Clone Information

BLAST Search Result

Clone Name	baak4f18
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	dbj\|AK120879.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	149	9e-33
2	gb\|AY106130.1\| Zea mays PCO086414 mRNA sequence	111	2e-21
3	gb\|AY108820.1\| Zea mays PCO118748 mRNA sequence	103	5e-19
4	ref\|NM_191642.1\| Oryza sativa (japonica cultivar-group), predic...	100	7e-18
5	dbj\|AK063120.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	100	7e-18
6	gb\|AC104713.3\| Oryza sativa (japonica cultivar-group) chromosome...	80	7e-12
7	dbj\|AP008211.1\| Oryza sativa (japonica cultivar-group) genomic D...	80	7e-12
8	ref\|XM_475818.1\| Oryza sativa (japonica cultivar-group), predic...	78	3e-11
9	dbj\|AP008207.1\| Oryza sativa (japonica cultivar-group) genomic D...	64	4e-07
10	dbj\|AP003381.3\| Oryza sativa (japonica cultivar-group) genomic D...	64	4e-07
11	dbj\|AP003023.2\| Oryza sativa (japonica cultivar-group) genomic D...	64	4e-07
12	ref\|NM_002843.2\| Homo sapiens protein tyrosine phosphatase, rece...	42	1.4
13	gb\|BC063417.1\| Homo sapiens protein tyrosine phosphatase, recept...	42	1.4
14	gb\|AC023232.16\| Homo sapiens chromosome 11, clone RP11-793I11, c...	42	1.4
15	gb\|AC011474.6\| Homo sapiens chromosome 19 clone CTC-525D6, compl...	42	1.4
16	gb\|AE005926.1\| Caulobacter crescentus CB15 section 252 of 359 of...	42	1.4
17	gb\|AC103828.2\| Homo sapiens chromosome 11, clone CTD1-2183M20, c...	42	1.4
18	gb\|M91448.1\|CCRFLGICHL Caulobacter crescentus DskA (dskA) gene, ...	42	1.4
19	dbj\|D37781.1\|HUMPTPS Homo sapiens HPTPeta mRNA for protein-tyros...	42	1.4
20	emb\|AL359057.1\|IR1845189 Homo sapiens mRNA full length insert cD...	42	1.4
21	gb\|U10886.1\|HSU10886 Human density enhanced phosphatase-1 mRNA, ...	42	1.4
22	gb\|AC119220.11\| Mus musculus chromosome 1, clone RP24-201K16, co...	40	5.7
23	gb\|CP000099.1\| Methanosarcina barkeri str. fusaro chromosome 1, ...	40	5.7
24	gb\|AC138382.10\| Mus musculus chromosome 1, clone RP24-400E14, co...	40	5.7
25	gb\|AE017283.1\| Propionibacterium acnes KPA171202, complete genome	40	5.7
26	gb\|AC158556.9\| Mus musculus chromosome 15, clone RP23-140F20, co...	40	5.7
27	gb\|AC114819.4\| Mus musculus BAC clone RP23-52J20 from chromosome...	40	5.7
28	emb\|AL589962.3\| Human DNA sequence from clone RP11-233K4 on chro...	40	5.7
29	emb\|AL391476.20\| Human DNA sequence from clone RP11-229A19 on ch...	40	5.7
30	emb\|Y13764.1\|MSFHMII Methanosarcina barkeri fha a, e, g, b genes...	40	5.7
31	emb\|CR293530.22\| Zebrafish DNA sequence from clone CH211-129C13 ...	40	5.7
32	emb\|BX901883.5\| Zebrafish DNA sequence from clone DKEY-151M15 in...	40	5.7
33	gb\|AC009383.8\| Drosophila melanogaster 3L BAC RP98-31C3 (Roswell...	40	5.7
34	dbj\|AK048870.1\| Mus musculus 0 day neonate cerebellum cDNA, RIKE...	40	5.7
35	gb\|AC098485.6\| Homo sapiens BAC clone CTD-2053I13 from 2, comple...	40	5.7
36	emb\|AL935324.8\| Zebrafish DNA sequence from clone CH211-197B6 in...	40	5.7
37	dbj\|AK130762.1\| Homo sapiens cDNA FLJ27252 fis, clone SYN09233, ...	40	5.7
38	gb\|AE003514.4\| Drosophila melanogaster chromosome 3L, section 71...	40	5.7
39	emb\|CT025615.4\| Zebrafish DNA sequence from clone CH211-66G21 in...	40	5.7
40	emb\|CR933002.7\| Zebrafish DNA sequence from clone DKEY-246A18 in...	40	5.7
41	gb\|AC133516.3\| Mus musculus BAC clone RP23-260G15 from chromosom...	40	5.7
42	gb\|AC091981.4\| Homo sapiens chromosome 5 clone RP11-549L3, compl...	40	5.7

