Clone Name | baak4f16 |
---|---|
Clone Library Name | barley_pub |
>ref|XM_480189.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2178 Score = 329 bits (166), Expect = 5e-87 Identities = 334/390 (85%) Strand = Plus / Plus Query: 142 gagagtggaaaaggagaggtgtgtcctcacactgagttaaatatatctctggctgataaa 201 ||||||||||||||||| |||| | |||||||||||||| ||||||| || ||||| Sbjct: 1513 gagagtggaaaaggagaagtgtcgctccacactgagttaaagatatctccagcagataag 1572 Query: 202 gctgagacaacacctgccacaggagctgaaacaagtgatgctttgggcaacaagaagaag 261 || || || | ||||||| ||||||||||||||||||| | ||| || || ||||| ||| Sbjct: 1573 gccgacaccaaacctgccgcaggagctgaaacaagtgacgtttttggaaataagaaaaag 1632 Query: 262 caggatcgctcttcatgtggttccaacacaccatcaagtagtgatgtagaggcagaacat 321 |||||||||||||||||||||||||||||||| |||||||||||| |||| ||||| || Sbjct: 1633 caggatcgctcttcatgtggttccaacacaccgtcaagtagtgatatagaagcagataat 1692 Query: 322 gttcctgagaaccaagatcaagctaacgacaagacacagcaagcatgttgcagtaattct 381 | ||||||||| ||||| | |||||||||||| || ||||||||| ||||||||| ||| Sbjct: 1693 gctcctgagaatcaagaaaaggctaacgacaaggcaaagcaagcatcttgcagtaactct 1752 Query: 382 tcagctggtgacatgaaccatcgcaggtttaggaacatttcaagcacgaatgattcatgg 441 ||||| ||||||| ||||| || || ||||||| || | ||||||| | |||||||||| Sbjct: 1753 tcagccggtgacaataaccaccgtagatttaggagcagtgcaagcacaagtgattcatgg 1812 Query: 442 aaggaagtttccgaggagggtcgtatggctttcgataaactgttcagtagaggaaagctt 501 ||||||||||| || ||||||||| ||||||| ||| |||||||||||||| || |||| Sbjct: 1813 aaggaagtttctgaagagggtcgtctggcttttgatgcactgttcagtagagaaaggctt 1872 Query: 502 ccccaaagcttttctcctccacaagcagaa 531 |||||||||||||||||||| |||| |||| Sbjct: 1873 ccccaaagcttttctcctccgcaagtagaa 1902
>dbj|AK104073.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-027-C12, full insert sequence Length = 1275 Score = 329 bits (166), Expect = 5e-87 Identities = 334/390 (85%) Strand = Plus / Plus Query: 142 gagagtggaaaaggagaggtgtgtcctcacactgagttaaatatatctctggctgataaa 201 ||||||||||||||||| |||| | |||||||||||||| ||||||| || ||||| Sbjct: 342 gagagtggaaaaggagaagtgtcgctccacactgagttaaagatatctccagcagataag 401 Query: 202 gctgagacaacacctgccacaggagctgaaacaagtgatgctttgggcaacaagaagaag 261 || || || | ||||||| ||||||||||||||||||| | ||| || || ||||| ||| Sbjct: 402 gccgacaccaaacctgccgcaggagctgaaacaagtgacgtttttggaaataagaaaaag 461 Query: 262 caggatcgctcttcatgtggttccaacacaccatcaagtagtgatgtagaggcagaacat 321 |||||||||||||||||||||||||||||||| |||||||||||| |||| ||||| || Sbjct: 462 caggatcgctcttcatgtggttccaacacaccgtcaagtagtgatatagaagcagataat 521 Query: 322 gttcctgagaaccaagatcaagctaacgacaagacacagcaagcatgttgcagtaattct 381 | ||||||||| ||||| | |||||||||||| || ||||||||| ||||||||| ||| Sbjct: 522 gctcctgagaatcaagaaaaggctaacgacaaggcaaagcaagcatcttgcagtaactct 581 Query: 382 tcagctggtgacatgaaccatcgcaggtttaggaacatttcaagcacgaatgattcatgg 441 ||||| ||||||| ||||| || || ||||||| || | ||||||| | |||||||||| Sbjct: 582 tcagccggtgacaataaccaccgtagatttaggagcagtgcaagcacaagtgattcatgg 641 Query: 442 aaggaagtttccgaggagggtcgtatggctttcgataaactgttcagtagaggaaagctt 501 ||||||||||| || ||||||||| ||||||| ||| |||||||||||||| || |||| Sbjct: 642 aaggaagtttctgaagagggtcgtctggcttttgatgcactgttcagtagagaaaggctt 701 Query: 502 ccccaaagcttttctcctccacaagcagaa 531 |||||||||||||||||||| |||| |||| Sbjct: 702 ccccaaagcttttctcctccgcaagtagaa 731
