Clone Information

BLAST Search Result

Clone Name	baak4f19
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	gb\|AF274001.1\|AF274001 Triticum aestivum oxidase (IM1) mRNA, par...	547	e-153
2	ref\|XM_474279.1\| Oryza sativa (japonica cultivar-group), predic...	178	9e-42
3	gb\|AF085174.3\| Oryza sativa (japonica cultivar-group) oxidase (I...	178	9e-42
4	dbj\|AK067891.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	178	9e-42
5	ref\|NM_185204.1\| Oryza sativa (japonica cultivar-group), mRNA	137	3e-29
6	emb\|AL606619.3\|OSJN00032 Oryza sativa genomic DNA, chromosome 4,...	107	3e-20
7	dbj\|AP008210.1\| Oryza sativa (japonica cultivar-group) genomic D...	107	3e-20
8	emb\|AL732340.3\| Oryza sativa genomic DNA, chromosome 4, BAC clon...	107	3e-20
9	emb\|AL732346.2\| Oryza sativa genomic DNA, chromosome 4, BAC clon...	107	3e-20
10	gb\|DP000009.1\| Oryza sativa (japonica cultivar-group) chromosome 3	92	2e-15
11	dbj\|AP008209.1\| Oryza sativa (japonica cultivar-group) genomic D...	92	2e-15
12	gb\|AC099324.5\| Oryza sativa chromosome 3 BAC OSJNBb0043P23 genom...	92	2e-15
13	dbj\|AK073859.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	92	2e-15
14	gb\|AF302931.1\|AF302931 Lycopersicon esculentum plastid quinol ox...	64	4e-07
15	gb\|AF177980.1\|AF177980 Lycopersicon esculentum plastid terminal ...	64	4e-07
16	gb\|AF302932.1\|AF302932 Lycopersicon esculentum plastid quinol ox...	60	6e-06
17	gb\|AF177979.1\|AF177979 Lycopersicon esculentum plastid terminal ...	60	6e-06
18	ref\|NM_118352.2\| Arabidopsis thaliana IM (IMMUTANS) AT4G22260 (I...	54	3e-04
19	gb\|BT000558.1\| Arabidopsis thaliana unknown protein (At4g22260/...	54	3e-04
20	gb\|AF339717.1\| Arabidopsis thaliana unknown protein (At4g22260) ...	54	3e-04
21	gb\|AF326898.1\| Arabidopsis thaliana unknown protein (At4g22260) ...	54	3e-04
22	gb\|AY045699.1\| Arabidopsis thaliana AT4g22260/T10I14_90 mRNA, co...	54	3e-04
23	gb\|AF324663.2\|AF324663 Arabidopsis thaliana AT4g22260 (AT4g22260...	54	3e-04
24	emb\|AJ004881.1\|ATJ004881 Arabidopsis thaliana mRNA for Immutans ...	54	3e-04
25	gb\|AF098072.1\|AF098072 Arabidopsis thaliana IMMUTANS (IM) mRNA, ...	54	3e-04
26	gb\|AF177981.1\|AF177981 Capsicum annuum plastid terminal oxidase ...	46	0.083
27	gb\|CP000249.1\| Frankia sp. CcI3, complete genome	44	0.33
28	emb\|AL161557.2\|ATCHRIV57 Arabidopsis thaliana DNA chromosome 4, ...	42	1.3
29	emb\|AL021712.2\|ATT10I14 Arabidopsis thaliana DNA chromosome 4, B...	42	1.3
30	gb\|CP000267.1\| Rhodoferax ferrireducens DSM 15236, complete genome	42	1.3
31	ref\|XM_714123.1\| Candida albicans SC5314 putative H+-pantothenat...	40	5.1
32	ref\|XM_714006.1\| Candida albicans SC5314 putative H+-pantothenat...	40	5.1
33	gb\|CP000058.1\| Pseudomonas syringae pv. phaseolicola 1448A, comp...	40	5.1
34	gb\|AC107715.5\| Mus musculus chromosome 10, clone RP24-376I19, co...	40	5.1
35	emb\|AJ973133.1\| Andrographis paniculata partial ggps gene for pu...	40	5.1
36	gb\|AC132807.3\| Homo sapiens chromosome 3 clone RP11-147G2, compl...	40	5.1
37	gb\|AC158602.6\| Mus musculus 10 BAC RP23-136G23 (Roswell Park Can...	40	5.1
38	dbj\|AP008215.1\| Oryza sativa (japonica cultivar-group) genomic D...	40	5.1
39	gb\|AC137672.2\| Homo sapiens chromosome 3 clone RP11-72I12, compl...	40	5.1
40	dbj\|AP005689.3\| Oryza sativa (japonica cultivar-group) genomic D...	40	5.1
41	dbj\|AP005685.3\| Oryza sativa (japonica cultivar-group) genomic D...	40	5.1
42	dbj\|AB049083.1\| Youngia japonica YjGGPPs1 mRNA for putative GGPP...	40	5.1
43	dbj\|AB046107.1\| Sonchus oleraceus SoGGPPS mRNA for putative GGPP...	40	5.1

>gb|AF274001.1|AF274001 Triticum aestivum oxidase (IM1) mRNA, partial cds
          Length = 1073

