ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name baak4f17
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AY838897.1| Oryza sativa (japonica cultivar-group) 9-cis-epox... 226 4e-56
2ref|XM_506928.1| PREDICTED Oryza sativa (japonica cultivar-group... 226 4e-56
3ref|XM_467354.1| Oryza sativa (japonica cultivar-group), mRNA 226 4e-56
4dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 226 4e-56
5dbj|AP005825.3| Oryza sativa (japonica cultivar-group) genomic D... 226 4e-56
6dbj|AK099580.1| Oryza sativa (japonica cultivar-group) cDNA clon... 226 4e-56
7dbj|AK064824.1| Oryza sativa (japonica cultivar-group) cDNA clon... 226 4e-56
8gb|AY838901.1| Oryza sativa (japonica cultivar-group) 9-cis-epox... 48 0.020
9gb|AY838900.1| Oryza sativa (japonica cultivar-group) 9-cis-epox... 48 0.020
10dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 48 0.020
11dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 48 0.020
12dbj|AP005632.3| Oryza sativa (japonica cultivar-group) genomic D... 48 0.020
13dbj|AK119780.1| Oryza sativa (japonica cultivar-group) cDNA clon... 48 0.020
14dbj|AK107649.1| Oryza sativa (japonica cultivar-group) cDNA clon... 48 0.020
15gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 48 0.020
16emb|AL731885.4|CNS08C8P Oryza sativa chromosome 12, . BAC OSJNBb... 48 0.020
17emb|AL845347.4|CNS08CB9 Oryza sativa chromosome 12, . BAC OSJNBb... 48 0.020
18gb|AY838899.1| Oryza sativa (japonica cultivar-group) 9-cis-epox... 46 0.079
19emb|AL713930.5|CNS07YP7 Oryza sativa chromosome 3, . BAC OSJNBa0... 46 0.079
20gb|DQ145930.1| Hordeum vulgare subsp. vulgare 9-cis-epoxycaroten... 46 0.079
21dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 46 0.079
22emb|BX842649.1| Bdellovibrio bacteriovorus complete genome, stra... 44 0.31
23emb|BX640443.1| Bordetella bronchiseptica strain RB50, complete ... 42 1.2
24emb|BX640430.1| Bordetella parapertussis strain 12822, complete ... 42 1.2
25emb|BX640419.1| Bordetella pertussis strain Tohama I, complete g... 42 1.2
26gb|AC151535.2| Mus musculus BAC clone RP23-213M8 from chromosome... 42 1.2
27gb|CP000230.1| Rhodospirillum rubrum ATCC 11170, complete genome 42 1.2
28dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome 42 1.2
29gb|AC151531.3| Mus musculus BAC clone RP24-387D22 from chromosom... 42 1.2
30dbj|D78198.1| Pimelobacter sp. DNA for trehalose synthase, compl... 42 1.2
31ref|XM_469957.1| Oryza sativa (japonica cultivar-group), mRNA 40 4.9
32ref|XM_478943.1| Oryza sativa (japonica cultivar-group), mRNA 40 4.9
33gb|AC120307.3| Oryza sativa (japonica cultivar-group) chromosome... 40 4.9
34gb|AC147054.4| Pan troglodytes BAC clone RP43-145A1 from 7, comp... 40 4.9
35ref|XM_366971.1| Magnaporthe grisea 70-15 chromosome VII hypothe... 40 4.9
36gb|AC090871.11| Oryza sativa chromosome 3 BAC OSJNBb0060J21 geno... 40 4.9
37gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 40 4.9
38gb|AC125047.5| Mus musculus BAC clone RP23-354G14 from chromosom... 40 4.9
39ref|XM_783011.1| PREDICTED: Strongylocentrotus purpuratus simila... 40 4.9
40gb|CP000089.1| Dechloromonas aromatica RCB, complete genome 40 4.9
41emb|CR555306.1| Azoarcus sp. EbN1 complete genome 40 4.9
42emb|AL731596.3|OSJN00236 Oryza sativa genomic DNA, chromosome 4,... 40 4.9
43dbj|AP007255.1| Magnetospirillum magneticum AMB-1 DNA, complete ... 40 4.9
44dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 40 4.9
45dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 40 4.9
46gb|AC009111.8| Homo sapiens chromosome 16 clone RP11-468D1, comp... 40 4.9
47gb|AC010546.10| Homo sapiens chromosome 16 clone RP11-50O21, com... 40 4.9
48gb|AC007009.2|AC007009 Homo sapiens BAC clone RP11-560C1 from 7p... 40 4.9
49gb|AY144442.1| Sorghum bicolor BAC 95A23/98N8.1 Rph region, part... 40 4.9
50dbj|AP005149.4| Oryza sativa (japonica cultivar-group) genomic D... 40 4.9
51dbj|BA000045.2| Gloeobacter violaceus PCC 7421 DNA, complete genome 40 4.9
52dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete ... 40 4.9
53dbj|AP004159.3| Oryza sativa (japonica cultivar-group) genomic D... 40 4.9
54dbj|AK067897.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 4.9
55dbj|AK067186.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 4.9
56emb|AL845314.10| Zebrafish DNA sequence from clone CH211-153N11 ... 40 4.9
57emb|BX000362.6| Zebrafish DNA sequence from clone DKEYP-93D12 in... 40 4.9
58gb|U95953.1|ZMU95953 Zea mays viviparous-14 (vp14) mRNA, complet... 40 4.9
59dbj|AP000857.4| Homo sapiens genomic DNA, chromosome 11q, clone:... 40 4.9
60gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 40 4.9
61gb|AC125214.4| Mus musculus BAC clone RP23-84H24 from chromosome... 40 4.9 
>gb|AY838897.1| Oryza sativa (japonica cultivar-group) 9-cis-epoxycarotenoid
            dioxygenase 1 (NCED1) mRNA, complete cds
          Length = 2119

