>AOX4_ARATH (Q56X52) Alternative oxidase 4, chloroplast precursor (EC 1.-.-.-)|
           (Protein IMMUTANS) (Plastid terminal oxidase)
          Length = 351

 Score =  150 bits (378), Expect = 9e-37
 Identities = 75/116 (64%), Positives = 82/116 (70%)
 Frame = +1

Query: 37  EEGGFDEELTLAGEDGDWVVRLEQSFNVFXXXXXXXXXXXXYRDRDYARFFVLETIARVP 216
           EE       T A E   W+++LEQ  NVF            YRDR YARFFVLETIARVP
Sbjct: 85  EEPNMSSSSTSAFET--WIIKLEQGVNVFLTDSVIKILDTLYRDRTYARFFVLETIARVP 142

Query: 217 YFAFISVLHLYETFGWSRRADNIKVHFAESMNEFHHLLIMEALGGNSVWIDRFLAR 384
           YFAF+SVLH+YETFGW RRAD +KVHFAES NE HHLLIME LGGNS W DRFLA+
Sbjct: 143 YFAFMSVLHMYETFGWWRRADYLKVHFAESWNEMHHLLIMEELGGNSWWFDRFLAQ 198

>AOX3_SOYBN (O03376) Alternative oxidase 3, mitochondrial precursor (EC|
           1.-.-.-)
          Length = 326

 Score = 30.8 bits (68), Expect = 0.83
 Identities = 24/73 (32%), Positives = 33/73 (45%)
 Frame = +1

Query: 160 YRDRDYARFFVLETIARVPYFAFISVLHLYETFGWSRRADNIKVHFAESMNEFHHLLIME 339
           +++R      +LETIA VP      +LHL     +      IK    E+ NE  HL+ M 
Sbjct: 143 FKERYGCHAMMLETIAAVPGMVGGMLLHLKSLRKFQHSGGWIKALLEEAENERMHLMTMV 202

Query: 340 ALGGNSVWIDRFL 378
            L   S W +R L
Sbjct: 203 ELVKPS-WHERLL 214

>AOX2_SOYBN (Q41266) Alternative oxidase 2, mitochondrial precursor (EC|
           1.-.-.-)
          Length = 333

 Score = 30.8 bits (68), Expect = 0.83
 Identities = 23/73 (31%), Positives = 33/73 (45%)
 Frame = +1

Query: 160 YRDRDYARFFVLETIARVPYFAFISVLHLYETFGWSRRADNIKVHFAESMNEFHHLLIME 339
           ++ R   R  +LET+A VP      +LHL     + +    IK    E+ NE  HL+ M 
Sbjct: 150 FKRRYGCRAMMLETVAAVPGMVGGMLLHLRSLRKFQQSGGWIKALLEEAENERMHLMTMV 209

Query: 340 ALGGNSVWIDRFL 378
            L     W +R L
Sbjct: 210 EL-VKPKWYERLL 221

>AOX2_ARATH (O22049) Alternative oxidase 2, mitochondrial precursor (EC|
           1.-.-.-)
          Length = 353

 Score = 30.0 bits (66), Expect = 1.4
 Identities = 23/73 (31%), Positives = 32/73 (43%)
 Frame = +1

Query: 160 YRDRDYARFFVLETIARVPYFAFISVLHLYETFGWSRRADNIKVHFAESMNEFHHLLIME 339
           ++ R   R  +LET+A VP      +LHL     +      IK    E+ NE  HL+ M 
Sbjct: 170 FQRRYGCRAMMLETVAAVPGMVGGMLLHLKSIRKFEHSGGWIKALLEEAENERMHLMTMM 229

Query: 340 ALGGNSVWIDRFL 378
            L     W +R L
Sbjct: 230 EL-VKPKWYERLL 241

>TRMB_THEMA (Q9X027) tRNA (guanine-N(7)-)-methyltransferase (EC 2.1.1.33)|
           (tRNA(m7G46)-methyltransferase)
          Length = 313

 Score = 30.0 bits (66), Expect = 1.4
 Identities = 13/28 (46%), Positives = 20/28 (71%), Gaps = 2/28 (7%)
 Frame = +1

Query: 31  SGEEGGFDEE--LTLAGEDGDWVVRLEQ 108
           S +EGGF +   L L+G DG WV++L++
Sbjct: 259 STDEGGFQQVYYLNLSGRDGKWVLKLDE 286

>AOX_HANAN (Q00912) Alternative oxidase, mitochondrial precursor (EC 1.-.-.-)|
          Length = 342

 Score = 29.6 bits (65), Expect = 1.8
 Identities = 21/66 (31%), Positives = 29/66 (43%)
 Frame = +1

Query: 181 RFFVLETIARVPYFAFISVLHLYETFGWSRRADNIKVHFAESMNEFHHLLIMEALGGNSV 360
           R   LE++A VP      + HL+      R    I+    E+ NE  HLL    + GN  
Sbjct: 137 RCIFLESVAGVPGMVAAFIRHLHSLRLLKRDKAWIETLLDEAYNERMHLLTFIKI-GNPS 195

