>CLPX_MOUSE (Q9JHS4) ATP-dependent Clp protease ATP-binding subunit ClpX-like,|
           mitochondrial precursor
          Length = 634

 Score = 29.3 bits (64), Expect = 3.9
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = -2

Query: 248 KCGTKCRYNISMVKRRRSTRFLACDTCDHIF 156
           KCG  C +  + V    STRF+ C+ C H F
Sbjct: 108 KCGDLCTHVETFVS---STRFVKCEKCHHFF 135

>CLPX_HUMAN (O76031) ATP-dependent Clp protease ATP-binding subunit ClpX-like,|
           mitochondrial precursor
          Length = 633

 Score = 29.3 bits (64), Expect = 3.9
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = -2

Query: 248 KCGTKCRYNISMVKRRRSTRFLACDTCDHIF 156
           KCG  C +  + V    STRF+ C+ C H F
Sbjct: 107 KCGDLCTHVETFVS---STRFVKCEKCHHFF 134

>MTL5_HUMAN (Q9Y4I5) Tesmin (Metallothionein-like 5, testis-specific)|
           (Testis-specific metallothionein-like protein)
          Length = 299

 Score = 28.9 bits (63), Expect = 5.1
 Identities = 17/49 (34%), Positives = 22/49 (44%), Gaps = 1/49 (2%)
 Frame = -1

Query: 417 FCNNCKCIHFLTTWNHSFNNRSISLHYDQNRFRH-NDYFGRDPTTSQKR 274
           FCNNC C           NN   +LH+D  RF+      GR+P   Q +
Sbjct: 107 FCNNCNC-----------NNCCNNLHHDIERFKAIKACLGRNPEAFQPK 144

>POLN_BFV (P87515) Nonstructural polyprotein (Polyprotein nsP1234) (P1234)|
            [Contains: P123; P123'; mRNA capping enzyme nsP1 (EC
            2.1.1.-) (EC 2.7.7.-) (Nonstructural protein 1);
            Protease/triphosphatase/NTPase/helicase nsP2 (EC
            3.4.22.-) (EC 3.1.3.33) (EC 3
          Length = 2410

 Score = 28.9 bits (63), Expect = 5.1
 Identities = 16/41 (39%), Positives = 22/41 (53%)
 Frame = -3

Query: 181  PVTPATTSFSSTGVVAFFSVSQESNIGLTTAGRNRPNPAIR 59
            P T +  S   +  ++ FSVS +S+IG    G  RP PA R
Sbjct: 1659 PSTISCNSSEDSRSLSTFSVSSDSSIGSLPVGDTRPIPAPR 1699

>FLGH_VIBCH (Q9KQ13) Flagellar L-ring protein precursor (Basal body L-ring|
           protein)
          Length = 258

 Score = 28.9 bits (63), Expect = 5.1
 Identities = 17/38 (44%), Positives = 20/38 (52%)
 Frame = -3

Query: 181 PVTPATTSFSSTGVVAFFSVSQESNIGLTTAGRNRPNP 68
           P+  A T   +T V A      ESN GLT A RNR +P
Sbjct: 22  PIESAETIQGTTTVDAVEGDKSESNSGLTDALRNRTDP 59

>DPO3_STAEQ (Q5HPS7) DNA polymerase III polC-type (EC 2.7.7.7) (PolIII)|
          Length = 1438

 Score = 28.1 bits (61), Expect = 8.8
 Identities = 24/104 (23%), Positives = 38/104 (36%), Gaps = 1/104 (0%)
 Frame = +3

Query: 6   WTGSXIFVVKEPVVAASCLIAGFG-LFLPAVVRPMLDSWETEKNATTPVELKDVVAGVTG 182
           W G  IFV          +  G+  L        ++D+ E  +   T  E          
Sbjct: 497 WVGDAIFVAHNASFDMGFIDTGYERLGFGPSTNGVIDTLELSRTINT--EYGKHGLNFLA 554