>gb|AY452478.1| Oryza sativa (japonica cultivar-group) circadian oscillator component (COC1) mRNA, complete cds Length = 2608 Score = 321 bits (162), Expect = 1e-84 Identities = 333/390 (85%) Strand = Plus / Plus Query: 142 gagagtggaaaaggagaggtgtgtcctcacactgagttaaatatatctctggctgataaa 201 ||||||||||||||||| |||| | |||||||||||||| ||||||| || ||||| Sbjct: 1759 gagagtggaaaaggagaagtgtcgctccacactgagttaaagatatctccagcagataag 1818 Query: 202 gctgagacaacacctgccacaggagctgaaacaagtgatgctttgggcaacaagaagaag 261 || || || | ||||||| ||||||||||||||||||| | ||| || || ||||| ||| Sbjct: 1819 gccgacaccaaacctgccgcaggagctgaaacaagtgacgtttttggaaataagaaaaag 1878 Query: 262 caggatcgctcttcatgtggttccaacacaccatcaagtagtgatgtagaggcagaacat 321 |||||||||||||||||||||||||||||||| |||||||||||| |||| ||||| || Sbjct: 1879 caggatcgctcttcatgtggttccaacacaccgtcaagtagtgatatagaagcagataat 1938 Query: 322 gttcctgagaaccaagatcaagctaacgacaagacacagcaagcatgttgcagtaattct 381 | ||||||||| ||||| | |||||||||||| || ||||||||| ||||||||| ||| Sbjct: 1939 gctcctgagaatcaagaaaaggctaacgacaaggcaaagcaagcatcttgcagtaactct 1998 Query: 382 tcagctggtgacatgaaccatcgcaggtttaggaacatttcaagcacgaatgattcatgg 441 ||||| ||||||| ||||| || || ||||||| || | ||||||| | |||||||||| Sbjct: 1999 tcagccggtgacaataaccaccgtagatttaggagcagtgcaagcacaagtgattcatgg 2058 Query: 442 aaggaagtttccgaggagggtcgtatggctttcgataaactgttcagtagaggaaagctt 501 ||||||||||| || |||||||| ||||||| ||| |||||||||||||| || |||| Sbjct: 2059 aaggaagtttctgaatagggtcgtctggcttttgatgcactgttcagtagagaaaggctt 2118 Query: 502 ccccaaagcttttctcctccacaagcagaa 531 |||||||||||||||||||| |||| |||| Sbjct: 2119 ccccaaagcttttctcctccgcaagtagaa 2148
>dbj|AK111893.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033071N16, full insert sequence Length = 3237 Score = 313 bits (158), Expect = 3e-82 Identities = 332/390 (85%) Strand = Plus / Plus Query: 142 gagagtggaaaaggagaggtgtgtcctcacactgagttaaatatatctctggctgataaa 201 ||||||||| ||||||| |||| | |||||||||||||| ||||||| || ||||| Sbjct: 2304 gagagtggagaaggagaagtgtcgctccacactgagttaaagatatctccagcagataag 2363 Query: 202 gctgagacaacacctgccacaggagctgaaacaagtgatgctttgggcaacaagaagaag 261 || || || | ||||||| ||||||||||||||||||| | ||| || || ||||| ||| Sbjct: 2364 gccgacaccaaacctgccgcaggagctgaaacaagtgacgtttttggaaataagaaaaag 2423 Query: 262 caggatcgctcttcatgtggttccaacacaccatcaagtagtgatgtagaggcagaacat 321 |||||||||||||||||||||||||||||||| |||||||||||| |||| ||||| || Sbjct: 2424 caggatcgctcttcatgtggttccaacacaccgtcaagtagtgatatagaagcagataat 2483 Query: 322 gttcctgagaaccaagatcaagctaacgacaagacacagcaagcatgttgcagtaattct 381 | ||||||||| ||||| | |||||||||||| || ||||||||| ||||||||| ||| Sbjct: 2484 gctcctgagaatcaagaaaaggctaacgacaaggcaaagcaagcatcttgcagtaactct 2543 Query: 382 tcagctggtgacatgaaccatcgcaggtttaggaacatttcaagcacgaatgattcatgg 441 ||||| ||||||| ||||| || || ||||||| || | ||||||| | |||||||||| Sbjct: 2544 tcagccggtgacaataaccaccgtagatttaggagcagtgcaagcacaagtgattcatgg 2603 Query: 442 aaggaagtttccgaggagggtcgtatggctttcgataaactgttcagtagaggaaagctt 501 ||||||||||| || | ||||||| ||||||| ||| |||||||||||||| || |||| Sbjct: 2604 aaggaagtttctgaagggggtcgtctggcttttgatgcactgttcagtagagaaaggctt 2663 Query: 502 ccccaaagcttttctcctccacaagcagaa 531 |||||||||||||||||||| |||| |||| Sbjct: 2664 ccccaaagcttttctcctccgcaagtagaa 2693