 Score =  547 bits (276), Expect = e-153
 Identities = 321/336 (95%)
 Strand = Plus / Plus

                                                                       
Query: 49  ttcgacgaggagctcaccctcgccggcgaggacggcgactgggtcgtcaggctcgagcag 108
           ||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||
Sbjct: 25  ttcgacgaggagctcaccctcgccggcgaggacggcgactgggtcgtcagattcgagcag 84

                                                                       
Query: 109 tccttcaacgtattcctcacggacaccgtcatcctgatactcgatattctgtaccgcgac 168
           ||||||||||||||||||||||| || |||||| | ||||||||||||||||| || |||
Sbjct: 85  tccttcaacgtattcctcacggatactgtcatctttatactcgatattctgtatcgtgac 144

                                                                       
Query: 169 cgcgactacgccaggttcttcgtgctcgagaccatcgccagggtgccctatttcgcgttt 228
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 145 cgcgactacgcaaggttcttcgtgctcgagaccatcgccagggtgccctatttcgcgttt 204

                                                                       
Query: 229 atatcggtgcttcacttgtatgagacctttggatggtcgagaagagctgacaacatcaaa 288
           |||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||
Sbjct: 205 atatcggtgcttcacttgtacgagacctttggatggtcgagaagagctgataacatcaaa 264

                                                                       
Query: 289 gtgcactttgccgaaagcatgaatgagttccatcacctcttaatcatggaagcgttgggt 348
           ||||||||||| |||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct: 265 gtgcactttgctgaaagcatgaatgagttccatcacctcttaatcatggaggcattgggt 324

                                               
Query: 349 ggcaactctgtatggattgatcgctttcttgcgcgg 384
           ||||||||||||||| ||||||||||||||||||||
Sbjct: 325 ggcaactctgtatggcttgatcgctttcttgcgcgg 360

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>ref|XM_474279.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1011

 Score =  178 bits (90), Expect = 9e-42
 Identities = 234/282 (82%)
 Strand = Plus / Plus

                                                                       
Query: 99  gctcgagcagtccttcaacgtattcctcacggacaccgtcatcctgatactcgatattct 158
           ||||||||||||| | ||| | |||||||||||  | ||||||  |||||| |||    |
Sbjct: 267 gctcgagcagtccgtgaacattttcctcacggagtcagtcatcacgatacttgatggatt 326

                                                                       
Query: 159 gtaccgcgaccgcgactacgccaggttcttcgtgctcgagaccatcgccagggtgcccta 218
           |||||| |||||| ||||||| || || |||||  | ||||| || || |||||||| ||
Sbjct: 327 gtaccgtgaccgcaactacgctagatttttcgtattggagacgattgctagggtgccgta 386

                                                                       
Query: 219 tttcgcgtttatatcggtgcttcacttgtatgagacctttggatggtcgagaagagctga 278
           ||| |||||||| |||||||||||| ||||||| |||||||| |||| ||| ||||| ||
Sbjct: 387 ttttgcgtttatctcggtgcttcacatgtatgaaacctttggctggtggaggagagccga 446

                                                                       
Query: 279 caacatcaaagtgcactttgccgaaagcatgaatgagttccatcacctcttaatcatgga 338
             | || || ||||||||||| || |||  ||||||||||||||||||||||||||||||
Sbjct: 447 ttatataaaggtgcactttgctgagagctggaatgagttccatcacctcttaatcatgga 506

                                                     
Query: 339 agcgttgggtggcaactctgtatggattgatcgctttcttgc 380
           ||  ||||||||||||||| ||||| ||||||| ||||||||
Sbjct: 507 agaattgggtggcaactctttatgggttgatcgttttcttgc 548

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>gb|AF085174.3| Oryza sativa (japonica cultivar-group) oxidase (IM1) mRNA, complete
           cds; nuclear gene for plastid product
          Length = 1564

 Score =  178 bits (90), Expect = 9e-42
 Identities = 234/282 (82%)
 Strand = Plus / Plus

                                                                       
Query: 99  gctcgagcagtccttcaacgtattcctcacggacaccgtcatcctgatactcgatattct 158
           ||||||||||||| | ||| | |||||||||||  | ||||||  |||||| |||    |
Sbjct: 267 gctcgagcagtccgtgaacattttcctcacggagtcagtcatcacgatacttgatggatt 326

                                                                       
Query: 159 gtaccgcgaccgcgactacgccaggttcttcgtgctcgagaccatcgccagggtgcccta 218
           |||||| |||||| ||||||| || || |||||  | ||||| || || |||||||| ||
Sbjct: 327 gtaccgtgaccgcaactacgctagatttttcgtattggagacgattgctagggtgccgta 386

                                                                       
Query: 219 tttcgcgtttatatcggtgcttcacttgtatgagacctttggatggtcgagaagagctga 278
           ||| |||||||| |||||||||||| ||||||| |||||||| |||| ||| ||||| ||
Sbjct: 387 ttttgcgtttatctcggtgcttcacatgtatgaaacctttggctggtggaggagagccga 446

                                                                       
Query: 279 caacatcaaagtgcactttgccgaaagcatgaatgagttccatcacctcttaatcatgga 338
             | || || ||||||||||| || |||  ||||||||||||||||||||||||||||||
Sbjct: 447 ttatataaaggtgcactttgctgagagctggaatgagttccatcacctcttaatcatgga 506

