ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | baak4f17 |
|---|---|
| Clone Library Name | barley_pub |
>RPE65_MOUSE (Q91ZQ5) Retinal pigment epithelium-specific 65 kDa protein| Length = 532 Score = 39.3 bits (90), Expect = 0.002 Identities = 18/53 (33%), Positives = 28/53 (52%) Frame = +3 Query: 6 DEDDGYVVCYVHDEGTGDNRFVVMDAQSPDLDIVAEVQLPSRVPYGFHGLFVR 164 +EDDG V+ V G G ++ + DL +A ++ + +P FHGLF R Sbjct: 479 EEDDGVVLSVVVSPGAGQKPAYLLVLNAKDLSEIARAEVETNIPVTFHGLFKR 531
>RPE65_RAT (O70276) Retinal pigment epithelium-specific 65 kDa protein| Length = 532 Score = 38.1 bits (87), Expect = 0.005 Identities = 17/51 (33%), Positives = 27/51 (52%) Frame = +3 Query: 6 DEDDGYVVCYVHDEGTGDNRFVVMDAQSPDLDIVAEVQLPSRVPYGFHGLF 158 +EDDG V+ V G G ++ + DL +A ++ + +P FHGLF Sbjct: 479 EEDDGVVLSVVVSPGAGQKPAYLLVLNAKDLSEIARAEVETNIPVTFHGLF 529
>RPE65_CHICK (Q9YGX2) Retinal pigment epithelium-specific 65 kDa protein| Length = 533 Score = 37.7 bits (86), Expect = 0.007 Identities = 18/53 (33%), Positives = 28/53 (52%) Frame = +3 Query: 6 DEDDGYVVCYVHDEGTGDNRFVVMDAQSPDLDIVAEVQLPSRVPYGFHGLFVR 164 +EDDG V+ V G+G ++ + D+ VA ++ +P FHGLF R Sbjct: 480 EEDDGVVLSIVISPGSGPKPAYLLILNAKDMSEVARAEVEVNIPVTFHGLFKR 532
>RPE65_HUMAN (Q16518) Retinal pigment epithelium-specific 65 kDa protein| Length = 532 Score = 37.4 bits (85), Expect = 0.009 Identities = 18/51 (35%), Positives = 26/51 (50%) Frame = +3 Query: 6 DEDDGYVVCYVHDEGTGDNRFVVMDAQSPDLDIVAEVQLPSRVPYGFHGLF 158 +EDDG V+ V G G ++ + DL VA ++ +P FHGLF Sbjct: 479 EEDDGVVLSVVVSPGAGQKPAYLLILNAKDLSEVARAEVEINIPVTFHGLF 529
>RPE65_CERAE (Q9XT71) Retinal pigment epithelium-specific 65 kDa protein| Length = 532 Score = 37.4 bits (85), Expect = 0.009 Identities = 18/51 (35%), Positives = 26/51 (50%) Frame = +3 Query: 6 DEDDGYVVCYVHDEGTGDNRFVVMDAQSPDLDIVAEVQLPSRVPYGFHGLF 158 +EDDG V+ V G G ++ + DL VA ++ +P FHGLF Sbjct: 479 EEDDGVVLSVVVSPGAGQKPAYLLILNAKDLSEVARAEVEINIPVTFHGLF 529
>RPE65_CANFA (Q9TVB8) Retinal pigment epithelium-specific 65 kDa protein| Length = 532 Score = 37.4 bits (85), Expect = 0.009 Identities = 18/51 (35%), Positives = 26/51 (50%) Frame = +3 Query: 6 DEDDGYVVCYVHDEGTGDNRFVVMDAQSPDLDIVAEVQLPSRVPYGFHGLF 158 +EDDG V+ V G G ++ + DL VA ++ +P FHGLF Sbjct: 479 EEDDGVVLSVVVSPGAGQKPAYLLILNAKDLSEVARAEVEINIPVTFHGLF 529
>RPE65_BOVIN (Q28175) Retinal pigment epithelium-specific 65 kDa protein| (Membrane receptor p63) Length = 532 Score = 37.4 bits (85), Expect = 0.009 Identities = 18/51 (35%), Positives = 26/51 (50%) Frame = +3 Query: 6 DEDDGYVVCYVHDEGTGDNRFVVMDAQSPDLDIVAEVQLPSRVPYGFHGLF 158 +EDDG V+ V G G ++ + DL VA ++ +P FHGLF Sbjct: 479 EEDDGVVLSVVVSPGAGQKPAYLLILNAKDLSEVARAEVEINIPVTFHGLF 529
>RPE65_AMBTI (Q9YI25) Retinal pigment epithelium-specific 65 kDa protein| Length = 532 Score = 37.4 bits (85), Expect = 0.009 Identities = 16/51 (31%), Positives = 27/51 (52%) Frame = +3 Query: 6 DEDDGYVVCYVHDEGTGDNRFVVMDAQSPDLDIVAEVQLPSRVPYGFHGLF 158 +EDDG V+ V G G ++ + D+ +A ++ S +P FHG+F Sbjct: 479 EEDDGVVLSVVISPGEGQKPAFLLILNAKDMSEIARAEVDSNIPVTFHGMF 529