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 252 bits (127), Expect = 1e-63 Identities = 265/311 (85%) Strand = Plus / Plus Query: 142 gagagtggaaaaggagaggtgtgtcctcacactgagttaaatatatctctggctgataaa 201 ||||||||||||||||| |||| | |||||||||||||| ||||||| || ||||| Sbjct: 3366017 gagagtggaaaaggagaagtgtcgctccacactgagttaaagatatctccagcagataag 3366076 Query: 202 gctgagacaacacctgccacaggagctgaaacaagtgatgctttgggcaacaagaagaag 261 || || || | ||||||| ||||||||||||||||||| | ||| || || ||||| ||| Sbjct: 3366077 gccgacaccaaacctgccgcaggagctgaaacaagtgacgtttttggaaataagaaaaag 3366136 Query: 262 caggatcgctcttcatgtggttccaacacaccatcaagtagtgatgtagaggcagaacat 321 |||||||||||||||||||||||||||||||| |||||||||||| |||| ||||| || Sbjct: 3366137 caggatcgctcttcatgtggttccaacacaccgtcaagtagtgatatagaagcagataat 3366196 Query: 322 gttcctgagaaccaagatcaagctaacgacaagacacagcaagcatgttgcagtaattct 381 | ||||||||| ||||| | |||||||||||| || ||||||||| ||||||||| ||| Sbjct: 3366197 gctcctgagaatcaagaaaaggctaacgacaaggcaaagcaagcatcttgcagtaactct 3366256 Query: 382 tcagctggtgacatgaaccatcgcaggtttaggaacatttcaagcacgaatgattcatgg 441 ||||| ||||||| ||||| || || ||||||| || | ||||||| | |||||||||| Sbjct: 3366257 tcagccggtgacaataaccaccgtagatttaggagcagtgcaagcacaagtgattcatgg 3366316 Query: 442 aaggaagtttc 452 ||||||||||| Sbjct: 3366317 aaggaagtttc 3366327 Score = 83.8 bits (42), Expect = 5e-13 Identities = 66/74 (89%) Strand = Plus / Plus Query: 458 agggtcgtatggctttcgataaactgttcagtagaggaaagcttccccaaagcttttctc 517 |||||||| ||||||| ||| |||||||||||||| || |||||||||||||||||||| Sbjct: 3366423 agggtcgtctggcttttgatgcactgttcagtagagaaaggcttccccaaagcttttctc 3366482 Query: 518 ctccacaagcagaa 531 |||| |||| |||| Sbjct: 3366483 ctccgcaagtagaa 3366496
>dbj|AP004460.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0438H08 Length = 148626 Score = 252 bits (127), Expect = 1e-63 Identities = 265/311 (85%) Strand = Plus / Plus Query: 142 gagagtggaaaaggagaggtgtgtcctcacactgagttaaatatatctctggctgataaa 201 ||||||||||||||||| |||| | |||||||||||||| ||||||| || ||||| Sbjct: 143584 gagagtggaaaaggagaagtgtcgctccacactgagttaaagatatctccagcagataag 143643 Query: 202 gctgagacaacacctgccacaggagctgaaacaagtgatgctttgggcaacaagaagaag 261 || || || | ||||||| ||||||||||||||||||| | ||| || || ||||| ||| Sbjct: 143644 gccgacaccaaacctgccgcaggagctgaaacaagtgacgtttttggaaataagaaaaag 143703 Query: 262 caggatcgctcttcatgtggttccaacacaccatcaagtagtgatgtagaggcagaacat 321 |||||||||||||||||||||||||||||||| |||||||||||| |||| ||||| || Sbjct: 143704 caggatcgctcttcatgtggttccaacacaccgtcaagtagtgatatagaagcagataat 143763 Query: 322 gttcctgagaaccaagatcaagctaacgacaagacacagcaagcatgttgcagtaattct 381 | ||||||||| ||||| | |||||||||||| || ||||||||| ||||||||| ||| Sbjct: 143764 gctcctgagaatcaagaaaaggctaacgacaaggcaaagcaagcatcttgcagtaactct 143823 Query: 382 tcagctggtgacatgaaccatcgcaggtttaggaacatttcaagcacgaatgattcatgg 441 ||||| ||||||| ||||| || || ||||||| || | ||||||| | |||||||||| Sbjct: 143824 tcagccggtgacaataaccaccgtagatttaggagcagtgcaagcacaagtgattcatgg 143883 Query: 442 aaggaagtttc 452 ||||||||||| Sbjct: 143884 aaggaagtttc 143894 Score = 83.8 bits (42), Expect = 5e-13 Identities = 66/74 (89%) Strand = Plus / Plus Query: 458 agggtcgtatggctttcgataaactgttcagtagaggaaagcttccccaaagcttttctc 517 |||||||| ||||||| ||| |||||||||||||| || |||||||||||||||||||| Sbjct: 143990 agggtcgtctggcttttgatgcactgttcagtagagaaaggcttccccaaagcttttctc 144049 Query: 518 ctccacaagcagaa 531 |||| |||| |||| Sbjct: 144050 ctccgcaagtagaa 144063