                                                     
Query: 339 agcgttgggtggcaactctgtatggattgatcgctttcttgc 380
           ||  ||||||||||||||| ||||| ||||||| ||||||||
Sbjct: 507 agaattgggtggcaactctttatgggttgatcgttttcttgc 548

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>dbj|AK067891.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013124H21, full
           insert sequence
          Length = 1579

 Score =  178 bits (90), Expect = 9e-42
 Identities = 234/282 (82%)
 Strand = Plus / Plus

                                                                       
Query: 99  gctcgagcagtccttcaacgtattcctcacggacaccgtcatcctgatactcgatattct 158
           ||||||||||||| | ||| | |||||||||||  | ||||||  |||||| |||    |
Sbjct: 321 gctcgagcagtccgtgaacattttcctcacggagtcagtcatcacgatacttgatggatt 380

                                                                       
Query: 159 gtaccgcgaccgcgactacgccaggttcttcgtgctcgagaccatcgccagggtgcccta 218
           |||||| |||||| ||||||| || || |||||  | ||||| || || |||||||| ||
Sbjct: 381 gtaccgtgaccgcaactacgctagatttttcgtattggagacgattgctagggtgccgta 440

                                                                       
Query: 219 tttcgcgtttatatcggtgcttcacttgtatgagacctttggatggtcgagaagagctga 278
           ||| |||||||| |||||||||||| ||||||| |||||||| |||| ||| ||||| ||
Sbjct: 441 ttttgcgtttatctcggtgcttcacatgtatgaaacctttggctggtggaggagagccga 500

                                                                       
Query: 279 caacatcaaagtgcactttgccgaaagcatgaatgagttccatcacctcttaatcatgga 338
             | || || ||||||||||| || |||  ||||||||||||||||||||||||||||||
Sbjct: 501 ttatataaaggtgcactttgctgagagctggaatgagttccatcacctcttaatcatgga 560

                                                     
Query: 339 agcgttgggtggcaactctgtatggattgatcgctttcttgc 380
           ||  ||||||||||||||| ||||| ||||||| ||||||||
Sbjct: 561 agaattgggtggcaactctttatgggttgatcgttttcttgc 602

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>ref|NM_185204.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 504

 Score =  137 bits (69), Expect = 3e-29
 Identities = 171/205 (83%)
 Strand = Plus / Plus

                                                                       
Query: 158 tgtaccgcgaccgcgactacgccaggttcttcgtgctcgagaccatcgccagggtgccct 217
           ||||||| |||||| ||||||| || || |||||  | ||||| || || |||||||| |
Sbjct: 299 tgtaccgtgaccgcaactacgctagatttttcgtcttggagacgattgctagggtgccgt 358

                                                                       
Query: 218 atttcgcgtttatatcggtgcttcacttgtatgagacctttggatggtcgagaagagctg 277
           |||| |||||||| ||  |||||||| ||||||| || ||||| |||| ||| |||||||
Sbjct: 359 attttgcgtttatctctatgcttcacatgtatgaaacatttggctggtggaggagagctg 418

                                                                       
Query: 278 acaacatcaaagtgcactttgccgaaagcatgaatgagttccatcacctcttaatcatgg 337
           |  | || || ||||||||||| || |||  |||||||||||||||||||||||||||||
Sbjct: 419 attatataaaggtgcactttgctgagagctggaatgagttccatcacctcttaatcatgg 478

                                    
Query: 338 aagcgttgggtggcaactctgtatg 362
           |||  ||||||||||||||| ||||
Sbjct: 479 aagaattgggtggcaactctttatg 503

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>emb|AL606619.3|OSJN00032 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0043A12,
             complete sequence
          Length = 190432

 Score =  107 bits (54), Expect = 3e-20
 Identities = 102/118 (86%)
 Strand = Plus / Minus

                                                                         
Query: 223   gcgtttatatcggtgcttcacttgtatgagacctttggatggtcgagaagagctgacaac 282
             |||||||| |||||||||||| ||||||| |||||||| |||| ||| ||||| ||  | 
Sbjct: 70370 gcgtttatctcggtgcttcacatgtatgaaacctttggctggtggaggagagccgattat 70311

                                                                       
Query: 283   atcaaagtgcactttgccgaaagcatgaatgagttccatcacctcttaatcatggaag 340
             || || ||||||||||| || |||  ||||||||||||||||||||||||||||||||
Sbjct: 70310 ataaaggtgcactttgctgagagctggaatgagttccatcacctcttaatcatggaag 70253



 Score = 52.0 bits (26), Expect = 0.001
 Identities = 35/38 (92%)
 Strand = Plus / Minus

                                                   
Query: 343   ttgggtggcaactctgtatggattgatcgctttcttgc 380
             ||||||||||||||| ||||| ||||||| ||||||||
Sbjct: 70018 ttgggtggcaactctttatgggttgatcgttttcttgc 69981

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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score =  107 bits (54), Expect = 3e-20
 Identities = 102/118 (86%)
 Strand = Plus / Minus

