>PSBR_SPIOL (P10690) Photosystem II 10 kDa polypeptide, chloroplast precursor|
          Length = 140

 Score =  124 bits (312), Expect = 7e-29
 Identities = 61/91 (67%), Positives = 69/91 (75%), Gaps = 2/91 (2%)
 Frame = +3

Query: 3   VDKPLGLGGGLTV--DIDANGRKVGKKGVYQFVDKYGANVDGYSPIYTPEEWSESGDRYA 176
           VDKPLG+GGG+ +   +D++GRK   KGVYQFVDKYGANVDGYSPIY  EEW+ +GD YA
Sbjct: 49  VDKPLGIGGGMKLRDGVDSSGRKPTGKGVYQFVDKYGANVDGYSPIYNEEEWAPTGDVYA 108

Query: 177 GGTTGLLIWAVTXXXXXXXXXXXVYNTSALA 269
           GGTTGLLIWAVT           VYNTSALA
Sbjct: 109 GGTTGLLIWAVTLAGLLAGGALLVYNTSALA 139

>PSBR_SOLTU (P06183) Photosystem II 10 kDa polypeptide, chloroplast precursor|
           (Light-inducible tissue-specific ST-LS1 protein)
          Length = 138

 Score =  114 bits (285), Expect = 9e-26
 Identities = 56/90 (62%), Positives = 63/90 (70%), Gaps = 2/90 (2%)
 Frame = +3

Query: 6   DKPLGLGGGLTV--DIDANGRKVGKKGVYQFVDKYGANVDGYSPIYTPEEWSESGDRYAG 179
           DKP G+ G + +   +DA+GRK   KGVYQ+VDKYGANVDGYSPIY  +EWS SGD Y G
Sbjct: 48  DKPYGINGSMALRDGVDASGRKPKGKGVYQYVDKYGANVDGYSPIYNTDEWSPSGDVYVG 107

Query: 180 GTTGLLIWAVTXXXXXXXXXXXVYNTSALA 269
           GTTGL IWAVT           VYNTSALA
Sbjct: 108 GTTGLAIWAVTLVGILAGGALLVYNTSALA 137

>PSBR_LYCES (Q40163) Photosystem II 10 kDa polypeptide, chloroplast precursor|
          Length = 138

 Score =  114 bits (285), Expect = 9e-26
 Identities = 56/90 (62%), Positives = 63/90 (70%), Gaps = 2/90 (2%)
 Frame = +3

Query: 6   DKPLGLGGGLTV--DIDANGRKVGKKGVYQFVDKYGANVDGYSPIYTPEEWSESGDRYAG 179
           DKP G+ G + +   +DA+GRK   KGVYQ+VDKYGANVDGYSPIY  +EWS SGD Y G
Sbjct: 48  DKPYGINGSMALRDGVDASGRKPKGKGVYQYVDKYGANVDGYSPIYNTDEWSPSGDVYVG 107

Query: 180 GTTGLLIWAVTXXXXXXXXXXXVYNTSALA 269
           GTTGL IWAVT           VYNTSALA
Sbjct: 108 GTTGLAIWAVTLLGILAGGALLVYNTSALA 137

>PSBR_TOBAC (Q40519) Photosystem II 10 kDa polypeptide, chloroplast precursor|
           (PII10)
          Length = 136

 Score =  113 bits (282), Expect = 2e-25
 Identities = 55/90 (61%), Positives = 64/90 (71%), Gaps = 2/90 (2%)
 Frame = +3

Query: 6   DKPLGLGGGLTV--DIDANGRKVGKKGVYQFVDKYGANVDGYSPIYTPEEWSESGDRYAG 179
           DKP G+ G +++   +DA+GRK   KGVYQFVDKYGANVDGYSPIY  ++WS SGD Y G
Sbjct: 46  DKPYGINGSMSLRDGVDASGRKQKGKGVYQFVDKYGANVDGYSPIYNTDDWSPSGDVYVG 105