>dbj|AK121547.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033032F11, full insert sequence Length = 650 Score = 83.8 bits (42), Expect = 5e-13 Identities = 66/74 (89%) Strand = Plus / Plus Query: 458 agggtcgtatggctttcgataaactgttcagtagaggaaagcttccccaaagcttttctc 517 |||||||| ||||||| ||| |||||||||||||| || |||||||||||||||||||| Sbjct: 22 agggtcgtctggcttttgatgcactgttcagtagagaaaggcttccccaaagcttttctc 81 Query: 518 ctccacaagcagaa 531 |||| |||| |||| Sbjct: 82 ctccgcaagtagaa 95
>gb|BT012912.1| Lycopersicon esculentum clone 114030R, mRNA sequence Length = 2735 Score = 58.0 bits (29), Expect = 3e-05 Identities = 38/41 (92%) Strand = Plus / Plus Query: 265 gatcgctcttcatgtggttccaacacaccatcaagtagtga 305 ||||||||||| ||||| ||||||||||| ||||||||||| Sbjct: 1892 gatcgctcttcctgtggatccaacacaccttcaagtagtga 1932
>gb|AY371287.1| Mesembryanthemum crystallinum circadian clock associated1 (CCA1) mRNA, complete cds Length = 3051 Score = 58.0 bits (29), Expect = 3e-05 Identities = 38/41 (92%) Strand = Plus / Plus Query: 268 cgctcttcatgtggttccaacacaccatcaagtagtgatgt 308 |||||||| ||||||||||||||||| ||| |||||||||| Sbjct: 2264 cgctcttcttgtggttccaacacaccctcaggtagtgatgt 2304
>ref|NM_179237.1| Arabidopsis thaliana LHY (LATE ELONGATED HYPOCOTYL); DNA binding / transcription factor AT1G01060 (LHY) transcript variant AT1G01060.2 mRNA, complete cds Length = 2814 Score = 48.1 bits (24), Expect = 0.029 Identities = 33/36 (91%) Strand = Plus / Plus Query: 432 tgattcatggaaggaagtttccgaggagggtcgtat 467 |||||| ||||||||||| ||||| ||||||||||| Sbjct: 2125 tgattcgtggaaggaagtctccgaagagggtcgtat 2160
>ref|NM_099988.3| Arabidopsis thaliana LHY (LATE ELONGATED HYPOCOTYL); DNA binding / transcription factor AT1G01060 (LHY) transcript variant AT1G01060.1 mRNA, complete cds Length = 2704 Score = 48.1 bits (24), Expect = 0.029 Identities = 33/36 (91%) Strand = Plus / Plus Query: 432 tgattcatggaaggaagtttccgaggagggtcgtat 467 |||||| ||||||||||| ||||| ||||||||||| Sbjct: 2015 tgattcgtggaaggaagtctccgaagagggtcgtat 2050
>ref|NM_001035847.1| Arabidopsis thaliana LHY (LATE ELONGATED HYPOCOTYL); DNA binding AT1G01060 (LHY) transcript variant AT1G01060.3 mRNA, complete cds Length = 2517 Score = 48.1 bits (24), Expect = 0.029 Identities = 33/36 (91%) Strand = Plus / Plus Query: 432 tgattcatggaaggaagtttccgaggagggtcgtat 467 |||||| ||||||||||| ||||| ||||||||||| Sbjct: 1932 tgattcgtggaaggaagtctccgaagagggtcgtat 1967
>gb|AY519507.1| Arabidopsis thaliana MYB transcription factor (At1g01060) mRNA, complete cds Length = 1938 Score = 48.1 bits (24), Expect = 0.029 Identities = 33/36 (91%) Strand = Plus / Plus Query: 432 tgattcatggaaggaagtttccgaggagggtcgtat 467 |||||| ||||||||||| ||||| ||||||||||| Sbjct: 1575 tgattcgtggaaggaagtctccgaagagggtcgtat 1610
>emb|BX817115.1|CNS0AELF Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH86ZB04 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress) Length = 2427 Score = 48.1 bits (24), Expect = 0.029 Identities = 33/36 (91%) Strand = Plus / Plus Query: 432 tgattcatggaaggaagtttccgaggagggtcgtat 467 |||||| ||||||||||| ||||| ||||||||||| Sbjct: 2002 tgattcgtggaaggaagtctccgaagagggtcgtat 2037
>emb|AJ006404.1|ATAJ6404 Arabidopsis thaliana mRNA for LATE ELONGATED HYPOCOTYL MYB transcription factor Length = 2526 Score = 48.1 bits (24), Expect = 0.029 Identities = 33/36 (91%) Strand = Plus / Plus Query: 432 tgattcatggaaggaagtttccgaggagggtcgtat 467 |||||| ||||||||||| ||||| ||||||||||| Sbjct: 1912 tgattcgtggaaggaagtctccgaagagggtcgtat 1947