                                                                            
Query: 223      gcgtttatatcggtgcttcacttgtatgagacctttggatggtcgagaagagctgacaac 282
                |||||||| |||||||||||| ||||||| |||||||| |||| ||| ||||| ||  | 
Sbjct: 34158988 gcgtttatctcggtgcttcacatgtatgaaacctttggctggtggaggagagccgattat 34158929

                                                                          
Query: 283      atcaaagtgcactttgccgaaagcatgaatgagttccatcacctcttaatcatggaag 340
                || || ||||||||||| || |||  ||||||||||||||||||||||||||||||||
Sbjct: 34158928 ataaaggtgcactttgctgagagctggaatgagttccatcacctcttaatcatggaag 34158871



 Score = 52.0 bits (26), Expect = 0.001
 Identities = 35/38 (92%)
 Strand = Plus / Minus

                                                      
Query: 343      ttgggtggcaactctgtatggattgatcgctttcttgc 380
                ||||||||||||||| ||||| ||||||| ||||||||
Sbjct: 34158636 ttgggtggcaactctttatgggttgatcgttttcttgc 34158599

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>emb|AL732340.3| Oryza sativa genomic DNA, chromosome 4, BAC clone: B0811B10, complete
             sequence
          Length = 99356

 Score =  107 bits (54), Expect = 3e-20
 Identities = 102/118 (86%)
 Strand = Plus / Minus

                                                                         
Query: 223   gcgtttatatcggtgcttcacttgtatgagacctttggatggtcgagaagagctgacaac 282
             |||||||| |||||||||||| ||||||| |||||||| |||| ||| ||||| ||  | 
Sbjct: 75281 gcgtttatctcggtgcttcacatgtatgaaacctttggctggtggaggagagccgattat 75222

                                                                       
Query: 283   atcaaagtgcactttgccgaaagcatgaatgagttccatcacctcttaatcatggaag 340
             || || ||||||||||| || |||  ||||||||||||||||||||||||||||||||
Sbjct: 75221 ataaaggtgcactttgctgagagctggaatgagttccatcacctcttaatcatggaag 75164



 Score = 52.0 bits (26), Expect = 0.001
 Identities = 35/38 (92%)
 Strand = Plus / Minus

                                                   
Query: 343   ttgggtggcaactctgtatggattgatcgctttcttgc 380
             ||||||||||||||| ||||| ||||||| ||||||||
Sbjct: 74929 ttgggtggcaactctttatgggttgatcgttttcttgc 74892

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>emb|AL732346.2| Oryza sativa genomic DNA, chromosome 4, BAC clone: H0818H01, complete
            sequence
          Length = 101125

 Score =  107 bits (54), Expect = 3e-20
 Identities = 102/118 (86%)
 Strand = Plus / Minus

                                                                        
Query: 223  gcgtttatatcggtgcttcacttgtatgagacctttggatggtcgagaagagctgacaac 282
            |||||||| |||||||||||| ||||||| |||||||| |||| ||| ||||| ||  | 
Sbjct: 9651 gcgtttatctcggtgcttcacatgtatgaaacctttggctggtggaggagagccgattat 9592

                                                                      
Query: 283  atcaaagtgcactttgccgaaagcatgaatgagttccatcacctcttaatcatggaag 340
            || || ||||||||||| || |||  ||||||||||||||||||||||||||||||||
Sbjct: 9591 ataaaggtgcactttgctgagagctggaatgagttccatcacctcttaatcatggaag 9534



 Score = 52.0 bits (26), Expect = 0.001
 Identities = 35/38 (92%)
 Strand = Plus / Minus

                                                  
Query: 343  ttgggtggcaactctgtatggattgatcgctttcttgc 380
            ||||||||||||||| ||||| ||||||| ||||||||
Sbjct: 9299 ttgggtggcaactctttatgggttgatcgttttcttgc 9262

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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 91.7 bits (46), Expect = 2e-15
 Identities = 100/118 (84%)
 Strand = Plus / Plus

                                                                            
Query: 223      gcgtttatatcggtgcttcacttgtatgagacctttggatggtcgagaagagctgacaac 282
                |||||||| ||  |||||||| ||||||| || ||||| |||| ||| ||||||||  | 
Sbjct: 35322780 gcgtttatctctatgcttcacatgtatgaaacatttggctggtggaggagagctgattat 35322839

                                                                          
Query: 283      atcaaagtgcactttgccgaaagcatgaatgagttccatcacctcttaatcatggaag 340
                || || ||||||||||| || |||  ||||||||||||||||||||||||||||||||
Sbjct: 35322840 ataaaggtgcactttgctgagagctggaatgagttccatcacctcttaatcatggaag 35322897



 Score = 44.1 bits (22), Expect = 0.33
 Identities = 34/38 (89%)
 Strand = Plus / Plus

                                                      
Query: 343      ttgggtggcaactctgtatggattgatcgctttcttgc 380
                ||||||||||||||| ||||  ||||||| ||||||||
Sbjct: 35323134 ttgggtggcaactctttatgagttgatcgttttcttgc 35323171

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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 91.7 bits (46), Expect = 2e-15
 Identities = 100/118 (84%)
 Strand = Plus / Plus

