>WIR1A_WHEAT (Q01482) WIR1A protein|
          Length = 88

 Score = 54.3 bits (129), Expect = 8e-08
 Identities = 38/78 (48%), Positives = 43/78 (55%), Gaps = 6/78 (7%)
 Frame = +1

Query: 1   ASPXXARFLVLLQIALFVI-SAVIISGPVCNGARP-----GLGGGALDPGSPVCVGGRCA 162
           +S    R  VLLQIALFV+ +A+II+  VC GA         G GALDP  P  V     
Sbjct: 6   SSAGGRRPTVLLQIALFVVVAAIIINSSVCLGATAVHDAAASGTGALDPNVPA-VPTPGG 64

Query: 163 PGQPYTRRGCSTVYKXPP 216
            GQPYT RGC TVY   P
Sbjct: 65  AGQPYTGRGCRTVYGCRP 82

>WIR1B_WHEAT (Q01481) WIR1B protein|
          Length = 85

 Score = 50.4 bits (119), Expect = 1e-06
 Identities = 37/76 (48%), Positives = 40/76 (52%), Gaps = 5/76 (6%)
 Frame = +1

Query: 4   SPXXARFLVLLQIALFV-ISAVIISGPVCNGAR----PGLGGGALDPGSPVCVGGRCAPG 168
           S    R   L+ IALFV I+AVII+  VC GA        G GALDP  P  V      G
Sbjct: 5   SAAGRRPTALVHIALFVAIAAVIINSSVCLGAAVHDAATSGTGALDPNVPA-VPTPGGAG 63

Query: 169 QPYTRRGCSTVYKXPP 216
           QPYT RGC TVY   P
Sbjct: 64  QPYTGRGCRTVYGCKP 79

>DGKQ_HUMAN (P52824) Diacylglycerol kinase theta (EC 2.7.1.107) (Diglyceride|
           kinase theta) (DGK-theta) (DAG kinase theta)
          Length = 942

 Score = 33.1 bits (74), Expect = 0.20
 Identities = 17/31 (54%), Positives = 18/31 (58%), Gaps = 5/31 (16%)
 Frame = +1

Query: 91  GARPGLGGGALDPGSPVC-----VGGRCAPG 168
           GAR  LGGG+  PGSP C      GGR  PG
Sbjct: 8   GARAWLGGGSPRPGSPACSPVLGSGGRARPG 38

>CI066_HUMAN (Q5T8R8) Protein C9orf66|
          Length = 295

 Score = 31.2 bits (69), Expect = 0.76
 Identities = 18/40 (45%), Positives = 22/40 (55%)
 Frame = +3

Query: 6   AGXRAFPGAPPDRSLRHLCRDHQRPRLQRSPPRTRWWCSG 125
           AG  A P APP +      R+   P L+R+PPRTR   SG
Sbjct: 61  AGAAARPAAPPPQP-----REPGAPGLRRAPPRTRMDSSG 95

>YDH3_SHV2C (P22577) Hypothetical 9.5 kDa protein in DHFR 3'region (ORF3)|
          Length = 103

 Score = 30.4 bits (67), Expect = 1.3
 Identities = 13/25 (52%), Positives = 13/25 (52%)
 Frame = +1

Query: 100 PGLGGGALDPGSPVCVGGRCAPGQP 174
           PG  GG   PG P   GG C PG P
Sbjct: 36  PGGPGGPCGPGGPCGPGGPCGPGGP 60



 Score = 29.3 bits (64), Expect = 2.9
 Identities = 13/25 (52%), Positives = 13/25 (52%)
 Frame = +1

Query: 100 PGLGGGALDPGSPVCVGGRCAPGQP 174
           PG  GG   PG P   GG C PG P
Sbjct: 30  PGGPGGPGGPGGPCGPGGPCGPGGP 54



 Score = 28.5 bits (62), Expect = 5.0
 Identities = 13/25 (52%), Positives = 13/25 (52%)
 Frame = +1

Query: 100 PGLGGGALDPGSPVCVGGRCAPGQP 174
           PG  GG   PG P   GG C PG P
Sbjct: 24  PGGPGGPGGPGGPGGPGGPCGPGGP 48

>COEA1_CHICK (P32018) Collagen alpha-1(XIV) chain precursor (Undulin)|
          Length = 1888

 Score = 30.0 bits (66), Expect = 1.7
 Identities = 19/49 (38%), Positives = 23/49 (46%)
 Frame = +1

Query: 28   VLLQIALFVISAVIISGPVCNGARPGLGGGALDPGSPVCVGGRCAPGQP 174
            +L QI    +S   I+GP     RPG  G   + GSP   G    PGQP
Sbjct: 1648 ILNQIPSQSVSTRTIAGPPGEPGRPGAPGPQGEQGSPGMQGFPGNPGQP 1696

>PER1_RAT (Q8CHI5) Period circadian protein 1 (rPER1) (Fragment)|
          Length = 1244

 Score = 30.0 bits (66), Expect = 1.7
 Identities = 18/38 (47%), Positives = 21/38 (55%)
 Frame = +1

Query: 70  ISGPVCNGARPGLGGGALDPGSPVCVGGRCAPGQPYTR 183
           +SGP+  GA    GGG   PG P C GG  +PG P  R
Sbjct: 1   MSGPL-EGAD---GGGDPRPGEPFCPGGVPSPGAPQHR 34

>PER1_MOUSE (O35973) Period circadian protein 1 (Circadian pacemaker protein|
           Rigui) (mPER) (M-Rigui)
          Length = 1291

 Score = 30.0 bits (66), Expect = 1.7
 Identities = 18/38 (47%), Positives = 21/38 (55%)
 Frame = +1