Query: 180 GTTGLLIWAVTXXXXXXXXXXXVYNTSALA 269
           GTTGL IWAVT           V+NTSALA
Sbjct: 106 GTTGLAIWAVTLVGILAGGALLVFNTSALA 135

>PSBR_HORVU (Q40070) Photosystem II 10 kDa polypeptide, chloroplast precursor|
          Length = 138

 Score =  111 bits (277), Expect = 8e-25
 Identities = 55/89 (61%), Positives = 61/89 (68%), Gaps = 2/89 (2%)
 Frame = +3

Query: 9   KPLGLGGGLTVD--IDANGRKVGKKGVYQFVDKYGANVDGYSPIYTPEEWSESGDRYAGG 182
           +P G GGG+     +DA+GR    KGVYQF DKYGANVDGYSPIYTPEEWS SGD Y GG
Sbjct: 49  QPYGPGGGVAFKEGVDASGRVAKGKGVYQFADKYGANVDGYSPIYTPEEWSPSGDVYVGG 108

Query: 183 TTGLLIWAVTXXXXXXXXXXXVYNTSALA 269
            TGL +WAVT           VY+TSALA
Sbjct: 109 KTGLFLWAVTLAGILLGGALLVYSTSALA 137

>PSBR_BRACM (P49108) Photosystem II 10 kDa polypeptide, chloroplast precursor|
          Length = 141

 Score =  108 bits (270), Expect = 5e-24
 Identities = 54/90 (60%), Positives = 61/90 (67%), Gaps = 2/90 (2%)
 Frame = +3

Query: 6   DKPLGLGGGLTV--DIDANGRKVGKKGVYQFVDKYGANVDGYSPIYTPEEWSESGDRYAG 179
           DKP G+ G + +   +DA+GRK    GVY+FVDKYGANVDGYSPIY  +EWS SGD Y G
Sbjct: 51  DKPFGVNGSMDLRDGVDASGRKGKGYGVYKFVDKYGANVDGYSPIYNEDEWSASGDVYKG 110

Query: 180 GTTGLLIWAVTXXXXXXXXXXXVYNTSALA 269
           G TGL IWAVT           VYNTSALA
Sbjct: 111 GVTGLAIWAVTLAGILAGGALLVYNTSALA 140

>PSBR_ARATH (P27202) Photosystem II 10 kDa polypeptide, chloroplast precursor|
          Length = 140

 Score =  107 bits (266), Expect = 1e-23
 Identities = 53/90 (58%), Positives = 60/90 (66%), Gaps = 2/90 (2%)
 Frame = +3

Query: 6   DKPLGLGGGLTV--DIDANGRKVGKKGVYQFVDKYGANVDGYSPIYTPEEWSESGDRYAG 179
           DKP G+ G + +   +DA+GRK    GVY++VDKYGANVDGYSPIY   EWS SGD Y G
Sbjct: 50  DKPFGINGSMDLRDGVDASGRKGKGYGVYKYVDKYGANVDGYSPIYNENEWSASGDVYKG 109

Query: 180 GTTGLLIWAVTXXXXXXXXXXXVYNTSALA 269
           G TGL IWAVT           VYNTSALA
Sbjct: 110 GVTGLAIWAVTLAGILAGGALLVYNTSALA 139

>PSBR_WHEAT (P12358) Photosystem II 10 kDa polypeptide (Fragment)|
          Length = 24

 Score = 38.1 bits (87), Expect = 0.008
 Identities = 17/17 (100%), Positives = 17/17 (100%)
 Frame = +3

Query: 3  VDKPLGLGGGLTVDIDA 53
          VDKPLGLGGGLTVDIDA
Sbjct: 8  VDKPLGLGGGLTVDIDA 24

>VAP1_STRPU (Q06155) Vesicle-associated protein (VAP-1) (Fragment)|
          Length = 433

 Score = 28.9 bits (63), Expect = 5.0
 Identities = 19/38 (50%), Positives = 21/38 (55%)
 Frame = +3