                                                                            
Query: 223      gcgtttatatcggtgcttcacttgtatgagacctttggatggtcgagaagagctgacaac 282
                |||||||| ||  |||||||| ||||||| || ||||| |||| ||| ||||||||  | 
Sbjct: 35412852 gcgtttatctctatgcttcacatgtatgaaacatttggctggtggaggagagctgattat 35412911

                                                                          
Query: 283      atcaaagtgcactttgccgaaagcatgaatgagttccatcacctcttaatcatggaag 340
                || || ||||||||||| || |||  ||||||||||||||||||||||||||||||||
Sbjct: 35412912 ataaaggtgcactttgctgagagctggaatgagttccatcacctcttaatcatggaag 35412969



 Score = 44.1 bits (22), Expect = 0.33
 Identities = 34/38 (89%)
 Strand = Plus / Plus

                                                      
Query: 343      ttgggtggcaactctgtatggattgatcgctttcttgc 380
                ||||||||||||||| ||||  ||||||| ||||||||
Sbjct: 35413206 ttgggtggcaactctttatgagttgatcgttttcttgc 35413243

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>gb|AC099324.5| Oryza sativa chromosome 3 BAC OSJNBb0043P23 genomic sequence, complete
             sequence
          Length = 116443

 Score = 91.7 bits (46), Expect = 2e-15
 Identities = 100/118 (84%)
 Strand = Plus / Minus

                                                                         
Query: 223   gcgtttatatcggtgcttcacttgtatgagacctttggatggtcgagaagagctgacaac 282
             |||||||| ||  |||||||| ||||||| || ||||| |||| ||| ||||||||  | 
Sbjct: 45674 gcgtttatctctatgcttcacatgtatgaaacatttggctggtggaggagagctgattat 45615

                                                                       
Query: 283   atcaaagtgcactttgccgaaagcatgaatgagttccatcacctcttaatcatggaag 340
             || || ||||||||||| || |||  ||||||||||||||||||||||||||||||||
Sbjct: 45614 ataaaggtgcactttgctgagagctggaatgagttccatcacctcttaatcatggaag 45557



 Score = 44.1 bits (22), Expect = 0.33
 Identities = 34/38 (89%)
 Strand = Plus / Minus

                                                   
Query: 343   ttgggtggcaactctgtatggattgatcgctttcttgc 380
             ||||||||||||||| ||||  ||||||| ||||||||
Sbjct: 45320 ttgggtggcaactctttatgagttgatcgttttcttgc 45283

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>dbj|AK073859.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033073L16, full
           insert sequence
          Length = 3094

 Score = 91.7 bits (46), Expect = 2e-15
 Identities = 100/118 (84%)
 Strand = Plus / Plus

                                                                       
Query: 223 gcgtttatatcggtgcttcacttgtatgagacctttggatggtcgagaagagctgacaac 282
           |||||||| ||  |||||||| ||||||| || ||||| |||| ||| ||||||||  | 
Sbjct: 834 gcgtttatctctatgcttcacatgtatgaaacatttggctggtggaggagagctgattat 893

                                                                     
Query: 283 atcaaagtgcactttgccgaaagcatgaatgagttccatcacctcttaatcatggaag 340
           || || ||||||||||| || |||  ||||||||||||||||||||||||||||||||
Sbjct: 894 ataaaggtgcactttgctgagagctggaatgagttccatcacctcttaatcatggaag 951



 Score = 44.1 bits (22), Expect = 0.33
 Identities = 34/38 (89%)
 Strand = Plus / Plus

                                                  
Query: 343  ttgggtggcaactctgtatggattgatcgctttcttgc 380
            ||||||||||||||| ||||  ||||||| ||||||||
Sbjct: 1189 ttgggtggcaactctttatgagttgatcgttttcttgc 1226

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>gb|AF302931.1|AF302931 Lycopersicon esculentum plastid quinol oxidase mRNA, complete cds
          Length = 1463

 Score = 63.9 bits (32), Expect = 4e-07
 Identities = 89/108 (82%)
 Strand = Plus / Plus

                                                                       
Query: 208 agggtgccctatttcgcgtttatatcggtgcttcacttgtatgagacctttggatggtcg 267
           ||||| || ||||| || ||||||||||| |||||| ||||||||| |||||| |||| |
Sbjct: 527 agggttccttattttgcatttatatcggttcttcacatgtatgagagctttggctggtgg 586

                                                           
Query: 268 agaagagctgacaacatcaaagtgcactttgccgaaagcatgaatgag 315
           ||||| || ||  | || |||||||| ||||| ||||||  |||||||
Sbjct: 587 agaagggcagattatatgaaagtgcattttgctgaaagctggaatgag 634

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>gb|AF177980.1|AF177980 Lycopersicon esculentum plastid terminal oxidase (PTOX) mRNA,
           complete cds; nuclear gene encoding plastid protein
          Length = 1273

 Score = 63.9 bits (32), Expect = 4e-07
 Identities = 89/108 (82%)
 Strand = Plus / Plus

                                                                       
Query: 208 agggtgccctatttcgcgtttatatcggtgcttcacttgtatgagacctttggatggtcg 267
           ||||| || ||||| || ||||||||||| |||||| ||||||||| |||||| |||| |
Sbjct: 557 agggttccttattttgcatttatatcggttcttcacatgtatgagagctttggctggtgg 616