Query: 361 WIDRFL 378
           W  RF+
Sbjct: 196 WFTRFI 201

>TAL_GLOVI (Q7NK81) Transaldolase (EC 2.2.1.2)|
          Length = 389

 Score = 29.3 bits (64), Expect = 2.4
 Identities = 20/64 (31%), Positives = 29/64 (45%)
 Frame = -1

Query: 231 YKREIGHPGDGLEHEEPGVVAVAVQNIEYQDDGVREEYVEGLLEPDDPVAVLAGEGELLV 52
           YK+E G   D   HE+PGVV+V      Y+  G + + +         +  LAG   L +
Sbjct: 190 YKKETGR--DYEPHEDPGVVSVTTIYNYYKKFGYQTQVMGASFRNIGEIVELAGCDLLTI 247

Query: 51  EPPL 40
            P L
Sbjct: 248 SPKL 251

>ERA_LEIXX (Q6AEC6) GTP-binding protein era homolog|
          Length = 297

 Score = 29.3 bits (64), Expect = 2.4
 Identities = 16/48 (33%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
 Frame = -1

Query: 204 DGLEHEEPGVVAVAVQN-IEYQDDGVREEYVEGLLEPDDPVAVLAGEG 64
           DG+E E P  +AV + + +E  D  + E Y    +E D   A++ G+G
Sbjct: 203 DGVEDELPHSLAVTIDDLVERDDKDLLEIYANLFVERDSQKAIVIGKG 250

>AOX1_MANIN (Q40294) Alternative oxidase, mitochondrial precursor (EC 1.-.-.-)|
          Length = 318

 Score = 29.3 bits (64), Expect = 2.4
 Identities = 23/73 (31%), Positives = 32/73 (43%)
 Frame = +1

Query: 160 YRDRDYARFFVLETIARVPYFAFISVLHLYETFGWSRRADNIKVHFAESMNEFHHLLIME 339
           ++ R   R  +LET+A VP      +LHL       +    IK    E+ NE  HL+ M 
Sbjct: 135 FQRRYGCRAMMLETVAAVPGMVGGMLLHLKSLRKLEQSGGWIKALLEEAENERMHLMTMV 194

Query: 340 ALGGNSVWIDRFL 378
            L     W +R L
Sbjct: 195 EL-VQPKWYERLL 206

>SAT1_SCHPO (O60183) Protein sat1|
          Length = 550

 Score = 28.5 bits (62), Expect = 4.1
 Identities = 18/50 (36%), Positives = 26/50 (52%)
 Frame = -1

Query: 240 KHRYKREIGHPGDGLEHEEPGVVAVAVQNIEYQDDGVREEYVEGLLEPDD 91
           K +Y++ I    DG  +EE G         E+QD G+R E  E +LE +D
Sbjct: 262 KKKYEQHIKKLLDGESNEEGGG--------EFQDHGMRSEINEEVLEEED 303

>AF9_ASHGO (Q755P0) Protein AF-9 homolog|
          Length = 208

 Score = 28.1 bits (61), Expect = 5.4
 Identities = 12/28 (42%), Positives = 15/28 (53%), Gaps = 5/28 (17%)
 Frame = +1

Query: 259 GWSRRADNIKVHFAESMNE-----FHHL 327
           GW     N+KVHF +  NE     +HHL
Sbjct: 88  GWGEFEINVKVHFVDEANEKMLNFYHHL 115

>PDE3B_MOUSE (Q61409) cGMP-inhibited 3',5'-cyclic phosphodiesterase B (EC|
           3.1.4.17) (Cyclic GMP-inhibited phosphodiesterase B)
           (CGI-PDE B) (CGIPDE1) (Fragment)
          Length = 799

 Score = 27.7 bits (60), Expect = 7.0
 Identities = 15/62 (24%), Positives = 28/62 (45%)
 Frame = -1

Query: 384 PRKKAINPYRVATQRFHD*EVMELIHAFGKVHFDVVSSSRPSKGLIQVKHRYKREIGHPG 205
           P ++ +N +R     + D      +HA   +H     ++RP  GL Q+ + ++ E     
Sbjct: 406 PTQEFMNYFRALENGYRDIPYHNRVHATDVLHAVWYLTTRPIPGLPQIHNNHETETKADS 465

Query: 204 DG 199
           DG
Sbjct: 466 DG 467

>SYR_SULSO (Q97ZN1) Arginyl-tRNA synthetase (EC 6.1.1.19) (Arginine--tRNA|
           ligase) (ArgRS)
          Length = 625

 Score = 27.3 bits (59), Expect = 9.1
 Identities = 17/54 (31%), Positives = 26/54 (48%)
 Frame = +1

Query: 187 FVLETIARVPYFAFISVLHLYETFGWSRRADNIKVHFAESMNEFHHLLIMEALG 348
           FV+  IA   Y   I +    E  G+SR A+N+ +H++  M     L +   LG
Sbjct: 388 FVINVIAEEQYIPQIQLRGALELLGYSRFAENL-LHYSYGMVNIQGLRMSGRLG 440