 Score =  226 bits (114), Expect = 4e-56
 Identities = 174/194 (89%)
 Strand = Plus / Plus

                                                                        
Query: 2    cggcgacgaggacgacggctacgtggtgtgctacgtgcacgacgagggcaccggcgacaa 61
            |||| ||||||| ||||| ||| ||||||||||||| |||||||||| ||||||||| ||
Sbjct: 1825 cggcaacgaggatgacgggtacttggtgtgctacgtccacgacgaggccaccggcgagaa 1884

                                                                        
Query: 62   ccggttcgtggtgatggacgcacagtcgcccgacctggacatcgtcgccgaggtgcagct 121
            ||||||||||||||||||||| | |||||| |||||||| |||||||| |||||||||||
Sbjct: 1885 ccggttcgtggtgatggacgcgcggtcgccggacctggagatcgtcgcggaggtgcagct 1944

                                                                        
Query: 122  tccatcccgcgtcccctacggcttccacggcctgttcgtcaggcaggccgagctccggtc 181
             ||    |||||||||||||||||||| ||||||||||||| |||||||||||||| |||
Sbjct: 1945 gcccggacgcgtcccctacggcttccatggcctgttcgtcacgcaggccgagctccagtc 2004

                          
Query: 182  acagcaccaatgat 195
            ||||||||||||||
Sbjct: 2005 acagcaccaatgat 2018
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>ref|XM_506928.1| PREDICTED Oryza sativa (japonica cultivar-group), P0724B10.24 mRNA
          Length = 2079

 Score =  226 bits (114), Expect = 4e-56
 Identities = 174/194 (89%)
 Strand = Plus / Plus

                                                                        
Query: 2    cggcgacgaggacgacggctacgtggtgtgctacgtgcacgacgagggcaccggcgacaa 61
            |||| ||||||| ||||| ||| ||||||||||||| |||||||||| ||||||||| ||
Sbjct: 1743 cggcaacgaggatgacgggtacttggtgtgctacgtccacgacgaggccaccggcgagaa 1802

                                                                        
Query: 62   ccggttcgtggtgatggacgcacagtcgcccgacctggacatcgtcgccgaggtgcagct 121
            ||||||||||||||||||||| | |||||| |||||||| |||||||| |||||||||||
Sbjct: 1803 ccggttcgtggtgatggacgcgcggtcgccggacctggagatcgtcgcggaggtgcagct 1862

                                                                        
Query: 122  tccatcccgcgtcccctacggcttccacggcctgttcgtcaggcaggccgagctccggtc 181
             ||    |||||||||||||||||||| ||||||||||||| |||||||||||||| |||
Sbjct: 1863 gcccggacgcgtcccctacggcttccatggcctgttcgtcacgcaggccgagctccagtc 1922

                          
Query: 182  acagcaccaatgat 195
            ||||||||||||||
Sbjct: 1923 acagcaccaatgat 1936
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>ref|XM_467354.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2079