>dbj|AK120879.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023027J05, full
           insert sequence
          Length = 504

 Score =  149 bits (75), Expect = 9e-33
 Identities = 112/123 (91%), Gaps = 1/123 (0%)
 Strand = Plus / Plus

                                                                       
Query: 2   gtgatggacaggctcaagnatcttcgtcgtcaaggagcccgtcgtcgccgcctcctgcct 61
           |||||||| | ||||||| |||||||  || ||||||||||||||| |||||||||||||
Sbjct: 99  gtgatggagaagctcaag-atcttcgcggtgaaggagcccgtcgtcaccgcctcctgcct 157

                                                                       
Query: 62  aatcgccggattcggtctatttcttccagcagttgttaggccaatgttggattcttggga 121
            ||||||||||||||||| ||||||||||||||||| || ||||||||||||||||||||
Sbjct: 158 catcgccggattcggtctttttcttccagcagttgtcagaccaatgttggattcttggga 217

              
Query: 122 gac 124
           |||
Sbjct: 218 gac 220

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>gb|AY106130.1| Zea mays PCO086414 mRNA sequence
          Length = 605

 Score =  111 bits (56), Expect = 2e-21
 Identities = 108/124 (87%), Gaps = 1/124 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   cgtgatggacaggctcaagnatcttcgtcgtcaaggagcccgtcgtcgccgcctcctgcc 60
           ||||||||| | ||||||| ||||| ||||| ||||||||||| ||||| ||||||||||
Sbjct: 178 cgtgatggagaagctcaag-atctttgtcgttaaggagcccgtagtcgcggcctcctgcc 236

                                                                       
Query: 61  taatcgccggattcggtctatttcttccagcagttgttaggccaatgttggattcttggg 120
           | ||||| ||||||||||| |||||||||||||||||  |||||||  ||||||| ||| 
Sbjct: 237 tcatcgctggattcggtctctttcttccagcagttgtccggccaatcctggattcatggc 296

               
Query: 121 agac 124
           ||||
Sbjct: 297 agac 300



 Score = 50.1 bits (25), Expect = 0.006
 Identities = 34/37 (91%)
 Strand = Plus / Plus

                                                
Query: 153 ctaaaagatgtggtcgcaggtgtcacaggcaagaaaa 189
           ||||| |||||||| ||||||||||| ||||||||||
Sbjct: 326 ctaaatgatgtggttgcaggtgtcaccggcaagaaaa 362

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>gb|AY108820.1| Zea mays PCO118748 mRNA sequence
          Length = 595

 Score =  103 bits (52), Expect = 5e-19
 Identities = 107/124 (86%), Gaps = 1/124 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   cgtgatggacaggctcaagnatcttcgtcgtcaaggagcccgtcgtcgccgcctcctgcc 60
           ||||||||| | ||||||| |||||||| || |||||||| || ||||| || ||||| |
Sbjct: 114 cgtgatggagaagctcaag-atcttcgttgtgaaggagcctgttgtcgcagcttcctgtc 172

                                                                       
Query: 61  taatcgccggattcggtctatttcttccagcagttgttaggccaatgttggattcttggg 120
           | ||||||||||||||||| |||||||||||||||||  |||||||  ||||||| ||||
Sbjct: 173 tcatcgccggattcggtctctttcttccagcagttgtccggccaatcctggattcatggg 232

               
Query: 121 agac 124
           ||||
Sbjct: 233 agac 236

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>ref|NM_191642.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 162

 Score = 99.6 bits (50), Expect = 7e-18
 Identities = 65/70 (92%)
 Strand = Plus / Plus

                                                                       
Query: 34  aggagcccgtcgtcgccgcctcctgcctaatcgccggattcggtctatttcttccagcag 93
           ||||||| |||||||||||||||||||| |||||||| |||||||| ||||||||||| |
Sbjct: 38  aggagccggtcgtcgccgcctcctgcctcatcgccggcttcggtctttttcttccagctg 97