>BCDO2_MOUSE (Q99NF1) Beta,beta-carotene 9',10'-dioxygenase (EC 1.14.99.-)| (Beta-carotene dioxygenase 2) (B-diox-II) Length = 532 Score = 35.4 bits (80), Expect = 0.034 Identities = 18/53 (33%), Positives = 31/53 (58%), Gaps = 1/53 (1%) Frame = +3 Query: 6 DEDDGYVVCYVHDEGTGDNRFV-VMDAQSPDLDIVAEVQLPSRVPYGFHGLFV 161 +ED G ++ V ++ F+ V+DA+S + ++P ++PYGFHG FV Sbjct: 480 EEDSGVILSVVITPNQSESNFLLVLDAKS--FTELGRAEVPVQMPYGFHGTFV 530
>BCDO2_MACFA (Q8HXG8) Beta,beta-carotene 9',10'-dioxygenase (EC 1.14.99.-)| (Beta-carotene dioxygenase 2) (B-diox-II) Length = 556 Score = 34.7 bits (78), Expect = 0.059 Identities = 16/53 (30%), Positives = 32/53 (60%), Gaps = 1/53 (1%) Frame = +3 Query: 6 DEDDGYVVCYVHDEGTGDNRFV-VMDAQSPDLDIVAEVQLPSRVPYGFHGLFV 161 +ED G ++ V ++ F+ V+DA++ + + ++P ++PYGFHG F+ Sbjct: 504 EEDGGVILSVVITPNQNESNFLLVLDAKN--FEELGRAEVPVQMPYGFHGTFI 554
>BCDO2_HUMAN (Q9BYV7) Beta,beta-carotene 9',10'-dioxygenase (EC 1.14.99.-)| (Beta-carotene dioxygenase 2) (B-diox-II) Length = 556 Score = 34.7 bits (78), Expect = 0.059 Identities = 16/53 (30%), Positives = 32/53 (60%), Gaps = 1/53 (1%) Frame = +3 Query: 6 DEDDGYVVCYVHDEGTGDNRFV-VMDAQSPDLDIVAEVQLPSRVPYGFHGLFV 161 +ED G ++ V ++ F+ V+DA++ + + ++P ++PYGFHG F+ Sbjct: 504 EEDGGVILSVVITPNQNESNFLLVLDAKN--FEELGRAEVPVQMPYGFHGTFI 554
>DKK2_HUMAN (Q9UBU2) Dickkopf-related protein 2 precursor (Dkk-2) (Dickkopf-2)| (hDkk-2) Length = 259 Score = 28.5 bits (62), Expect = 4.2 Identities = 15/39 (38%), Positives = 20/39 (51%) Frame = -2 Query: 175 SSACLTNRPWKP*GTRDGSCTSATMSRSGDCASITTNRL 59 SSAC+ R K RDG C +T +G C +T + L Sbjct: 97 SSACMVCRRKKKRCHRDGMCCPSTRCNNGICIPVTESIL 135
>ADAM1_RAT (P70505) ADAM 1 precursor (EC 3.4.24.-) (A disintegrin and| metalloproteinase domain 1) (Fertilin alpha subunit) Length = 789 Score = 28.1 bits (61), Expect = 5.5 Identities = 21/70 (30%), Positives = 31/70 (44%), Gaps = 5/70 (7%) Frame = -2 Query: 277 PIHGLPMHHSVDLLVLYIERAGVSE-SDDHWCC---DRSSACLTNRPW-KP*GTRDGSCT 113 P H MH ++ + +G S S DH+ D ACL +RPW + RD C Sbjct: 392 PKHLCLMHETIS------KTSGFSNCSSDHFLRFLHDHRGACLLDRPWHQSHKRRDAHCG 445 Query: 112 SATMSRSGDC 83 + + S +C Sbjct: 446 NGVVEESEEC 455
>DKK2_MOUSE (Q9QYZ8) Dickkopf-related protein 2 precursor (Dkk-2) (Dickkopf-2)| (mDkk-2) Length = 259 Score = 27.7 bits (60), Expect = 7.2 Identities = 15/39 (38%), Positives = 19/39 (48%) Frame = -2 Query: 175 SSACLTNRPWKP*GTRDGSCTSATMSRSGDCASITTNRL 59 SSAC+ R K RDG C T +G C +T + L Sbjct: 97 SSACMLCRRKKKRCHRDGMCCPGTRCNNGICIPVTESIL 135 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 43,978,329 Number of Sequences: 219361 Number of extensions: 800217 Number of successful extensions: 1999 Number of sequences better than 10.0: 14 Number of HSP's better than 10.0 without gapping: 1969 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1999 length of database: 80,573,946 effective HSP length: 97 effective length of database: 59,295,929 effective search space used: 1423102296 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