 Score =  226 bits (114), Expect = 4e-56
 Identities = 174/194 (89%)
 Strand = Plus / Plus

                                                                        
Query: 2    cggcgacgaggacgacggctacgtggtgtgctacgtgcacgacgagggcaccggcgacaa 61
            |||| ||||||| ||||| ||| ||||||||||||| |||||||||| ||||||||| ||
Sbjct: 1743 cggcaacgaggatgacgggtacttggtgtgctacgtccacgacgaggccaccggcgagaa 1802

                                                                        
Query: 62   ccggttcgtggtgatggacgcacagtcgcccgacctggacatcgtcgccgaggtgcagct 121
            ||||||||||||||||||||| | |||||| |||||||| |||||||| |||||||||||
Sbjct: 1803 ccggttcgtggtgatggacgcgcggtcgccggacctggagatcgtcgcggaggtgcagct 1862

                                                                        
Query: 122  tccatcccgcgtcccctacggcttccacggcctgttcgtcaggcaggccgagctccggtc 181
             ||    |||||||||||||||||||| ||||||||||||| |||||||||||||| |||
Sbjct: 1863 gcccggacgcgtcccctacggcttccatggcctgttcgtcacgcaggccgagctccagtc 1922

                          
Query: 182  acagcaccaatgat 195
            ||||||||||||||
Sbjct: 1923 acagcaccaatgat 1936
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score =  226 bits (114), Expect = 4e-56
 Identities = 174/194 (89%)
 Strand = Plus / Minus

                                                                            
Query: 2        cggcgacgaggacgacggctacgtggtgtgctacgtgcacgacgagggcaccggcgacaa 61
                |||| ||||||| ||||| ||| ||||||||||||| |||||||||| ||||||||| ||
Sbjct: 29044928 cggcaacgaggatgacgggtacttggtgtgctacgtccacgacgaggccaccggcgagaa 29044869

                                                                            
Query: 62       ccggttcgtggtgatggacgcacagtcgcccgacctggacatcgtcgccgaggtgcagct 121
                ||||||||||||||||||||| | |||||| |||||||| |||||||| |||||||||||
Sbjct: 29044868 ccggttcgtggtgatggacgcgcggtcgccggacctggagatcgtcgcggaggtgcagct 29044809

                                                                            
Query: 122      tccatcccgcgtcccctacggcttccacggcctgttcgtcaggcaggccgagctccggtc 181
                 ||    |||||||||||||||||||| ||||||||||||| |||||||||||||| |||
Sbjct: 29044808 gcccggacgcgtcccctacggcttccatggcctgttcgtcacgcaggccgagctccagtc 29044749

                              
Query: 182      acagcaccaatgat 195
                ||||||||||||||
Sbjct: 29044748 acagcaccaatgat 29044735



 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 5        cgacgaggacgacggctacg 24
                ||||||||||||||||||||
Sbjct: 32012068 cgacgaggacgacggctacg 32012087
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>dbj|AP005825.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
             clone:P0724B10
          Length = 169143

 Score =  226 bits (114), Expect = 4e-56
 Identities = 174/194 (89%)
 Strand = Plus / Minus

                                                                         
Query: 2     cggcgacgaggacgacggctacgtggtgtgctacgtgcacgacgagggcaccggcgacaa 61
             |||| ||||||| ||||| ||| ||||||||||||| |||||||||| ||||||||| ||
Sbjct: 91093 cggcaacgaggatgacgggtacttggtgtgctacgtccacgacgaggccaccggcgagaa 91034

                                                                         
Query: 62    ccggttcgtggtgatggacgcacagtcgcccgacctggacatcgtcgccgaggtgcagct 121
             ||||||||||||||||||||| | |||||| |||||||| |||||||| |||||||||||
Sbjct: 91033 ccggttcgtggtgatggacgcgcggtcgccggacctggagatcgtcgcggaggtgcagct 90974

                                                                         
Query: 122   tccatcccgcgtcccctacggcttccacggcctgttcgtcaggcaggccgagctccggtc 181
              ||    |||||||||||||||||||| ||||||||||||| |||||||||||||| |||
Sbjct: 90973 gcccggacgcgtcccctacggcttccatggcctgttcgtcacgcaggccgagctccagtc 90914