                     
Query: 94  ttgttaggcc 103
           ||||||||||
Sbjct: 98  ttgttaggcc 107

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>dbj|AK063120.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-111-E06, full
           insert sequence
          Length = 520

 Score = 99.6 bits (50), Expect = 7e-18
 Identities = 65/70 (92%)
 Strand = Plus / Plus

                                                                       
Query: 34  aggagcccgtcgtcgccgcctcctgcctaatcgccggattcggtctatttcttccagcag 93
           ||||||| |||||||||||||||||||| |||||||| |||||||| ||||||||||| |
Sbjct: 85  aggagccggtcgtcgccgcctcctgcctcatcgccggcttcggtctttttcttccagctg 144

                     
Query: 94  ttgttaggcc 103
           ||||||||||
Sbjct: 145 ttgttaggcc 154

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>gb|AC104713.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1362_G11,
             complete sequence
          Length = 115808

 Score = 79.8 bits (40), Expect = 7e-12
 Identities = 68/76 (89%), Gaps = 1/76 (1%)
 Strand = Plus / Minus

                                                                         
Query: 2     gtgatggacaggctcaagnatcttcgtcgtcaaggagcccgtcgtcgccgcctcctgcct 61
             |||||||| | ||||||| |||||||  || ||||||||||||||| |||||||||||||
Sbjct: 85014 gtgatggagaagctcaag-atcttcgcggtgaaggagcccgtcgtcaccgcctcctgcct 84956

                             
Query: 62    aatcgccggattcggt 77
              |||||||||||||||
Sbjct: 84955 catcgccggattcggt 84940



 Score = 75.8 bits (38), Expect = 1e-10
 Identities = 47/50 (94%)
 Strand = Plus / Minus

                                                               
Query: 75    ggtctatttcttccagcagttgttaggccaatgttggattcttgggagac 124
             ||||| ||||||||||||||||| || |||||||||||||||||||||||
Sbjct: 83045 ggtctttttcttccagcagttgtcagaccaatgttggattcttgggagac 82996

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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score = 79.8 bits (40), Expect = 7e-12
 Identities = 68/76 (89%), Gaps = 1/76 (1%)
 Strand = Plus / Minus

                                                                            
Query: 2        gtgatggacaggctcaagnatcttcgtcgtcaaggagcccgtcgtcgccgcctcctgcct 61
                |||||||| | ||||||| |||||||  || ||||||||||||||| |||||||||||||
Sbjct: 26704017 gtgatggagaagctcaag-atcttcgcggtgaaggagcccgtcgtcaccgcctcctgcct 26703959

                                
Query: 62       aatcgccggattcggt 77
                 |||||||||||||||
Sbjct: 26703958 catcgccggattcggt 26703943



 Score = 75.8 bits (38), Expect = 1e-10
 Identities = 47/50 (94%)
 Strand = Plus / Minus

                                                                  
Query: 75       ggtctatttcttccagcagttgttaggccaatgttggattcttgggagac 124
                ||||| ||||||||||||||||| || |||||||||||||||||||||||
Sbjct: 26702048 ggtctttttcttccagcagttgtcagaccaatgttggattcttgggagac 26701999

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>ref|XM_475818.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 282

 Score = 77.8 bits (39), Expect = 3e-11
 Identities = 67/75 (89%), Gaps = 1/75 (1%)
 Strand = Plus / Plus

                                                                      
Query: 2  gtgatggacaggctcaagnatcttcgtcgtcaaggagcccgtcgtcgccgcctcctgcct 61
          |||||||| | ||||||| |||||||  || ||||||||||||||| |||||||||||||
Sbjct: 7  gtgatggagaagctcaag-atcttcgcggtgaaggagcccgtcgtcaccgcctcctgcct 65

                         
Query: 62 aatcgccggattcgg 76
           ||||||||||||||
Sbjct: 66 catcgccggattcgg 80



 Score = 73.8 bits (37), Expect = 4e-10
 Identities = 46/49 (93%)
 Strand = Plus / Plus

                                                            
Query: 76  gtctatttcttccagcagttgttaggccaatgttggattcttgggagac 124
           |||| ||||||||||||||||| || |||||||||||||||||||||||
Sbjct: 164 gtctttttcttccagcagttgtcagaccaatgttggattcttgggagac 212