>ref|XM_649403.1| Entamoeba histolytica HM-1:IMSS lysozyme (52.t00007) partial mRNA Length = 2244 Score = 44.1 bits (22), Expect = 0.46 Identities = 25/26 (96%) Strand = Plus / Plus Query: 278 gtggttccaacacaccatcaagtagt 303 ||||||| |||||||||||||||||| Sbjct: 941 gtggttcaaacacaccatcaagtagt 966
>gb|AC125188.4| Mus musculus BAC clone RP23-303O19 from chromosome 9, complete sequence Length = 194053 Score = 44.1 bits (22), Expect = 0.46 Identities = 25/26 (96%) Strand = Plus / Minus Query: 217 gccacaggagctgaaacaagtgatgc 242 |||||||||||||| ||||||||||| Sbjct: 67067 gccacaggagctgatacaagtgatgc 67042
>gb|AC154486.2| Mus musculus BAC clone RP24-118H13 from chromosome 17, complete sequence Length = 197387 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 116 tagttgtagcatcttctgggt 136 ||||||||||||||||||||| Sbjct: 63763 tagttgtagcatcttctgggt 63783
>gb|AC124977.8| Mus musculus chromosome 7, clone RP24-89J20, complete sequence Length = 239915 Score = 42.1 bits (21), Expect = 1.8 Identities = 24/25 (96%) Strand = Plus / Plus Query: 332 accaagatcaagctaacgacaagac 356 |||||||||||||||||| |||||| Sbjct: 39317 accaagatcaagctaacgtcaagac 39341
>gb|AY334435.1| Candidatus Blochmannia sayi isolate Csayi13 heat shock protein (groEL) gene, partial cds Length = 1602 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 110 ctatgatagttgtagcatctt 130 ||||||||||||||||||||| Sbjct: 1044 ctatgatagttgtagcatctt 1024
>gb|AC127172.13| Mus musculus strain C57BL/6J clone rp23-387d2 map 17, complete sequence Length = 203077 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 309 agaggcagaacatgttcctga 329 ||||||||||||||||||||| Sbjct: 109486 agaggcagaacatgttcctga 109506
>emb|AL645683.7| Mouse DNA sequence from clone RP23-374M7 on chromosome 13 Contains the V1ri9 gene for vomeronasal 1 receptor I9 and the gene for a novel vomeronasal 1 receptor I (V1ri) family member, complete sequence Length = 77611 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 201 agctgagacaacacctgccac 221 ||||||||||||||||||||| Sbjct: 48803 agctgagacaacacctgccac 48823
>gb|AC164567.5| Mus musculus BAC clone RP23-64B8 from chromosome 10, complete sequence Length = 262262 Score = 42.1 bits (21), Expect = 1.8 Identities = 24/25 (96%) Strand = Plus / Minus Query: 49 tgcccagtggacaacgcaccaaagg 73 ||||||||||||| ||||||||||| Sbjct: 143624 tgcccagtggacagcgcaccaaagg 143600
>gb|AC140940.1| Gallus gallus BAC clone TAM32-30H10 from chromosome ul, complete sequence Length = 105327 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 511 ttttctcctccacaagcagaa 531 ||||||||||||||||||||| Sbjct: 41831 ttttctcctccacaagcagaa 41811
>emb|AL589878.12| Mouse DNA sequence from clone RP23-351C7 on chromosome 15, complete sequence Length = 203949 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 309 agaggcagaacatgttcctga 329 ||||||||||||||||||||| Sbjct: 94112 agaggcagaacatgttcctga 94092
>gb|AC139325.4| Mus musculus BAC clone RP24-373O11 from chromosome 16, complete sequence Length = 155728 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 117 agttgtagcatcttctgggt 136 |||||||||||||||||||| Sbjct: 153664 agttgtagcatcttctgggt 153683
>gb|AC126693.3| Mus musculus BAC clone RP23-247E23 from chromosome 16, complete sequence Length = 199505 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 117 agttgtagcatcttctgggt 136 |||||||||||||||||||| Sbjct: 128795 agttgtagcatcttctgggt 128776