                           
Query: 182   acagcaccaatgat 195
             ||||||||||||||
Sbjct: 90913 acagcaccaatgat 90900
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>dbj|AK099580.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013040C20, full
            insert sequence
          Length = 2080

 Score =  226 bits (114), Expect = 4e-56
 Identities = 174/194 (89%)
 Strand = Plus / Plus

                                                                        
Query: 2    cggcgacgaggacgacggctacgtggtgtgctacgtgcacgacgagggcaccggcgacaa 61
            |||| ||||||| ||||| ||| ||||||||||||| |||||||||| ||||||||| ||
Sbjct: 1743 cggcaacgaggatgacgggtacttggtgtgctacgtccacgacgaggccaccggcgagaa 1802

                                                                        
Query: 62   ccggttcgtggtgatggacgcacagtcgcccgacctggacatcgtcgccgaggtgcagct 121
            ||||||||||||||||||||| | |||||| |||||||| |||||||| |||||||||||
Sbjct: 1803 ccggttcgtggtgatggacgcgcggtcgccggacctggagatcgtcgcggaggtgcagct 1862

                                                                        
Query: 122  tccatcccgcgtcccctacggcttccacggcctgttcgtcaggcaggccgagctccggtc 181
             ||    |||||||||||||||||||| ||||||||||||| |||||||||||||| |||
Sbjct: 1863 gcccggacgcgtcccctacggcttccatggcctgttcgtcacgcaggccgagctccagtc 1922

                          
Query: 182  acagcaccaatgat 195
            ||||||||||||||
Sbjct: 1923 acagcaccaatgat 1936
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>dbj|AK064824.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013000F03, full
            insert sequence
          Length = 2080

 Score =  226 bits (114), Expect = 4e-56
 Identities = 174/194 (89%)
 Strand = Plus / Plus

                                                                        
Query: 2    cggcgacgaggacgacggctacgtggtgtgctacgtgcacgacgagggcaccggcgacaa 61
            |||| ||||||| ||||| ||| ||||||||||||| |||||||||| ||||||||| ||
Sbjct: 1743 cggcaacgaggatgacgggtacttggtgtgctacgtccacgacgaggccaccggcgagaa 1802

                                                                        
Query: 62   ccggttcgtggtgatggacgcacagtcgcccgacctggacatcgtcgccgaggtgcagct 121
            ||||||||||||||||||||| | |||||| |||||||| |||||||| |||||||||||
Sbjct: 1803 ccggttcgtggtgatggacgcgcggtcgccggacctggagatcgtcgcggaggtgcagct 1862

                                                                        
Query: 122  tccatcccgcgtcccctacggcttccacggcctgttcgtcaggcaggccgagctccggtc 181
             ||    |||||||||||||||||||| ||||||||||||| |||||||||||||| |||
Sbjct: 1863 gcccggacgcgtcccctacggcttccatggcctgttcgtcacgcaggccgagctccagtc 1922

                          
Query: 182  acagcaccaatgat 195
            ||||||||||||||
Sbjct: 1923 acagcaccaatgat 1936
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>gb|AY838901.1| Oryza sativa (japonica cultivar-group) 9-cis-epoxycarotenoid
            dioxygenase 5 (NCED5) mRNA, complete cds
          Length = 2041

 Score = 48.1 bits (24), Expect = 0.020
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                    
Query: 129  cgcgtcccctacggcttccacggc 152
            ||||||||||||||||||||||||
Sbjct: 1878 cgcgtcccctacggcttccacggc 1901
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>gb|AY838900.1| Oryza sativa (japonica cultivar-group) 9-cis-epoxycarotenoid
            dioxygenase 4 (NCED4) mRNA, complete cds
          Length = 1949

 Score = 48.1 bits (24), Expect = 0.020
 Identities = 36/40 (90%)
 Strand = Plus / Plus

                                                    
Query: 9    gaggacgacggctacgtggtgtgctacgtgcacgacgagg 48
            |||||||||||| ||||| |||||| ||| ||||||||||
Sbjct: 1667 gaggacgacggccacgtgctgtgcttcgtccacgacgagg 1706
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>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
                sequence
          Length = 27566993

 Score = 48.1 bits (24), Expect = 0.020
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                        
Query: 129      cgcgtcccctacggcttccacggc 152
                ||||||||||||||||||||||||
Sbjct: 26303663 cgcgtcccctacggcttccacggc 26303686
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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
               sequence
          Length = 29644043