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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 63.9 bits (32), Expect = 4e-07
 Identities = 41/44 (93%)
 Strand = Plus / Plus

                                                            
Query: 34       aggagcccgtcgtcgccgcctcctgcctaatcgccggattcggt 77
                ||||||| |||||||||||||||||||| |||||||| ||||||
Sbjct: 29240363 aggagccggtcgtcgccgcctcctgcctcatcgccggcttcggt 29240406



 Score = 42.1 bits (21), Expect = 1.4
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                             
Query: 75       ggtctatttcttccagcagttgttaggcc 103
                ||||| ||||||||||| |||||||||||
Sbjct: 29242187 ggtctttttcttccagctgttgttaggcc 29242215

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>dbj|AP003381.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0692C11
          Length = 169562

 Score = 63.9 bits (32), Expect = 4e-07
 Identities = 41/44 (93%)
 Strand = Plus / Plus

                                                         
Query: 34    aggagcccgtcgtcgccgcctcctgcctaatcgccggattcggt 77
             ||||||| |||||||||||||||||||| |||||||| ||||||
Sbjct: 19226 aggagccggtcgtcgccgcctcctgcctcatcgccggcttcggt 19269



 Score = 42.1 bits (21), Expect = 1.4
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                          
Query: 75    ggtctatttcttccagcagttgttaggcc 103
             ||||| ||||||||||| |||||||||||
Sbjct: 21050 ggtctttttcttccagctgttgttaggcc 21078

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>dbj|AP003023.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0684B02
          Length = 132470

 Score = 63.9 bits (32), Expect = 4e-07
 Identities = 41/44 (93%)
 Strand = Plus / Plus

                                                         
Query: 34    aggagcccgtcgtcgccgcctcctgcctaatcgccggattcggt 77
             ||||||| |||||||||||||||||||| |||||||| ||||||
Sbjct: 86150 aggagccggtcgtcgccgcctcctgcctcatcgccggcttcggt 86193



 Score = 42.1 bits (21), Expect = 1.4
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                          
Query: 75    ggtctatttcttccagcagttgttaggcc 103
             ||||| ||||||||||| |||||||||||
Sbjct: 87974 ggtctttttcttccagctgttgttaggcc 88002

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>ref|NM_002843.2| Homo sapiens protein tyrosine phosphatase, receptor type, J
           (PTPRJ), mRNA
          Length = 5119

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 40  ccgtcgtcgccgcctcctgcc 60
           |||||||||||||||||||||
Sbjct: 283 ccgtcgtcgccgcctcctgcc 263

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>gb|BC063417.1| Homo sapiens protein tyrosine phosphatase, receptor type, J, mRNA
          (cDNA clone IMAGE:5222068), complete cds
          Length = 1870

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                               
Query: 40 ccgtcgtcgccgcctcctgcc 60
          |||||||||||||||||||||
Sbjct: 43 ccgtcgtcgccgcctcctgcc 23

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>gb|AC023232.16| Homo sapiens chromosome 11, clone RP11-793I11, complete sequence
          Length = 188868

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 40    ccgtcgtcgccgcctcctgcc 60
             |||||||||||||||||||||
Sbjct: 55303 ccgtcgtcgccgcctcctgcc 55323

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>gb|AC011474.6| Homo sapiens chromosome 19 clone CTC-525D6, complete sequence
          Length = 194718

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 112    attcttgggagactgagaaaa 132
              |||||||||||||||||||||
Sbjct: 139484 attcttgggagactgagaaaa 139504

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>gb|AE005926.1| Caulobacter crescentus CB15 section 252 of 359 of the complete genome
          Length = 10961

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 45   gtcgccgcctcctgcctaatcgccg 69
            ||||||||||||||||| |||||||
Sbjct: 7155 gtcgccgcctcctgcctgatcgccg 7179

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>gb|AC103828.2| Homo sapiens chromosome 11, clone CTD1-2183M20, complete sequence
          Length = 136372

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 40     ccgtcgtcgccgcctcctgcc 60
              |||||||||||||||||||||
Sbjct: 111047 ccgtcgtcgccgcctcctgcc 111067

