G PV   H  + D
Sbjct: 781  WTQLGHNEPVIDAGWPVFDAHALVQD 806

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>EF1A2_XENLA (P17507) Elongation factor 1-alpha, oocyte form (EF-1-alpha-O)|
           (EF-1AO) (42S p48)
          Length = 461

 Score = 31.6 bits (70), Expect = 1.5
 Identities = 24/78 (30%), Positives = 33/78 (42%), Gaps = 8/78 (10%)
 Frame = +2

Query: 332 VTFEQPKMTVE-KLLEYGHMLVQEQ-------DNVKRVQLADTYMSQAALGDANQDAMKT 487
           VTF    +T E K +E  H  +QE         NVK + + D      A    N   M+ 
Sbjct: 278 VTFAPSNVTTEVKSVEMHHEALQEALPGDNVGFNVKNISVKDIRRGNVAGDSKNDPPMQA 337

Query: 488 GSFYG*KILHTHPPSLAA 541
           GSF    I+  HP  ++A
Sbjct: 338 GSFTAQVIILNHPGQISA 355

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>YNEI_ECOLI (P76149) Aldehyde dehydrogenase-like protein yneI (EC 1.2.1.-)|
          Length = 462

 Score = 30.4 bits (67), Expect = 3.3
 Identities = 14/42 (33%), Positives = 23/42 (54%)
 Frame = -2

Query: 271 PLAHLIVVHPSTQSTEKVNGLSWEGVDDLDDRLVTDIVGLED 146
           P  H I ++P+T   E+++ L W G DD+++ L     G  D
Sbjct: 5   PATHAISINPATG--EQLSVLPWAGADDIENALQLAAAGFRD 44

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>LEPA_HELPY (O25122) GTP-binding protein lepA|
          Length = 602

 Score = 30.4 bits (67), Expect = 3.3
 Identities = 20/79 (25%), Positives = 37/79 (46%)
 Frame = +2

Query: 185 KIVDTFPGQSIDFFGALRARVYDDEVRKWVGSTGIENIGKRLVNSRDGPVTFEQPKMTVE 364
           KI+ T P  S DF   L+A +YD     ++G+         LV   DG +  EQ  + + 
Sbjct: 180 KIITTIPAPSGDFNAPLKALIYDSWFDNYLGALA-------LVRIMDGSINTEQEILVMG 232

Query: 365 KLLEYGHMLVQEQDNVKRV 421
              ++G + +   + +K++
Sbjct: 233 TGKKHGVLGLYYPNPLKKI 251

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>PNPT1_MOUSE (Q8K1R3) Polyribonucleotide nucleotidyltransferase 1, mitochondrial|
           precursor (EC 2.7.7.8) (PNPase 1) (Polynucleotide
           phosphorylase-like protein) (PNPase old-35) (3'-5' RNA
           exonuclease OLD35)
          Length = 783

 Score = 30.0 bits (66), Expect = 4.4
 Identities = 20/62 (32%), Positives = 31/62 (50%), Gaps = 15/62 (24%)
 Frame = -2

Query: 184 DDRLVTDIVGLEDTLADTDTVVTG---------------GSPVELLHTTITDQRSVERRE 50
           D RL+TDI+G+ED   D D  + G               G P++++   I  Q SV ++E
Sbjct: 526 DYRLLTDILGIEDYNGDMDFKIAGTNKGITALQADIKLPGVPIKIIMEAI-QQASVAKKE 584

Query: 49  IV 44
           I+
Sbjct: 585 IL 586

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>EF1A_ONCVO (P27592) Elongation factor 1-alpha (EF-1-alpha)|
          Length = 464

 Score = 30.0 bits (66), Expect = 4.4
 Identities = 23/78 (29%), Positives = 32/78 (41%), Gaps = 8/78 (10%)
 Frame = +2