 Score = 48.1 bits (24), Expect = 0.020
 Identities = 36/40 (90%)
 Strand = Plus / Plus

                                                       
Query: 9       gaggacgacggctacgtggtgtgctacgtgcacgacgagg 48
               |||||||||||| ||||| |||||| ||| ||||||||||
Sbjct: 2904523 gaggacgacggccacgtgctgtgcttcgtccacgacgagg 2904562



 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 1        gcggcgacgaggacgacggc 20
                ||||||||||||||||||||
Sbjct: 23938140 gcggcgacgaggacgacggc 23938121
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>dbj|AP005632.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OSJNBb0050B07
          Length = 142134

 Score = 48.1 bits (24), Expect = 0.020
 Identities = 36/40 (90%)
 Strand = Plus / Plus

                                                     
Query: 9     gaggacgacggctacgtggtgtgctacgtgcacgacgagg 48
             |||||||||||| ||||| |||||| ||| ||||||||||
Sbjct: 74810 gaggacgacggccacgtgctgtgcttcgtccacgacgagg 74849
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>dbj|AK119780.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-173-D12, full
            insert sequence
          Length = 2144

 Score = 48.1 bits (24), Expect = 0.020
 Identities = 36/40 (90%)
 Strand = Plus / Plus

                                                    
Query: 9    gaggacgacggctacgtggtgtgctacgtgcacgacgagg 48
            |||||||||||| ||||| |||||| ||| ||||||||||
Sbjct: 1686 gaggacgacggccacgtgctgtgcttcgtccacgacgagg 1725
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>dbj|AK107649.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-131-F10, full
           insert sequence
          Length = 1475

 Score = 48.1 bits (24), Expect = 0.020
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                   
Query: 129 cgcgtcccctacggcttccacggc 152
           ||||||||||||||||||||||||
Sbjct: 790 cgcgtcccctacggcttccacggc 813
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>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 48.1 bits (24), Expect = 0.020
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                        
Query: 129      cgcgtcccctacggcttccacggc 152
                ||||||||||||||||||||||||
Sbjct: 26231839 cgcgtcccctacggcttccacggc 26231862
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>emb|AL731885.4|CNS08C8P Oryza sativa chromosome 12, . BAC OSJNBb0016A10 of library OSJNBb from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 133978

 Score = 48.1 bits (24), Expect = 0.020
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                     
Query: 129   cgcgtcccctacggcttccacggc 152
             ||||||||||||||||||||||||
Sbjct: 67647 cgcgtcccctacggcttccacggc 67670
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>emb|AL845347.4|CNS08CB9 Oryza sativa chromosome 12, . BAC OSJNBb0101I10 of library OSJNBb from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 131689

 Score = 48.1 bits (24), Expect = 0.020
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                     
Query: 129   cgcgtcccctacggcttccacggc 152
             ||||||||||||||||||||||||
Sbjct: 17942 cgcgtcccctacggcttccacggc 17965
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>gb|AY838899.1| Oryza sativa (japonica cultivar-group) 9-cis-epoxycarotenoid
            dioxygenase 3 (NCED3) mRNA, complete cds
          Length = 2060

 Score = 46.1 bits (23), Expect = 0.079
 Identities = 35/39 (89%)
 Strand = Plus / Plus

                                                   
Query: 114  gtgcagcttccatcccgcgtcccctacggcttccacggc 152
            |||||||| || |||||||| || |||||||||||||||
Sbjct: 1920 gtgcagctgccgtcccgcgtgccgtacggcttccacggc 1958
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>emb|AL713930.5|CNS07YP7 Oryza sativa chromosome 3, . BAC OSJNBa0007L18 of library OSJNBa from
              chromosome 3 of cultivar Nipponbare of ssp. japonica of
              Oryza sativa (rice), complete sequence
          Length = 183327

 Score = 46.1 bits (23), Expect = 0.079
 Identities = 35/39 (89%)
 Strand = Plus / Plus

                                                     
Query: 114    gtgcagcttccatcccgcgtcccctacggcttccacggc 152
              |||||||| || |||||||| || |||||||||||||||
Sbjct: 144721 gtgcagctgccgtcccgcgtgccgtacggcttccacggc 144759
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>gb|DQ145930.1| Hordeum vulgare subsp. vulgare 9-cis-epoxycarotenoid dioxygenase 1
            mRNA, complete cds
          Length = 2376