>gb|AC125139.4| Mus musculus BAC clone RP24-326G1 from chromosome 1, complete sequence Length = 149229 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 117 agttgtagcatcttctgggt 136 |||||||||||||||||||| Sbjct: 17812 agttgtagcatcttctgggt 17831
>gb|AC006044.2| Homo sapiens BAC clone RP11-539B24 from 7, complete sequence Length = 141509 Score = 40.1 bits (20), Expect = 7.2 Identities = 26/28 (92%) Strand = Plus / Plus Query: 364 gcatgttgcagtaattcttcagctggtg 391 ||||||||| ||| |||||||||||||| Sbjct: 49582 gcatgttgctgtacttcttcagctggtg 49609
>gb|BC002248.1| Mus musculus testis expressed gene 264, mRNA (cDNA clone MGC:7567 IMAGE:3493141), complete cds Length = 1423 Score = 40.1 bits (20), Expect = 7.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 219 cacaggagctgaaacaagtgatgc 242 |||||||||||| ||||||||||| Sbjct: 832 cacaggagctgatacaagtgatgc 855
>gb|BC006608.1| Mus musculus testis expressed gene 264, mRNA (cDNA clone MGC:7091 IMAGE:3157453), complete cds Length = 1381 Score = 40.1 bits (20), Expect = 7.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 219 cacaggagctgaaacaagtgatgc 242 |||||||||||| ||||||||||| Sbjct: 806 cacaggagctgatacaagtgatgc 829
>gb|AC111141.7| Mus musculus chromosome 3, clone RP23-369G12, complete sequence Length = 241179 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 117 agttgtagcatcttctgggt 136 |||||||||||||||||||| Sbjct: 55056 agttgtagcatcttctgggt 55037
>gb|AC102399.11| Mus musculus chromosome 3, clone RP24-217J3, complete sequence Length = 168566 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 117 agttgtagcatcttctgggt 136 |||||||||||||||||||| Sbjct: 96303 agttgtagcatcttctgggt 96284
>emb|AL449165.1| Human DNA sequence from clone RP11-533E16 on chromosome 6, complete sequence Length = 57313 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 431 atgattcatggaaggaagtt 450 |||||||||||||||||||| Sbjct: 4999 atgattcatggaaggaagtt 5018
>emb|AL354983.9| Human DNA sequence from clone RP11-108F13 on chromosome 1 Contains the 3' end of a novel gene (KIAA0133), a novel pseudogene and a high-mobility group box 1 (HMGB1) pseudogene, complete sequence Length = 77331 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 306 tgtagaggcagaacatgttc 325 |||||||||||||||||||| Sbjct: 41022 tgtagaggcagaacatgttc 41003
>emb|BX284637.10| Zebrafish DNA sequence from clone DKEY-1I9 in linkage group 17, complete sequence Length = 56129 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 272 cttcatgtggttccaacaca 291 |||||||||||||||||||| Sbjct: 32002 cttcatgtggttccaacaca 31983
>emb|BX936308.13| Zebrafish DNA sequence from clone CH211-152F6 in linkage group 3, complete sequence Length = 110020 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 272 cttcatgtggttccaacaca 291 |||||||||||||||||||| Sbjct: 76550 cttcatgtggttccaacaca 76569
>gb|AC158555.6| Mus musculus chromosome 3, clone RP23-14B10, complete sequence Length = 208510 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 117 agttgtagcatcttctgggt 136 |||||||||||||||||||| Sbjct: 17623 agttgtagcatcttctgggt 17642
>emb|BX914211.5| Zebrafish DNA sequence from clone DKEY-91D10 in linkage group 3, complete sequence Length = 179226 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 272 cttcatgtggttccaacaca 291 |||||||||||||||||||| Sbjct: 10119 cttcatgtggttccaacaca 10138