>Y4BN_RHISN (P55381) Hypothetical 47.6 kDa protein y4bN|
          Length = 431

 Score = 27.3 bits (59), Expect = 9.1
 Identities = 15/54 (27%), Positives = 23/54 (42%), Gaps = 6/54 (11%)
 Frame = -1

Query: 318 ELIHAFGKVHFDVV------SSSRPSKGLIQVKHRYKREIGHPGDGLEHEEPGV 175
           +L+   G + FD V         RPS G++ + H Y   +   G G  +  P V
Sbjct: 145 DLVDVGGTLIFDPVVARLRGGEDRPSAGVLTLNHNYLNRLFTAGSGTSYSAPRV 198

>AOX_NEUCR (Q01355) Alternative oxidase, mitochondrial precursor (EC 1.-.-.-)|
           (ALTOX)
          Length = 362

 Score = 27.3 bits (59), Expect = 9.1
 Identities = 19/50 (38%), Positives = 23/50 (46%)
 Frame = +1

Query: 181 RFFVLETIARVPYFAFISVLHLYETFGWSRRADNIKVHFAESMNEFHHLL 330
           RF  LE+IA VP      + HL+      R    I+    ES NE  HLL
Sbjct: 158 RFIFLESIAGVPGMVAGMLRHLHSLRRLKRDNGWIETLLEESYNERMHLL 207

>AOX_GELSS (Q8J1Z2) Alternative oxidase, mitochondrial precursor (EC 1.-.-.-)|
          Length = 362

 Score = 27.3 bits (59), Expect = 9.1
 Identities = 19/50 (38%), Positives = 23/50 (46%)
 Frame = +1

Query: 181 RFFVLETIARVPYFAFISVLHLYETFGWSRRADNIKVHFAESMNEFHHLL 330
           RF  LE+IA VP      + HL+      R    I+    ES NE  HLL
Sbjct: 158 RFIFLESIAGVPGMVAGMLRHLHSLRRLKRDNGWIETLLEESYNERMHLL 207

>MUG2_MOUSE (P28666) Murinoglobulin-2 precursor (MuG2)|
          Length = 1451

 Score = 27.3 bits (59), Expect = 9.1
 Identities = 17/57 (29%), Positives = 26/57 (45%), Gaps = 4/57 (7%)
 Frame = +1

Query: 187  FVLETIARVPYFAFISVLHLYETFGWSRRADNIKVHFAESMNEFH----HLLIMEAL 345
            FVL++ A+   F FI   H+   F W  +       F  S + FH    H ++ +AL
Sbjct: 1046 FVLKSFAQARAFIFIDESHITHAFTWLSQQQKDNGCFRSSGSLFHNDIKHPVVSKAL 1102

>AOX2_TOBAC (Q40578) Alternative oxidase 2, mitochondrial precursor (EC|
           1.-.-.-)
          Length = 297

 Score = 27.3 bits (59), Expect = 9.1
 Identities = 23/74 (31%), Positives = 33/74 (44%), Gaps = 1/74 (1%)
 Frame = +1

Query: 160 YRDRDYARFFVLETIARVPYFAFISVLHLYETFGWSRRADNIKVHFAESMNEFHHLL-IM 336
           ++ R   R  +LET+A VP      +LH      + +    IK    E+ NE  HL+  M
Sbjct: 114 FQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEQSGGWIKALLEEAENERMHLMTFM 173

Query: 337 EALGGNSVWIDRFL 378
           E    N  W +R L
Sbjct: 174 EVAKPN--WYERAL 185

>AF9_KLULA (Q6CIV8) Protein AF-9 homolog|
          Length = 220

 Score = 27.3 bits (59), Expect = 9.1
 Identities = 14/43 (32%), Positives = 22/43 (51%), Gaps = 5/43 (11%)
 Frame = +1

Query: 259 GWSRRADNIKVHFAESMNE-----FHHLLIMEALGGNSVWIDR 372
           GW     NIK++FA+  NE     +HHL +   +   +  I+R
Sbjct: 89  GWGEFEINIKIYFADVSNEKMLNFYHHLRLHPYINPETKEIER 131

>MIZF_MOUSE (Q8K1K9) MBD2-interacting zinc finger protein (Methyl-CpG-binding|
           protein 2-interacting zinc finger protein)
          Length = 503

 Score = 27.3 bits (59), Expect = 9.1
 Identities = 14/54 (25%), Positives = 28/54 (51%)
 Frame = -1

Query: 249 IQVKHRYKREIGHPGDGLEHEEPGVVAVAVQNIEYQDDGVREEYVEGLLEPDDP 88
           ++ KH++K   GHP    +  E G   + +Q + Y+   + ++ ++ L E  DP
Sbjct: 360 LRKKHQFKWPSGHPRFRYKEHEDGY--MRLQLVRYESVELTQQLLQQLQEGSDP 411


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 45,689,619
Number of Sequences: 219361
Number of extensions: 841204
Number of successful extensions: 2666
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 2633
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2666
length of database: 80,573,946
effective HSP length: 103
effective length of database: 57,979,763
effective search space used: 1391514312
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)