 Score = 46.1 bits (23), Expect = 0.079
 Identities = 35/39 (89%)
 Strand = Plus / Plus

                                                   
Query: 114  gtgcagcttccatcccgcgtcccctacggcttccacggc 152
            |||||||| || ||||| |||||||| ||||||||||||
Sbjct: 1735 gtgcagctgccgtcccgggtcccctatggcttccacggc 1773



 Score = 46.1 bits (23), Expect = 0.079
 Identities = 41/47 (87%)
 Strand = Plus / Plus

                                                           
Query: 2    cggcgacgaggacgacggctacgtggtgtgctacgtgcacgacgagg 48
            ||||| ||||||||||||||||||| | | || ||||| ||||||||
Sbjct: 1629 cggcgccgaggacgacggctacgtgctctccttcgtgcgcgacgagg 1675
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 46.1 bits (23), Expect = 0.079
 Identities = 35/39 (89%)
 Strand = Plus / Plus

                                                       
Query: 114      gtgcagcttccatcccgcgtcccctacggcttccacggc 152
                |||||||| || |||||||| || |||||||||||||||
Sbjct: 24766032 gtgcagctgccgtcccgcgtgccgtacggcttccacggc 24766070



 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 1        gcggcgacgaggacgacggc 20
                ||||||||||||||||||||
Sbjct: 32772416 gcggcgacgaggacgacggc 32772435
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>emb|BX842649.1| Bdellovibrio bacteriovorus complete genome, strain HD100; segment 4/11
          Length = 349697

 Score = 44.1 bits (22), Expect = 0.31
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                        
Query: 199    cagattcagatacaccagcacgttct 224
              ||||| ||||||||||||||||||||
Sbjct: 280513 cagatacagatacaccagcacgttct 280488
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>emb|BX640443.1| Bordetella bronchiseptica strain RB50, complete genome; segment 7/16
          Length = 346274

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 88    cgcccgacctggacatcgtcgccga 112
             |||||||||||||||||| ||||||
Sbjct: 48138 cgcccgacctggacatcgacgccga 48162
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>emb|BX640430.1| Bordetella parapertussis strain 12822, complete genome; segment 8/14
          Length = 348014

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 88     cgcccgacctggacatcgtcgccga 112
              |||||||||||||||||| ||||||
Sbjct: 312016 cgcccgacctggacatcgacgccga 312040
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>emb|BX640419.1| Bordetella pertussis strain Tohama I, complete genome; segment 9/12
          Length = 349672

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 88     cgcccgacctggacatcgtcgccga 112
              |||||||||||||||||| ||||||
Sbjct: 172229 cgcccgacctggacatcgacgccga 172205
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>gb|AC151535.2| Mus musculus BAC clone RP23-213M8 from chromosome 7, complete sequence
          Length = 216527

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 320   tagcatttacatgtttacaagaaag 344
             |||||||||||||||||||| ||||
Sbjct: 57418 tagcatttacatgtttacaataaag 57442
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>gb|CP000230.1| Rhodospirillum rubrum ATCC 11170, complete genome
          Length = 4352825

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 51      accggcgacaaccggttcgtg 71
               |||||||||||||||||||||
Sbjct: 1468883 accggcgacaaccggttcgtg 1468903
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>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome
          Length = 6021225

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                        
Query: 96      ctggacatcgtcgccgaggtgcagc 120
               |||||||| ||||||||||||||||
Sbjct: 3236682 ctggacatggtcgccgaggtgcagc 3236706



 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 1      gcggcgacgaggacgacggc 20
              ||||||||||||||||||||
Sbjct: 949318 gcggcgacgaggacgacggc 949299
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>gb|AC151531.3| Mus musculus BAC clone RP24-387D22 from chromosome 7, complete sequence
          Length = 213801

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 320    tagcatttacatgtttacaagaaag 344
              |||||||||||||||||||| ||||
Sbjct: 163709 tagcatttacatgtttacaataaag 163733
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>dbj|D78198.1| Pimelobacter sp. DNA for trehalose synthase, complete cds
          Length = 2304

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 35  cgtgcacgacgagggcaccggcgac 59
           |||||||||||||| ||||||||||
Sbjct: 228 cgtgcacgacgaggtcaccggcgac 252
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>ref|XM_469957.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1358

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 1   gcggcgacgaggacgacggc 20
           ||||||||||||||||||||
Sbjct: 322 gcggcgacgaggacgacggc 303
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>ref|XM_478943.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 926