Query: 18  GLGGGLTVDIDANGRKVGKKGVYQFVDKYGANVDGYSP 131
           GLGGGL  DIDANG  V  KG     D  G ++D   P
Sbjct: 225 GLGGGL--DIDANGPDVDIKGPKVGGDISGPDLDVSGP 260



 Score = 28.9 bits (63), Expect = 5.0
 Identities = 19/38 (50%), Positives = 21/38 (55%)
 Frame = +3

Query: 18  GLGGGLTVDIDANGRKVGKKGVYQFVDKYGANVDGYSP 131
           GLGGGL  DIDANG  V  KG     D  G ++D   P
Sbjct: 118 GLGGGL--DIDANGPDVDIKGPKVGGDISGPDLDVSGP 153

>MUC2_HUMAN (Q02817) Mucin-2 precursor (Intestinal mucin 2)|
          Length = 5179

 Score = 28.9 bits (63), Expect = 5.0
 Identities = 16/47 (34%), Positives = 21/47 (44%), Gaps = 7/47 (14%)
 Frame = -1

Query: 121  PSTLAPYLSTNW*TPF-------LPTFLPLASMSTVKPPPSPRGLST 2
            P T  P  +T   TP         PT  P+ + +TV P P+P G  T
Sbjct: 1895 PPTTTPITTTTTVTPTPTPTGTQTPTTTPITTTTTVTPTPTPTGTQT 1941



 Score = 28.5 bits (62), Expect = 6.6
 Identities = 14/40 (35%), Positives = 21/40 (52%)
 Frame = -1

Query: 121  PSTLAPYLSTNW*TPFLPTFLPLASMSTVKPPPSPRGLST 2
            P+T+    + N   P  PT  P+ + +TV P P+P G  T
Sbjct: 1882 PTTMTTTTTEN---PTPPTTTPITTTTTVTPTPTPTGTQT 1918

>TOR1_YEAST (P35169) Phosphatidylinositol 3-kinase TOR1 (EC 2.7.1.137)|
            (PtdIns-3-kinase TOR1) (PI3-kinase TOR1) (PI3K TOR1)
          Length = 2470

 Score = 28.5 bits (62), Expect = 6.6
 Identities = 11/33 (33%), Positives = 21/33 (63%)
 Frame = +3

Query: 48   DANGRKVGKKGVYQFVDKYGANVDGYSPIYTPE 146
            D +  KV  + V + ++ +G N++GYS + TP+
Sbjct: 1046 DKSSDKVLSRRVLRLLESFGPNLEGYSHLITPK 1078

>GATB_ARCFU (O28164) Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B|
           (EC 6.3.5.-) (Asp/Glu-ADT subunit B)
          Length = 471

 Score = 28.5 bits (62), Expect = 6.6
 Identities = 11/31 (35%), Positives = 20/31 (64%)
 Frame = +3

Query: 6   DKPLGLGGGLTVDIDANGRKVGKKGVYQFVD 98
           D+PL LGG +T+++D   +++  K V+   D
Sbjct: 97  DRPLALGGYVTIELDGQEKRIQLKRVHMEED 127

>DYH5_HUMAN (Q8TE73) Ciliary dynein heavy chain 5 (Axonemal beta dynein heavy|
           chain 5) (HL1)
          Length = 4624

 Score = 28.1 bits (61), Expect = 8.6
 Identities = 13/42 (30%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
 Frame = +3

Query: 84  YQFV-DKYGANVDGYSPIYTPEEWSESGDRYAGGTTGLLIWA 206
           YQ + + YGA++D  S +YT +++     R      G ++WA
Sbjct: 589 YQLILENYGADIDMISKLYTKQKYDPPLARNQPPIAGKILWA 630


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 43,401,869
Number of Sequences: 219361
Number of extensions: 679606
Number of successful extensions: 2325
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 2164
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2324
length of database: 80,573,946
effective HSP length: 100
effective length of database: 58,637,846
effective search space used: 2228238148
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)