>gb|AC087558.13| Mus musculus strain C57BL/6J chromosome 2 clone rp23-282p18, complete sequence Length = 217766 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 117 agttgtagcatcttctgggt 136 |||||||||||||||||||| Sbjct: 64967 agttgtagcatcttctgggt 64948
>dbj|AK159046.1| Mus musculus visual cortex cDNA, RIKEN full-length enriched library, clone:K530044I02 product:testis expressed gene 264, full insert sequence Length = 2133 Score = 40.1 bits (20), Expect = 7.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 219 cacaggagctgaaacaagtgatgc 242 |||||||||||| ||||||||||| Sbjct: 1574 cacaggagctgatacaagtgatgc 1597
>dbj|AK003113.1| Mus musculus adult male heart cDNA, RIKEN full-length enriched library, clone:1010001E06 product:testis expressed gene 264, full insert sequence Length = 1388 Score = 40.1 bits (20), Expect = 7.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 219 cacaggagctgaaacaagtgatgc 242 |||||||||||| ||||||||||| Sbjct: 829 cacaggagctgatacaagtgatgc 852
>dbj|AK009326.1| Mus musculus adult male tongue cDNA, RIKEN full-length enriched library, clone:2310012P03 product:testis expressed gene 264, full insert sequence Length = 1733 Score = 40.1 bits (20), Expect = 7.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 219 cacaggagctgaaacaagtgatgc 242 |||||||||||| ||||||||||| Sbjct: 1174 cacaggagctgatacaagtgatgc 1197
>emb|BX664714.16| Zebrafish DNA sequence from clone DKEY-204C3 in linkage group 7, complete sequence Length = 159633 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 271 tcttcatgtggttccaacac 290 |||||||||||||||||||| Sbjct: 94067 tcttcatgtggttccaacac 94086
>dbj|AK046202.1| Mus musculus adult male corpora quadrigemina cDNA, RIKEN full-length enriched library, clone:B230352A17 product:unclassifiable, full insert sequence Length = 1783 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 117 agttgtagcatcttctgggt 136 |||||||||||||||||||| Sbjct: 1562 agttgtagcatcttctgggt 1543
>emb|BX322616.8| Zebrafish DNA sequence from clone DKEY-21K24 in linkage group 25, complete sequence Length = 232304 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 272 cttcatgtggttccaacaca 291 |||||||||||||||||||| Sbjct: 37175 cttcatgtggttccaacaca 37194
>ref|NM_011573.1| Mus musculus testis expressed gene 264 (Tex264), mRNA Length = 1733 Score = 40.1 bits (20), Expect = 7.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 219 cacaggagctgaaacaagtgatgc 242 |||||||||||| ||||||||||| Sbjct: 1174 cacaggagctgatacaagtgatgc 1197
>emb|AL592405.7| Mouse DNA sequence from clone RP23-358N17 on chromosome 2, complete sequence Length = 165818 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 117 agttgtagcatcttctgggt 136 |||||||||||||||||||| Sbjct: 123375 agttgtagcatcttctgggt 123394
>emb|AL845427.11| Mouse DNA sequence from clone RP23-436J19 on chromosome 2, complete sequence Length = 168207 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 117 agttgtagcatcttctgggt 136 |||||||||||||||||||| Sbjct: 64972 agttgtagcatcttctgggt 64953
>gb|AC107641.11| Mus musculus chromosome 7, clone RP23-54G8, complete sequence Length = 164725 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 117 agttgtagcatcttctgggt 136 |||||||||||||||||||| Sbjct: 78727 agttgtagcatcttctgggt 78746