                                                           
Query: 268 agaagagctgacaacatcaaagtgcactttgccgaaagcatgaatgag 315
           ||||| || ||  | || |||||||| ||||| ||||||  |||||||
Sbjct: 617 agaagggcagattatatgaaagtgcattttgctgaaagctggaatgag 664

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>gb|AF302932.1|AF302932 Lycopersicon esculentum plastid quinol oxidase gene, complete cds
          Length = 5019

 Score = 60.0 bits (30), Expect = 6e-06
 Identities = 75/90 (83%)
 Strand = Plus / Plus

                                                                        
Query: 226  tttatatcggtgcttcacttgtatgagacctttggatggtcgagaagagctgacaacatc 285
            ||||||||||| |||||| ||||||||| |||||| |||| |||||| || ||  | || 
Sbjct: 2469 tttatatcggttcttcacatgtatgagagctttggctggtggagaagggcagattatatg 2528

                                          
Query: 286  aaagtgcactttgccgaaagcatgaatgag 315
            |||||||| ||||| ||||||  |||||||
Sbjct: 2529 aaagtgcattttgctgaaagctggaatgag 2558

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>gb|AF177979.1|AF177979 Lycopersicon esculentum plastid terminal oxidase (PTOX) gene,
            complete cds; nuclear gene encoding plastid protein
          Length = 4766

 Score = 60.0 bits (30), Expect = 6e-06
 Identities = 75/90 (83%)
 Strand = Plus / Plus

                                                                        
Query: 226  tttatatcggtgcttcacttgtatgagacctttggatggtcgagaagagctgacaacatc 285
            ||||||||||| |||||| ||||||||| |||||| |||| |||||| || ||  | || 
Sbjct: 2436 tttatatcggttcttcacatgtatgagagctttggctggtggagaagggcagattatatg 2495

                                          
Query: 286  aaagtgcactttgccgaaagcatgaatgag 315
            |||||||| ||||| ||||||  |||||||
Sbjct: 2496 aaagtgcattttgctgaaagctggaatgag 2525

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>ref|NM_118352.2| Arabidopsis thaliana IM (IMMUTANS) AT4G22260 (IM) mRNA, complete
           cds
          Length = 1431

 Score = 54.0 bits (27), Expect = 3e-04
 Identities = 78/95 (82%)
 Strand = Plus / Plus

                                                                       
Query: 181 aggttcttcgtgctcgagaccatcgccagggtgccctatttcgcgtttatatcggtgctt 240
           |||||||| || || ||||| || || || ||||| ||||| |||||||| || ||||| 
Sbjct: 555 aggttctttgttcttgagacaattgctagagtgccttattttgcgtttatgtctgtgcta 614

                                              
Query: 241 cacttgtatgagacctttggatggtcgagaagagc 275
           ||  |||||||||||||||| |||| ||| |||||
Sbjct: 615 catatgtatgagacctttggttggtggaggagagc 649

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>gb|BT000558.1| Arabidopsis thaliana unknown protein  (At4g22260/T10I14_90) mRNA,
           complete cds
          Length = 1056

 Score = 54.0 bits (27), Expect = 3e-04
 Identities = 78/95 (82%)
 Strand = Plus / Plus

                                                                       
Query: 181 aggttcttcgtgctcgagaccatcgccagggtgccctatttcgcgtttatatcggtgctt 240
           |||||||| || || ||||| || || || ||||| ||||| |||||||| || ||||| 
Sbjct: 391 aggttctttgttcttgagacaattgctagagtgccttattttgcgtttatgtctgtgcta 450

                                              
Query: 241 cacttgtatgagacctttggatggtcgagaagagc 275
           ||  |||||||||||||||| |||| ||| |||||
Sbjct: 451 catatgtatgagacctttggttggtggaggagagc 485

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>gb|AF339717.1| Arabidopsis thaliana unknown protein (At4g22260) mRNA, complete cds
          Length = 1105

 Score = 54.0 bits (27), Expect = 3e-04
 Identities = 78/95 (82%)
 Strand = Plus / Plus

                                                                       
Query: 181 aggttcttcgtgctcgagaccatcgccagggtgccctatttcgcgtttatatcggtgctt 240
           |||||||| || || ||||| || || || ||||| ||||| |||||||| || ||||| 
Sbjct: 391 aggttctttgttcttgagacaattgctagagtgccttattttgcgtttatgtctgtgcta 450

                                              
Query: 241 cacttgtatgagacctttggatggtcgagaagagc 275
           ||  |||||||||||||||| |||| ||| |||||
Sbjct: 451 catatgtatgagacctttggttggtggaggagagc 485

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>gb|AF326898.1| Arabidopsis thaliana unknown protein (At4g22260) mRNA, complete cds
          Length = 1393

 Score = 54.0 bits (27), Expect = 3e-04
 Identities = 78/95 (82%)
 Strand = Plus / Plus

                                                                       
Query: 181 aggttcttcgtgctcgagaccatcgccagggtgccctatttcgcgtttatatcggtgctt 240
           |||||||| || || ||||| || || || ||||| ||||| |||||||| || ||||| 
Sbjct: 502 aggttctttgttcttgagacaattgctagagtgccttattttgcgtttatgtctgtgcta 561