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>gb|M91448.1|CCRFLGICHL Caulobacter crescentus DskA (dskA) gene, partial cds; FliX (fliX),
            flagellin (flgI), and chemotactic response protein (cheL)
            genes, complete cds; and flagellar assembly-associated
            protein (flbY) gene, partial cds
          Length = 2746

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 45   gtcgccgcctcctgcctaatcgccg 69
            ||||||||||||||||| |||||||
Sbjct: 1144 gtcgccgcctcctgcctgatcgccg 1168

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>dbj|D37781.1|HUMPTPS Homo sapiens HPTPeta mRNA for protein-tyrosine phosphatase,
           complete cds
          Length = 4756

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 40  ccgtcgtcgccgcctcctgcc 60
           |||||||||||||||||||||
Sbjct: 276 ccgtcgtcgccgcctcctgcc 256

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>emb|AL359057.1|IR1845189 Homo sapiens mRNA full length insert cDNA clone EUROIMAGE 1845189
          Length = 1455

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 40  ccgtcgtcgccgcctcctgcc 60
           |||||||||||||||||||||
Sbjct: 111 ccgtcgtcgccgcctcctgcc 91

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>gb|U10886.1|HSU10886 Human density enhanced phosphatase-1 mRNA, complete cds
          Length = 5117

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 40  ccgtcgtcgccgcctcctgcc 60
           |||||||||||||||||||||
Sbjct: 281 ccgtcgtcgccgcctcctgcc 261

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>gb|AC119220.11| Mus musculus chromosome 1, clone RP24-201K16, complete sequence
          Length = 162827

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 264   acaagagggctctcttctgg 283
             ||||||||||||||||||||
Sbjct: 10451 acaagagggctctcttctgg 10432

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>gb|CP000099.1| Methanosarcina barkeri str. fusaro chromosome 1, complete sequence
          Length = 4837408

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 184     agaaaacgggttgatctacgtctc 207
               ||||||||||||||||| ||||||
Sbjct: 2898627 agaaaacgggttgatcttcgtctc 2898604

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>gb|AC138382.10| Mus musculus chromosome 1, clone RP24-400E14, complete sequence
          Length = 136819

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 264   acaagagggctctcttctgg 283
             ||||||||||||||||||||
Sbjct: 25631 acaagagggctctcttctgg 25650

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>gb|AE017283.1| Propionibacterium acnes KPA171202, complete genome
          Length = 2560265

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 25     tcgtcgtcaaggagcccgtc 44
              ||||||||||||||||||||
Sbjct: 137354 tcgtcgtcaaggagcccgtc 137373

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>gb|AC158556.9| Mus musculus chromosome 15, clone RP23-140F20, complete sequence
          Length = 203053

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 336   catagtgcaatgagatggac 355
             ||||||||||||||||||||
Sbjct: 61468 catagtgcaatgagatggac 61449

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>gb|AC114819.4| Mus musculus BAC clone RP23-52J20 from chromosome 8, complete sequence
          Length = 204239

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 385   aagaaagtgaatgcatttgcagtt 408
             ||||||||||||| ||||||||||
Sbjct: 49477 aagaaagtgaatgtatttgcagtt 49500

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>emb|AL589962.3| Human DNA sequence from clone RP11-233K4 on chromosome 6 Contains
            part of the IRF4 gene for interferon regulatory factor 4,
            complete sequence
          Length = 6994

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                        
Query: 333  gatcatagtgcaatgagatggacctgtt 360
            |||||||||||||||| ||||| |||||
Sbjct: 1080 gatcatagtgcaatgaaatggaactgtt 1053

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>emb|AL391476.20| Human DNA sequence from clone RP11-229A19 on chromosome 1 Contains the 3'
              end of the TTF2 gene for RNA polymerase II transcription
              termination factor, the TRIM45 gene for tripartite
              motif-containing 45, a ribosomal protein S15a (RPS15A)
              pseudogene, the gene for immune costimulatory protein B7-H4
              and a CpG island, complete sequence
          Length = 171595

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 268    gagggctctcttctgggatg 287
              ||||||||||||||||||||
Sbjct: 161848 gagggctctcttctgggatg 161829

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>emb|Y13764.1|MSFHMII Methanosarcina barkeri fha a, e, g, b genes, isoenzyme I
          Length = 4121