Query: 183 KKTG*STSLHHADVISTFCSALVFVAQTRGLSSGM*SDLGQNNH 314
           KK G   + HH  +  T  +A +F+   + +      +LG NNH
Sbjct: 555 KKYGVELTQHHRAIYDTEATAYIFIKMVQQM-----KELGVNNH 593

>NCLN_RAT (Q5XIA1) Nicalin precursor (Nicastrin-like protein)|
          Length = 563

 Score = 28.1 bits (61), Expect = 8.8
 Identities = 14/23 (60%), Positives = 17/23 (73%)
 Frame = +3

Query: 30 VKEPVVAASCLIAGFGLFLPAVV 98
          V E V+ ASCL  GF +FLPAV+
Sbjct: 8  VLENVLKASCLPLGFIVFLPAVL 30

>NCLN_MOUSE (Q8VCM8) Nicalin precursor (Nicastrin-like protein)|
          Length = 563

 Score = 28.1 bits (61), Expect = 8.8
 Identities = 14/23 (60%), Positives = 17/23 (73%)
 Frame = +3

Query: 30 VKEPVVAASCLIAGFGLFLPAVV 98
          V E V+ ASCL  GF +FLPAV+
Sbjct: 8  VLENVLKASCLPLGFIVFLPAVL 30

>POL2_DROME (P20825) Retrovirus-related Pol polyprotein from transposon 297|
           [Includes: Protease (EC 3.4.23.-); Reverse transcriptase
           (EC 2.7.7.49); Endonuclease]
          Length = 1059

 Score = 28.1 bits (61), Expect = 8.8
 Identities = 15/56 (26%), Positives = 25/56 (44%)
 Frame = -1

Query: 411 NNCKCIHFLTTWNHSFNNRSISLHYDQNRFRHNDYFGRDPTTSQKRALLSGQQKQV 244
           +N   IH      + F  + I +  D+N+  H+  FG   TT Q   +   + KQ+
Sbjct: 641 DNSNLIHLTEKPINYFKKQIIFIKSDKNKVEHSKIFGNSITTIQYDVMTLEKAKQI 696

>DPO3_STAES (Q8CPG6) DNA polymerase III polC-type (EC 2.7.7.7) (PolIII)|
          Length = 1442

 Score = 28.1 bits (61), Expect = 8.8
 Identities = 24/104 (23%), Positives = 38/104 (36%), Gaps = 1/104 (0%)
 Frame = +3

Query: 6   WTGSXIFVVKEPVVAASCLIAGFG-LFLPAVVRPMLDSWETEKNATTPVELKDVVAGVTG 182
           W G  IFV          +  G+  L        ++D+ E  +   T  E          
Sbjct: 501 WVGDAIFVAHNASFDMGFIDTGYERLGFGPSTNGVIDTLELSRTINT--EYGKHGLNFLA 558

Query: 183 KKTG*STSLHHADVISTFCSALVFVAQTRGLSSGM*SDLGQNNH 314
           KK G   + HH  +  T  +A +F+   + +      +LG NNH
Sbjct: 559 KKYGVELTQHHRAIYDTEATAYIFIKMVQQM-----KELGVNNH 597

>SPRL_STAS1 (Q49Z17) Protein sprT-like|
          Length = 152

 Score = 28.1 bits (61), Expect = 8.8
 Identities = 15/40 (37%), Positives = 21/40 (52%)
 Frame = -1

Query: 354 SISLHYDQNRFRHNDYFGRDPTTSQKRALLSGQQKQVRNK 235
           +ISL Y +  F+H  YF +   T+  R LLS    +V  K
Sbjct: 15  TISLKYFKMPFKHKAYFNKRLRTTGGRYLLSSHNIEVNEK 54


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 56,385,650
Number of Sequences: 219361
Number of extensions: 1106874
Number of successful extensions: 2964
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 2914
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2964
length of database: 80,573,946
effective HSP length: 101
effective length of database: 58,418,485
effective search space used: 2278320915
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)