                                              
Query: 241 cacttgtatgagacctttggatggtcgagaagagc 275
           ||  |||||||||||||||| |||| ||| |||||
Sbjct: 562 catatgtatgagacctttggttggtggaggagagc 596

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>gb|AY045699.1| Arabidopsis thaliana AT4g22260/T10I14_90 mRNA, complete cds
          Length = 1377

 Score = 54.0 bits (27), Expect = 3e-04
 Identities = 78/95 (82%)
 Strand = Plus / Plus

                                                                       
Query: 181 aggttcttcgtgctcgagaccatcgccagggtgccctatttcgcgtttatatcggtgctt 240
           |||||||| || || ||||| || || || ||||| ||||| |||||||| || ||||| 
Sbjct: 502 aggttctttgttcttgagacaattgctagagtgccttattttgcgtttatgtctgtgcta 561

                                              
Query: 241 cacttgtatgagacctttggatggtcgagaagagc 275
           ||  |||||||||||||||| |||| ||| |||||
Sbjct: 562 catatgtatgagacctttggttggtggaggagagc 596

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>gb|AF324663.2|AF324663 Arabidopsis thaliana AT4g22260 (AT4g22260/T10I14_90) mRNA, complete
           cds
          Length = 1377

 Score = 54.0 bits (27), Expect = 3e-04
 Identities = 78/95 (82%)
 Strand = Plus / Plus

                                                                       
Query: 181 aggttcttcgtgctcgagaccatcgccagggtgccctatttcgcgtttatatcggtgctt 240
           |||||||| || || ||||| || || || ||||| ||||| |||||||| || ||||| 
Sbjct: 502 aggttctttgttcttgagacaattgctagagtgccttattttgcgtttatgtctgtgcta 561

                                              
Query: 241 cacttgtatgagacctttggatggtcgagaagagc 275
           ||  |||||||||||||||| |||| ||| |||||
Sbjct: 562 catatgtatgagacctttggttggtggaggagagc 596

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>emb|AJ004881.1|ATJ004881 Arabidopsis thaliana mRNA for Immutans protein
          Length = 1396

 Score = 54.0 bits (27), Expect = 3e-04
 Identities = 78/95 (82%)
 Strand = Plus / Plus

                                                                       
Query: 181 aggttcttcgtgctcgagaccatcgccagggtgccctatttcgcgtttatatcggtgctt 240
           |||||||| || || ||||| || || || ||||| ||||| |||||||| || ||||| 
Sbjct: 520 aggttctttgttcttgagacaattgctagagtgccttattttgcgtttatgtctgtgcta 579

                                              
Query: 241 cacttgtatgagacctttggatggtcgagaagagc 275
           ||  |||||||||||||||| |||| ||| |||||
Sbjct: 580 catatgtatgagacctttggttggtggaggagagc 614

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>gb|AF098072.1|AF098072 Arabidopsis thaliana IMMUTANS (IM) mRNA, nuclear gene encoding
           chloroplast protein, complete cds
          Length = 1448

 Score = 54.0 bits (27), Expect = 3e-04
 Identities = 78/95 (82%)
 Strand = Plus / Plus

                                                                       
Query: 181 aggttcttcgtgctcgagaccatcgccagggtgccctatttcgcgtttatatcggtgctt 240
           |||||||| || || ||||| || || || ||||| ||||| |||||||| || ||||| 
Sbjct: 555 aggttctttgttcttgagacaattgctagagtgccttattttgcgtttatgtctgtgcta 614

                                              
Query: 241 cacttgtatgagacctttggatggtcgagaagagc 275
           ||  |||||||||||||||| |||| ||| |||||
Sbjct: 615 catatgtatgagacctttggttggtggaggagagc 649

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>gb|AF177981.1|AF177981 Capsicum annuum plastid terminal oxidase (PTOX) mRNA, complete cds;
           nuclear gene encoding plastid protein
          Length = 1387

 Score = 46.1 bits (23), Expect = 0.083
 Identities = 50/59 (84%)
 Strand = Plus / Plus

                                                                      
Query: 217 tatttcgcgtttatatcggtgcttcacttgtatgagacctttggatggtcgagaagagc 275
           ||||| || |||||||| || ||||||||||| |||| |||||| |||| |||| ||||
Sbjct: 459 tattttgcatttatatctgttcttcacttgtacgagagctttggttggtggagacgagc 517

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>gb|CP000249.1| Frankia sp. CcI3, complete genome
          Length = 5433628

 Score = 44.1 bits (22), Expect = 0.33
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                     
Query: 75      cgaggacggcgactgggtcgtc 96
               ||||||||||||||||||||||
Sbjct: 1622041 cgaggacggcgactgggtcgtc 1622020

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>emb|AL161557.2|ATCHRIV57 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 57
          Length = 199577

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 45/53 (84%)
 Strand = Plus / Minus

                                                                 
Query: 223  gcgtttatatcggtgcttcacttgtatgagacctttggatggtcgagaagagc 275
            |||||||| || ||||| ||  |||||||||||||||| |||| ||| |||||
Sbjct: 7979 gcgtttatgtctgtgctacatatgtatgagacctttggttggtggaggagagc 7927