Query: 70  ISGPVCNGARPGLGGGALDPGSPVCVGGRCAPGQPYTR 183
           +SGP+  GA    GGG   PG P C GG  +PG P  R
Sbjct: 1   MSGPL-EGAD---GGGDPRPGEPFCPGGVPSPGAPQHR 34

>CO1A2_RANCA (O42350) Collagen alpha-2(I) chain precursor|
          Length = 1355

 Score = 29.3 bits (64), Expect = 2.9
 Identities = 14/35 (40%), Positives = 16/35 (45%)
 Frame = +1

Query: 76  GPVCNGARPGLGGGALDPGSPVCVGGRCAPGQPYT 180
           GP  N    G  GG  +PG P  +G    PG P T
Sbjct: 259 GPAGNNGPTGAAGGRGEPGPPGSLGPAGPPGNPGT 293

>COL2_CAEEL (P17656) Cuticle collagen 2 precursor|
          Length = 301

 Score = 29.3 bits (64), Expect = 2.9
 Identities = 14/30 (46%), Positives = 14/30 (46%)
 Frame = +1

Query: 85  CNGARPGLGGGALDPGSPVCVGGRCAPGQP 174
           CN   PG GG    PG P   G   APG P
Sbjct: 102 CNPGPPGPGGSPGKPGKPGKPGAPGAPGNP 131

>HSP1_RHIFE (Q8WNZ7) Sperm protamine P1|
          Length = 51

 Score = 28.9 bits (63), Expect = 3.8
 Identities = 17/38 (44%), Positives = 19/38 (50%), Gaps = 4/38 (10%)
 Frame = +3

Query: 60  CRDHQRPRL----QRSPPRTRWWCSGPR*SCVRRWTVR 161
           CR H R R     QR   R R  C   R +C RR+TVR
Sbjct: 6   CRSHSRSRSRRRRQRCRRRRRRSCGRRRRACYRRYTVR 43

>COL7_CAEEL (P18832) Cuticle collagen 7 precursor|
          Length = 316

 Score = 28.1 bits (61), Expect = 6.5
 Identities = 14/32 (43%), Positives = 15/32 (46%)
 Frame = +1

Query: 76  GPVCNGARPGLGGGALDPGSPVCVGGRCAPGQ 171
           GP  N   P  GGG   PG P   G   +PGQ
Sbjct: 154 GPNGNPGAPAQGGGQGPPGPPGPAGSAGSPGQ 185

>CO1A1_HUMAN (P02452) Collagen alpha-1(I) chain precursor|
          Length = 1464

 Score = 28.1 bits (61), Expect = 6.5
 Identities = 14/34 (41%), Positives = 18/34 (52%)
 Frame = +1

Query: 73  SGPVCNGARPGLGGGALDPGSPVCVGGRCAPGQP 174
           SGP   G  PG  G + +PG+P   G   A G+P
Sbjct: 418 SGPQGPGGPPGPKGNSGEPGAPGSKGDTGAKGEP 451

>PAFP_PHYAM (P81418) Antimicrobial peptide 1 precursor (AMP1) (Pa-AMP-1)|
           (Anti-fungal protein 1) (AFPS-1) (PAFP-S)
          Length = 65

 Score = 27.7 bits (60), Expect = 8.4
 Identities = 19/60 (31%), Positives = 27/60 (45%), Gaps = 2/60 (3%)
 Frame = +1

Query: 4   SPXXARFLVLLQIALFVISAVIISGPVCNGARPGLGGGALDPGSPVCVGGRC--APGQPY 177
           S    +F +++ + L VISAV+ +G + NG R          G P C    C    GQ Y
Sbjct: 5   SSAYLKFALVMILLLSVISAVMSAGCIKNGGRCNASA-----GPPYCCSSYCFQIAGQSY 59

>JUND_HUMAN (P17535) Transcription factor jun-D|
          Length = 347

 Score = 27.7 bits (60), Expect = 8.4
 Identities = 16/38 (42%), Positives = 17/38 (44%)
 Frame = +1

Query: 94  ARPGLGGGALDPGSPVCVGGRCAPGQPYTRRGCSTVYK 207
           A  GLGGGA   G      GR  PG P T    S + K
Sbjct: 10  ALSGLGGGASGSGGTFASPGRLFPGAPPTAAAGSMMKK 47

>COL34_CAEEL (P34687) Cuticle collagen 34 (Abnormal ray morphology protein 4)|
          Length = 299

 Score = 27.7 bits (60), Expect = 8.4
 Identities = 14/33 (42%), Positives = 17/33 (51%)
 Frame = +1

Query: 76  GPVCNGARPGLGGGALDPGSPVCVGGRCAPGQP 174
           GP      PG  G + +PGSP   G   APG+P
Sbjct: 151 GPPGPPGPPGPPGDSGEPGSPGLPGQDAAPGEP 183

>IF2_NOCFA (Q5YSC6) Translation initiation factor IF-2|
          Length = 969

 Score = 27.7 bits (60), Expect = 8.4
 Identities = 16/38 (42%), Positives = 17/38 (44%), Gaps = 5/38 (13%)
 Frame = +1

Query: 76  GPVCNGARPGLGGGALDPGS-----PVCVGGRCAPGQP 174
           GP   G RPG G GA  PG+     P    G   PG P
Sbjct: 206 GPAQGGPRPGPGQGAPRPGATPGPRPAAAQGGPRPGGP 243


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 31,471,037
Number of Sequences: 219361
Number of extensions: 556492
Number of successful extensions: 2914
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 2237
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2890
length of database: 80,573,946
effective HSP length: 48
effective length of database: 70,044,618
effective search space used: 1681070832
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)