>gb|AC155271.1| Mus musculus BAC clone RP23-204F12 from 16, complete sequence Length = 204679 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 117 agttgtagcatcttctgggt 136 |||||||||||||||||||| Sbjct: 155862 agttgtagcatcttctgggt 155843
>gb|AC154858.2| Mus musculus BAC clone RP23-12P20 from 14, complete sequence Length = 180592 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 117 agttgtagcatcttctgggt 136 |||||||||||||||||||| Sbjct: 101206 agttgtagcatcttctgggt 101225
>emb|CR381605.5| Zebrafish DNA sequence from clone CH211-156J19 in linkage group 21, complete sequence Length = 180526 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 272 cttcatgtggttccaacaca 291 |||||||||||||||||||| Sbjct: 145746 cttcatgtggttccaacaca 145727
>emb|AL929161.10| Zebrafish DNA sequence from clone CH211-93A19, complete sequence Length = 197027 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 271 tcttcatgtggttccaacac 290 |||||||||||||||||||| Sbjct: 113348 tcttcatgtggttccaacac 113367
>gb|AC131591.13| Mus musculus chromosome 1, clone RP24-541A5, complete sequence Length = 175644 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 117 agttgtagcatcttctgggt 136 |||||||||||||||||||| Sbjct: 8928 agttgtagcatcttctgggt 8909
>emb|AL808025.4| Mouse DNA sequence from clone RP23-45M22 on chromosome X, complete sequence Length = 227581 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 117 agttgtagcatcttctgggt 136 |||||||||||||||||||| Sbjct: 66093 agttgtagcatcttctgggt 66074
>emb|AL731735.14| Mouse DNA sequence from clone RP23-139P21 on chromosome X, complete sequence Length = 201223 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 117 agttgtagcatcttctgggt 136 |||||||||||||||||||| Sbjct: 11567 agttgtagcatcttctgggt 11548
>emb|AJ297131.1|MMAJ2971 Mus musculus SIL, MAP_17, CYP_a, SCL & CYP_b genes Length = 234411 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 117 agttgtagcatcttctgggt 136 |||||||||||||||||||| Sbjct: 186559 agttgtagcatcttctgggt 186540
>emb|AL844181.9| Mouse DNA sequence from clone RP23-128E7 on chromosome X, complete sequence Length = 139178 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 117 agttgtagcatcttctgggt 136 |||||||||||||||||||| Sbjct: 10985 agttgtagcatcttctgggt 11004
>emb|AL645473.12| Mouse DNA sequence from clone RP23-246H17 on chromosome 4, complete sequence Length = 162757 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 117 agttgtagcatcttctgggt 136 |||||||||||||||||||| Sbjct: 92122 agttgtagcatcttctgggt 92103
>emb|AL731651.1| Mouse DNA sequence from clone XX-PAC129 on chromosome 4, complete sequence Length = 147323 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 117 agttgtagcatcttctgggt 136 |||||||||||||||||||| Sbjct: 99471 agttgtagcatcttctgggt 99452 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,936,369 Number of Sequences: 3902068 Number of extensions: 4936369 Number of successful extensions: 90396 Number of sequences better than 10.0: 61 Number of HSP's better than 10.0 without gapping: 61 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 90238 Number of HSP's gapped (non-prelim): 158 length of query: 531 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 508 effective length of database: 17,143,297,704 effective search space: 8708795233632 effective search space used: 8708795233632 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)