ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name baak4f14
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|M95500.1|WHTWIR1APR Wheat WIR1A gene, complete cds 48 0.011
2gb|AE011943.1| Xanthomonas axonopodis pv. citri str. 306, secti... 44 0.18
3ref|XM_547974.2| PREDICTED: Canis familiaris similar to CG32732-... 40 2.8
4emb|BX572600.1| Rhodopseudomonas palustris CGA009 complete genom... 40 2.8

>gb|M95500.1|WHTWIR1APR Wheat WIR1A gene, complete cds
          Length = 842

 Score = 48.1 bits (24), Expect = 0.011
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                       
Query: 27  ggtgctcctccagatcgctctcttcgtc 54
           ||||||||| ||||||||||||||||||
Sbjct: 200 ggtgctcctgcagatcgctctcttcgtc 227



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>gb|AE011943.1| Xanthomonas axonopodis pv. citri str. 306,  section 321 of 469 of
           the complete genome
          Length = 10029

 Score = 44.1 bits (22), Expect = 0.18
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 152 gacggtgcgcgcctggccagcc 173
           ||||||||||||||||||||||
Sbjct: 738 gacggtgcgcgcctggccagcc 759



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>ref|XM_547974.2| PREDICTED: Canis familiaris similar to CG32732-PA (LOC490852), mRNA
          Length = 2695

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 101  caggactcggtggtggtgctctgg 124
            ||||||| ||||||||||||||||
Sbjct: 2164 caggactgggtggtggtgctctgg 2187



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>emb|BX572600.1| Rhodopseudomonas palustris CGA009 complete genome; segment 8/16
          Length = 349640

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 100    ccaggactcggtggtggtgc 119
              ||||||||||||||||||||
Sbjct: 236077 ccaggactcggtggtggtgc 236096


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,151,756
Number of Sequences: 3902068
Number of extensions: 1151756
Number of successful extensions: 89326
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 89319
Number of HSP's gapped (non-prelim): 7
length of query: 218
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 196
effective length of database: 17,147,199,772
effective search space: 3360851155312
effective search space used: 3360851155312
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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