Query: 332 VTFEQPKMTVE-KLLEYGHMLVQEQ-------DNVKRVQLADTYMSQAALGDANQDAMKT 487
           VTF    +T E K +E  H  +QE         NVK + + D      A    N  A +T
Sbjct: 278 VTFAPQNLTTEVKSVEMHHEALQEALPGDNVGFNVKNISIKDIRRGSVASDSKNDPAKET 337

Query: 488 GSFYG*KILHTHPPSLAA 541
             F    I+  HP  ++A
Sbjct: 338 KMFTAQVIIMNHPGQISA 355

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>GP116_HUMAN (Q8IZF2) Probable G-protein coupled receptor 116 precursor|
          Length = 1346

 Score = 30.0 bits (66), Expect = 4.4
 Identities = 14/35 (40%), Positives = 21/35 (60%)
 Frame = -3

Query: 435 VSASCTRLTLSCSWTSMCPYSSSFSTVIFGCSKVT 331
           + +SC+R TL    T  CP  SS +TVI+ C  ++
Sbjct: 420 IDSSCSRYTLKADGTQ-CPSGSSGTTVIYTCEFIS 453

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>PNPT1_PONPY (Q5RCW2) Polyribonucleotide nucleotidyltransferase 1, mitochondrial|
           precursor (EC 2.7.7.8) (PNPase 1)
          Length = 783

 Score = 29.6 bits (65), Expect = 5.7
 Identities = 20/62 (32%), Positives = 31/62 (50%), Gaps = 15/62 (24%)
 Frame = -2

Query: 184 DDRLVTDIVGLEDTLADTDTVVTG---------------GSPVELLHTTITDQRSVERRE 50
           D RL+TDI+G+ED   D D  + G               G P++++   I  Q SV ++E
Sbjct: 526 DYRLLTDILGIEDYNGDMDFKIAGTNKGITALQADIKLPGIPIKIVMEAI-QQASVAKKE 584

Query: 49  IV 44
           I+
Sbjct: 585 IL 586

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>PNPT1_HUMAN (Q8TCS8) Polyribonucleotide nucleotidyltransferase 1, mitochondrial|
           precursor (EC 2.7.7.8) (PNPase 1) (Polynucleotide
           phosphorylase-like protein) (PNPase old-35) (3'-5' RNA
           exonuclease OLD35)
          Length = 783

 Score = 29.6 bits (65), Expect = 5.7
 Identities = 20/62 (32%), Positives = 31/62 (50%), Gaps = 15/62 (24%)
 Frame = -2

Query: 184 DDRLVTDIVGLEDTLADTDTVVTG---------------GSPVELLHTTITDQRSVERRE 50
           D RL+TDI+G+ED   D D  + G               G P++++   I  Q SV ++E
Sbjct: 526 DYRLLTDILGIEDYNGDMDFKIAGTNKGITALQADIKLPGIPIKIVMEAI-QQASVAKKE 584

Query: 49  IV 44
           I+
Sbjct: 585 IL 586

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>LRC24_MOUSE (Q8BHA1) Leucine-rich repeat-containing protein 24 precursor|
          Length = 521

 Score = 29.6 bits (65), Expect = 5.7
 Identities = 16/37 (43%), Positives = 26/37 (70%), Gaps = 1/37 (2%)
 Frame = +2

Query: 269 WVGSTGIENIGKRLVNSRDGPVT-FEQPKMTVEKLLE 376
           W+GS  I+  G+RL++SRD  +T  E P++ ++ LLE
Sbjct: 222 WLGSW-IKEGGRRLLSSRDKKITCAEPPRLALQSLLE 257

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>RL3_CLOPE (Q8XHS3) 50S ribosomal protein L3|
          Length = 209

 Score = 29.3 bits (64), Expect = 7.5
 Identities = 21/77 (27%), Positives = 33/77 (42%), Gaps = 1/77 (1%)
 Frame = +2

Query: 161 NVSDESVVKIVDTFP-GQSIDFFGALRARVYDDEVRKWVGSTGIENIGKRLVNSRDGPVT 337
           NV DE  +K VDTF  G  +D  G  + + +   +++W  S G  + G +   +      
Sbjct: 92  NVGDE--IK-VDTFEIGDKVDVSGVSKGKGFQGTIKRWNASRGPMSHGSKFHRAPGSMGA 148