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>emb|AL021712.2|ATT10I14 Arabidopsis thaliana DNA chromosome 4, BAC clone T10I14 (ESSA project)
          Length = 82891

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 45/53 (84%)
 Strand = Plus / Minus

                                                                  
Query: 223   gcgtttatatcggtgcttcacttgtatgagacctttggatggtcgagaagagc 275
             |||||||| || ||||| ||  |||||||||||||||| |||| ||| |||||
Sbjct: 41884 gcgtttatgtctgtgctacatatgtatgagacctttggttggtggaggagagc 41832

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>gb|CP000267.1| Rhodoferax ferrireducens DSM 15236, complete genome
          Length = 4712337

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 66      cctcgccggcgaggacggcga 86
               |||||||||||||||||||||
Sbjct: 4579961 cctcgccggcgaggacggcga 4579941

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>ref|XM_714123.1| Candida albicans SC5314 putative H+-pantothenate symporter
           (CaO19_12981), mRNA
          Length = 1458

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 294 ctttgccgaaagcatgaatg 313
           ||||||||||||||||||||
Sbjct: 994 ctttgccgaaagcatgaatg 975

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>ref|XM_714006.1| Candida albicans SC5314 putative H+-pantothenate symporter
           (CaO19_5535), mRNA
          Length = 1458

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 294 ctttgccgaaagcatgaatg 313
           ||||||||||||||||||||
Sbjct: 994 ctttgccgaaagcatgaatg 975

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>gb|CP000058.1| Pseudomonas syringae pv. phaseolicola 1448A, complete genome
          Length = 5928787

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 132     caccgtcatcctgatactcg 151
               ||||||||||||||||||||
Sbjct: 3958530 caccgtcatcctgatactcg 3958549

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>gb|AC107715.5| Mus musculus chromosome 10, clone RP24-376I19, complete sequence
          Length = 156153

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 237   gcttcacttgtatgagacct 256
             ||||||||||||||||||||
Sbjct: 14063 gcttcacttgtatgagacct 14082

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>emb|AJ973133.1| Andrographis paniculata partial ggps gene for putative
          geranylgerannylpyrophosphate synthase, exons 1-2, locus
          2
          Length = 686

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                              
Query: 68 tcgccggcgaggacggcgac 87
          ||||||||||||||||||||
Sbjct: 66 tcgccggcgaggacggcgac 47

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>gb|AC132807.3| Homo sapiens chromosome 3 clone RP11-147G2, complete sequence
          Length = 171678

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 201    catcgccagggtgccctatt 220
              ||||||||||||||||||||
Sbjct: 123594 catcgccagggtgccctatt 123575

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>gb|AC158602.6| Mus musculus 10 BAC RP23-136G23 (Roswell Park Cancer Institute (C57BL/6J
              Female) Mouse BAC Library) complete sequence
          Length = 182817

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 237    gcttcacttgtatgagacct 256
              ||||||||||||||||||||
Sbjct: 116472 gcttcacttgtatgagacct 116491

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>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
                sequence
          Length = 22696651

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 295      tttgccgaaagcatgaatga 314
                ||||||||||||||||||||
Sbjct: 11175892 tttgccgaaagcatgaatga 11175911



 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 295      tttgccgaaagcatgaatga 314
                ||||||||||||||||||||
Sbjct: 11099017 tttgccgaaagcatgaatga 11099036

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>gb|AC137672.2| Homo sapiens chromosome 3 clone RP11-72I12, complete sequence
          Length = 150313

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 201   catcgccagggtgccctatt 220
             ||||||||||||||||||||
Sbjct: 18395 catcgccagggtgccctatt 18376

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>dbj|AP005689.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
             clone:OSJNBa0042H24
          Length = 186313

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 295   tttgccgaaagcatgaatga 314
             ||||||||||||||||||||
Sbjct: 11064 tttgccgaaagcatgaatga 11083

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>dbj|AP005685.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
              clone:OSJNBa0004P20
          Length = 160410

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 295    tttgccgaaagcatgaatga 314
              ||||||||||||||||||||
Sbjct: 134699 tttgccgaaagcatgaatga 134718



 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 295   tttgccgaaagcatgaatga 314
             ||||||||||||||||||||
Sbjct: 57824 tttgccgaaagcatgaatga 57843

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>dbj|AB049083.1| Youngia japonica YjGGPPs1 mRNA for putative GGPP synthase 1,
          partial cds
          Length = 379

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                              
Query: 68 tcgccggcgaggacggcgac 87
          ||||||||||||||||||||
Sbjct: 75 tcgccggcgaggacggcgac 56

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>dbj|AB046107.1| Sonchus oleraceus SoGGPPS mRNA for putative GGPP synthase,
          partial cds
          Length = 380

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                              
Query: 68 tcgccggcgaggacggcgac 87
          ||||||||||||||||||||
Sbjct: 74 tcgccggcgaggacggcgac 55


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,131,669
Number of Sequences: 3902068
Number of extensions: 2131669
Number of successful extensions: 38901
Number of sequences better than 10.0: 43
Number of HSP's better than 10.0 without gapping: 43
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 38652
Number of HSP's gapped (non-prelim): 246
length of query: 384
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 362
effective length of database: 17,147,199,772
effective search space: 6207286317464
effective search space used: 6207286317464
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result