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 184 agaaaacgggttgatctacgtctc 207
           ||||||||||||||||| ||||||
Sbjct: 704 agaaaacgggttgatcttcgtctc 681

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>emb|CR293530.22| Zebrafish DNA sequence from clone CH211-129C13 in linkage group 1,
             complete sequence
          Length = 179015

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 168   gcaggtgtcacaggcaagaa 187
             ||||||||||||||||||||
Sbjct: 62247 gcaggtgtcacaggcaagaa 62266

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>emb|BX901883.5| Zebrafish DNA sequence from clone DKEY-151M15 in linkage group 3,
             complete sequence
          Length = 241961

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 209   tcaccatgctgatgttatat 228
             ||||||||||||||||||||
Sbjct: 59509 tcaccatgctgatgttatat 59528

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>gb|AC009383.8| Drosophila melanogaster 3L BAC RP98-31C3 (Roswell Park Cancer Institute
             Drosophila BAC Library) complete sequence
          Length = 179283

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 392   tgaatgcatttgcagttgtt 411
             ||||||||||||||||||||
Sbjct: 83961 tgaatgcatttgcagttgtt 83942

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>dbj|AK048870.1| Mus musculus 0 day neonate cerebellum cDNA, RIKEN full-length
            enriched library, clone:C230077O19
            product:unclassifiable, full insert sequence
          Length = 3185

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 336  catagtgcaatgagatggac 355
            ||||||||||||||||||||
Sbjct: 3053 catagtgcaatgagatggac 3072

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>gb|AC098485.6| Homo sapiens BAC clone CTD-2053I13 from 2, complete sequence
          Length = 88404

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 272   gctctcttctgggatgtagt 291
             ||||||||||||||||||||
Sbjct: 12631 gctctcttctgggatgtagt 12612

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>emb|AL935324.8| Zebrafish DNA sequence from clone CH211-197B6 in linkage group 10,
             complete sequence
          Length = 197730

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 376   ccaagttgtaagaaagtgaa 395
             ||||||||||||||||||||
Sbjct: 42460 ccaagttgtaagaaagtgaa 42441

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>dbj|AK130762.1| Homo sapiens cDNA FLJ27252 fis, clone SYN09233, highly similar to
            Interferon regulatory factor 4
          Length = 1976

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                        
Query: 333  gatcatagtgcaatgagatggacctgtt 360
            |||||||||||||||| ||||| |||||
Sbjct: 1403 gatcatagtgcaatgaaatggaactgtt 1376

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>gb|AE003514.4| Drosophila melanogaster chromosome 3L, section 71 of 83 of the complete
              sequence
          Length = 299903

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 392    tgaatgcatttgcagttgtt 411
              ||||||||||||||||||||
Sbjct: 126978 tgaatgcatttgcagttgtt 126959

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>emb|CT025615.4| Zebrafish DNA sequence from clone CH211-66G21 in linkage group 14,
             complete sequence
          Length = 27301

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 378   aagttgtaagaaagtgaatgcatt 401
             ||||||||| ||||||||||||||
Sbjct: 12071 aagttgtaataaagtgaatgcatt 12094

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>emb|CR933002.7| Zebrafish DNA sequence from clone DKEY-246A18 in linkage group 1,
             complete sequence
          Length = 31933

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 319   tctgaacctattttgatcat 338
             ||||||||||||||||||||
Sbjct: 22950 tctgaacctattttgatcat 22931

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>gb|AC133516.3| Mus musculus BAC clone RP23-260G15 from chromosome 10, complete sequence
          Length = 203750

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 77     tctatttcttccagcagttgttag 100
              ||||||||||| ||||||||||||
Sbjct: 117768 tctatttcttctagcagttgttag 117791

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>gb|AC091981.4| Homo sapiens chromosome 5 clone RP11-549L3, complete sequence
          Length = 187685

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 267   agagggctctcttctgggatgtag 290
             |||||||||||||||||| |||||
Sbjct: 18293 agagggctctcttctgggttgtag 18270


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,142,766
Number of Sequences: 3902068
Number of extensions: 4142766
Number of successful extensions: 85153
Number of sequences better than 10.0: 42
Number of HSP's better than 10.0 without gapping: 42
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 84999
Number of HSP's gapped (non-prelim): 154
length of query: 423
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 401
effective length of database: 17,147,199,772
effective search space: 6876027108572
effective search space used: 6876027108572
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result