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 1   gcggcgacgaggacgacggc 20
           ||||||||||||||||||||
Sbjct: 319 gcggcgacgaggacgacggc 300
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>gb|AC120307.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0074E19
              map R1938, complete sequence
          Length = 160847

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 1      gcggcgacgaggacgacggc 20
              ||||||||||||||||||||
Sbjct: 110164 gcggcgacgaggacgacggc 110145
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>gb|AC147054.4| Pan troglodytes BAC clone RP43-145A1 from 7, complete sequence
          Length = 153627

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 298    gagaaataggtcatctcatgtgta 321
              |||||||||| |||||||||||||
Sbjct: 132358 gagaaataggccatctcatgtgta 132335
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>ref|XM_366971.1| Magnaporthe grisea 70-15 chromosome VII hypothetical protein
           (MG03047.4) partial mRNA
          Length = 3852

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 1   gcggcgacgaggacgacggc 20
           ||||||||||||||||||||
Sbjct: 89  gcggcgacgaggacgacggc 108
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>gb|AC090871.11| Oryza sativa chromosome 3 BAC OSJNBb0060J21 genomic sequence, complete
             sequence
          Length = 162497

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 1     gcggcgacgaggacgacggc 20
             ||||||||||||||||||||
Sbjct: 62001 gcggcgacgaggacgacggc 61982
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 1        gcggcgacgaggacgacggc 20
                ||||||||||||||||||||
Sbjct: 32681906 gcggcgacgaggacgacggc 32681925
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>gb|AC125047.5| Mus musculus BAC clone RP23-354G14 from chromosome 3, complete sequence
          Length = 200566

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 333    tttacaagaaagaaacattt 352
              ||||||||||||||||||||
Sbjct: 195340 tttacaagaaagaaacattt 195359
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>ref|XM_783011.1| PREDICTED: Strongylocentrotus purpuratus similar to Nephrin
           precursor (Renal glomerulus-specific cell adhesion
           receptor) (LOC583084), partial mRNA
          Length = 607

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 307 gtcatctcatgtgtagcatt 326
           ||||||||||||||||||||
Sbjct: 28  gtcatctcatgtgtagcatt 47
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>gb|CP000089.1| Dechloromonas aromatica RCB, complete genome
          Length = 4501104

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 146     ccacggcctgttcgtcaggc 165
               ||||||||||||||||||||
Sbjct: 2409468 ccacggcctgttcgtcaggc 2409487



 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 137     ctacggcttccacggcctgt 156
               ||||||||||||||||||||
Sbjct: 1066454 ctacggcttccacggcctgt 1066435
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>emb|CR555306.1| Azoarcus sp. EbN1 complete genome
          Length = 4296230

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                           
Query: 2       cggcgacgaggacgacggctacgtggtg 29
               |||||||||||| |||||||||| ||||
Sbjct: 4078546 cggcgacgaggaggacggctacgaggtg 4078519
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>emb|AL731596.3|OSJN00236 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0024J22,
             complete sequence
          Length = 174430

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 1     gcggcgacgaggacgacggc 20
             ||||||||||||||||||||
Sbjct: 95610 gcggcgacgaggacgacggc 95629
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>dbj|AP007255.1| Magnetospirillum magneticum AMB-1 DNA, complete genome
          Length = 4967148

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 137     ctacggcttccacggcctgt 156
               ||||||||||||||||||||
Sbjct: 2737009 ctacggcttccacggcctgt 2736990
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 1        gcggcgacgaggacgacggc 20
                ||||||||||||||||||||
Sbjct: 13981730 gcggcgacgaggacgacggc 13981749
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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
               sequence
          Length = 28386948

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 1       gcggcgacgaggacgacggc 20
               ||||||||||||||||||||
Sbjct: 2334165 gcggcgacgaggacgacggc 2334146
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>gb|AC009111.8| Homo sapiens chromosome 16 clone RP11-468D1, complete sequence
          Length = 153456

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 287   catacacataggagaaatag 306
             ||||||||||||||||||||
Sbjct: 55831 catacacataggagaaatag 55812
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>gb|AC010546.10| Homo sapiens chromosome 16 clone RP11-50O21, complete sequence
          Length = 181955