Query: 338 FEQPKMTVEKLLEYGHM 388
              P  T +     GHM
Sbjct: 149 ASDPSRTFKNKRMPGHM 165

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>LEPA_LEIXX (Q6AEB5) GTP-binding protein lepA|
          Length = 616

 Score = 29.3 bits (64), Expect = 7.5
 Identities = 26/66 (39%), Positives = 33/66 (50%), Gaps = 9/66 (13%)
 Frame = -2

Query: 307 PLANVLDSGRADP------LAHLIVVHPSTQSTEKVNGLSWEGVDDLDDRLVTDI---VG 155
           P+ N +D   ADP      LA LI   P      +V+G +  GVDDL DR+V +I   VG
Sbjct: 142 PVLNKIDLPAADPDKYAAELAGLIGGKPG--DVLRVSGKTGVGVDDLLDRVVQEIPAPVG 199

Query: 154 LEDTLA 137
             D  A
Sbjct: 200 AADAPA 205

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>EF1A0_XENLA (P13549) Elongation factor 1-alpha, somatic form (EF-1-alpha-S)|
          Length = 462

 Score = 29.3 bits (64), Expect = 7.5
 Identities = 24/78 (30%), Positives = 31/78 (39%), Gaps = 8/78 (10%)
 Frame = +2

Query: 332 VTFEQPKMTVE-KLLEYGHMLVQEQD-------NVKRVQLADTYMSQAALGDANQDAMKT 487
           VTF    +T E K +E  H  + E         NVK V + D      A    N   M+ 
Sbjct: 278 VTFAPVNVTTEVKSVEMHHEALTEAVPGDNVGFNVKNVSVKDVRRGNVAGDSKNDPPMEA 337

Query: 488 GSFYG*KILHTHPPSLAA 541
           GSF    I+  HP  + A
Sbjct: 338 GSFTAQVIILNHPGQIGA 355

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>PTRA_SALTY (Q8ZMB5) Protease 3 precursor (EC 3.4.24.55) (Protease III)|
           (Pitrilysin) (Protease pi)
          Length = 962

 Score = 29.3 bits (64), Expect = 7.5
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = -2

Query: 154 LEDTLADTDTVVTGGSPVELLHTTITDQRSVERREIV 44
           +E   AD+D +V G S V  +  T+TD+    R E+V
Sbjct: 333 VEGISADSDPIVNGNSGVFAISATLTDKGLANRDEVV 369

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>PTRA_SALTI (Q8Z418) Protease 3 precursor (EC 3.4.24.55) (Protease III)|
           (Pitrilysin) (Protease pi)
          Length = 962

 Score = 29.3 bits (64), Expect = 7.5
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = -2

Query: 154 LEDTLADTDTVVTGGSPVELLHTTITDQRSVERREIV 44
           +E   AD+D +V G S V  +  T+TD+    R E+V
Sbjct: 333 VEGISADSDPIVNGNSGVFAISATLTDKGLANRDEVV 369

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>RPOA_ANAMM (Q5PA81) DNA-directed RNA polymerase alpha chain (EC 2.7.7.6) (RNAP|
           alpha subunit) (Transcriptase alpha chain) (RNA
           polymerase alpha subunit)
          Length = 366

 Score = 29.3 bits (64), Expect = 7.5
 Identities = 15/57 (26%), Positives = 32/57 (56%)
 Frame = +2

Query: 173 ESVVKIVDTFPGQSIDFFGALRARVYDDEVRKWVGSTGIENIGKRLVNSRDGPVTFE 343
           + +V  V+T    S D   A+ ARV  D+++ ++GS  +E   ++ V+  +G + ++
Sbjct: 224 DRLVISVETDGSISPDEAVAVSARVLQDQLQSFIGSEEVEGESRKKVDKEEGALPYD 280