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 287   catacacataggagaaatag 306
             ||||||||||||||||||||
Sbjct: 26128 catacacataggagaaatag 26147
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>gb|AC007009.2|AC007009 Homo sapiens BAC clone RP11-560C1 from 7p22-p21, complete sequence
          Length = 152523

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 298   gagaaataggtcatctcatgtgta 321
             |||||||||| |||||||||||||
Sbjct: 67501 gagaaataggccatctcatgtgta 67478
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>gb|AY144442.1| Sorghum bicolor BAC 95A23/98N8.1 Rph region, partial sequence
          Length = 268433

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 1     gcggcgacgaggacgacggc 20
             ||||||||||||||||||||
Sbjct: 79155 gcggcgacgaggacgacggc 79174



 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 1     gcggcgacgaggacgacggc 20
             ||||||||||||||||||||
Sbjct: 57697 gcggcgacgaggacgacggc 57678
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>dbj|AP005149.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OSJNBb0005G07
          Length = 142850

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 1     gcggcgacgaggacgacggc 20
             ||||||||||||||||||||
Sbjct: 93067 gcggcgacgaggacgacggc 93048
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>dbj|BA000045.2| Gloeobacter violaceus PCC 7421 DNA, complete genome
          Length = 4659019

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 92      cgacctggacatcgtcgccg 111
               ||||||||||||||||||||
Sbjct: 4418147 cgacctggacatcgtcgccg 4418128
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>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome
          Length = 9105828

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 92     cgacctggacatcgtcgccg 111
              ||||||||||||||||||||
Sbjct: 576648 cgacctggacatcgtcgccg 576629
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>dbj|AP004159.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ1175_B01
          Length = 96191

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 5     cgacgaggacgacggctacg 24
             ||||||||||||||||||||
Sbjct: 32443 cgacgaggacgacggctacg 32462
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>dbj|AK067897.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013123L13, full
           insert sequence
          Length = 1359

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 1   gcggcgacgaggacgacggc 20
           ||||||||||||||||||||
Sbjct: 323 gcggcgacgaggacgacggc 304
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>dbj|AK067186.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013094J18, full
           insert sequence
          Length = 925

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 1   gcggcgacgaggacgacggc 20
           ||||||||||||||||||||
Sbjct: 318 gcggcgacgaggacgacggc 299
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>emb|AL845314.10| Zebrafish DNA sequence from clone CH211-153N11 in linkage group 20,
              complete sequence
          Length = 179498

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 336    acaagaaagaaacatttgtg 355
              ||||||||||||||||||||
Sbjct: 144400 acaagaaagaaacatttgtg 144419
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>emb|BX000362.6| Zebrafish DNA sequence from clone DKEYP-93D12 in linkage group 20,
             complete sequence
          Length = 205186

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 336   acaagaaagaaacatttgtg 355
             ||||||||||||||||||||
Sbjct: 77248 acaagaaagaaacatttgtg 77267
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>gb|U95953.1|ZMU95953 Zea mays viviparous-14 (vp14) mRNA, complete cds
          Length = 2498

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 32/36 (88%)
 Strand = Plus / Plus

                                                
Query: 117  cagcttccatcccgcgtcccctacggcttccacggc 152
            ||||| || |||||||| |||| |||||||||||||
Sbjct: 1837 cagctgccgtcccgcgtgcccttcggcttccacggc 1872
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>dbj|AP000857.4| Homo sapiens genomic DNA, chromosome 11q, clone:CMB9-103D18, complete
             sequences
          Length = 144484

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 333   tttacaagaaagaaacattt 352
             ||||||||||||||||||||
Sbjct: 45063 tttacaagaaagaaacattt 45044
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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 1       gcggcgacgaggacgacggc 20
               ||||||||||||||||||||
Sbjct: 2341946 gcggcgacgaggacgacggc 2341927
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>gb|AC125214.4| Mus musculus BAC clone RP23-84H24 from chromosome 3, complete sequence
          Length = 214943

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 333    tttacaagaaagaaacattt 352
              ||||||||||||||||||||
Sbjct: 163101 tttacaagaaagaaacattt 163082


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,610,948
Number of Sequences: 3902068
Number of extensions: 2610948
Number of successful extensions: 59961
Number of sequences better than 10.0: 61
Number of HSP's better than 10.0 without gapping: 64
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 59098
Number of HSP's gapped (non-prelim): 856
length of query: 365
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 343
effective length of database: 17,147,199,772
effective search space: 5881489521796
effective search space used: 5881489521796
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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