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>GIDA_LACPL (Q88RX6) tRNA uridine 5-carboxymethylaminomethyl modification|
           enzyme gidA (Glucose-inhibited division protein A)
          Length = 636

 Score = 28.9 bits (63), Expect = 9.7
 Identities = 20/69 (28%), Positives = 33/69 (47%), Gaps = 4/69 (5%)
 Frame = -2

Query: 340 EGHGP--VPRVHQPLANVLDSGRADPLAHLIVVHPSTQSTEK--VNGLSWEGVDDLDDRL 173
           EG GP   P +   +    D  R     H + + P  ++T++  V GLS    +++  R+
Sbjct: 278 EGVGPRYCPSIEDKIVRFADKKR-----HQLFLEPEGRNTDEWYVQGLSTSMPEEVQQRI 332

Query: 172 VTDIVGLED 146
           +  I GLED
Sbjct: 333 LHSIKGLED 341

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>EF1A3_XENLA (P17508) Elongation factor 1-alpha, oocyte form (EF-1-alpha-O1)|
           (EF-1AO1)
          Length = 461

 Score = 28.9 bits (63), Expect = 9.7
 Identities = 23/78 (29%), Positives = 32/78 (41%), Gaps = 8/78 (10%)
 Frame = +2

Query: 332 VTFEQPKMTVE-KLLEYGHMLVQEQ-------DNVKRVQLADTYMSQAALGDANQDAMKT 487
           VTF    +T E K +E  H  + E         NVK + + D      A    N   M+ 
Sbjct: 278 VTFAPSNVTTEVKSVEMHHEALVEALPGDNVGFNVKNISVKDIRRGNVAGDSKNDPPMQA 337

Query: 488 GSFYG*KILHTHPPSLAA 541
           GSF    I+  HP  ++A
Sbjct: 338 GSFTAQVIILNHPGQISA 355

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>PBPB_BACSU (Q07868) Penicillin-binding protein 2B (PBP-2B)|
          Length = 716

 Score = 28.9 bits (63), Expect = 9.7
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = +2

Query: 251 DDEVRKWVGSTGIENIGKRLVNSRDGPVTFEQPK 352
           D+E  +  G+ G+E +  + +  RDG VT+E  K
Sbjct: 186 DEETNEISGAMGLEKVLDKYLKERDGYVTYESDK 219

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>VID27_YEAST (P40157) Vacuolar import and degradation protein VID27|
          Length = 782

 Score = 28.9 bits (63), Expect = 9.7
 Identities = 14/36 (38%), Positives = 22/36 (61%)
 Frame = +2

Query: 113 TRDDRIGVCKGIFQTDNVSDESVVKIVDTFPGQSID 220
           TRD+RIGV K   + D++   + +K +    G+SID
Sbjct: 435 TRDNRIGVFKTDDEDDSLEFVAAIKNISNLGGKSID 470

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>GIDA_BORBU (P53362) tRNA uridine 5-carboxymethylaminomethyl modification|
           enzyme gidA (Glucose-inhibited division protein A)
          Length = 621

 Score = 28.9 bits (63), Expect = 9.7
 Identities = 20/67 (29%), Positives = 32/67 (47%), Gaps = 4/67 (5%)
 Frame = -2

Query: 337 GHGP--VPRVHQPLANVLDSGRADPLAHLIVVHPSTQSTEKV--NGLSWEGVDDLDDRLV 170
           G+GP   P +   +    D  R     H I + P   +TE++  NGLS    +++  +L+
Sbjct: 268 GNGPRYCPSIEDKIVKFKDKDR-----HQIFIEPEGFNTEEMYLNGLSSSLPENIQQKLI 322

Query: 169 TDIVGLE 149
             I GLE
Sbjct: 323 NSIEGLE 329


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 76,836,568
Number of Sequences: 219361
Number of extensions: 1470091
Number of successful extensions: 4713
Number of sequences better than 10.0: 40
Number of HSP's better than 10.0 without gapping: 4553
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4711
length of database: 80,573,946
effective HSP length: 105
effective length of database: 57,541,041
effective search space used: 4315578075
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result