ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | baak4f12 |
|---|---|
| Clone Library Name | barley_pub |
>SCS_SALOF (O81191) 1,8-cineole synthase, chloroplast precursor (EC 4.2.3.-)| (SCS) Length = 591 Score = 51.2 bits (121), Expect = 2e-06 Identities = 33/104 (31%), Positives = 55/104 (52%), Gaps = 5/104 (4%) Frame = +1 Query: 106 ILRLWDDMGSAKDEAQDGLDGSYKELYLKENPGGNAEG--HMRALIGSEWEELNRECFSR 279 ILRL DDMG++ DE + G + Y+ E E H+R+LI W+ +N+E + Sbjct: 484 ILRLADDMGTSLDEVERGDVPKSVQCYMNEKNASEEEAREHVRSLIDQTWKMMNKEMMT- 542 Query: 280 RAFPPSMTRISLNLARMVRVLFDY---GEGQTLPVLEEYIRMLL 402 +F ++S NLARM + ++ + G G ++ + +R LL Sbjct: 543 SSFSKYFVQVSANLARMAQWIYQHESDGFGMQHSLVNKMLRGLL 586
>TPSD4_ABIGR (O64404) Delta-selinene synthase (EC 4.2.3.-) (Agfdsel1)| Length = 581 Score = 46.6 bits (109), Expect = 5e-05 Identities = 24/86 (27%), Positives = 44/86 (51%), Gaps = 3/86 (3%) Frame = +1 Query: 112 RLWDDMGSAKDEAQDGLDGSYKELYLKENPGG---NAEGHMRALIGSEWEELNRECFSRR 282 R+ DD+ +DE + G S + Y+KENP NA H++ ++ EE N E + Sbjct: 472 RIADDLKDFEDEKERGEMASSLQCYMKENPESTVENALNHIKGILNRSLEEFNWEFMKQD 531 Query: 283 AFPPSMTRISLNLARMVRVLFDYGEG 360 + P + + N+ R ++ ++ Y +G Sbjct: 532 SVPMCCKKFTFNIGRGLQFIYKYRDG 557
>BPPS_SALOF (O81192) (+)-bornyl diphosphate synthase, chloroplast precursor (EC| 5.5.1.8) (SBS) (BPPS) Length = 598 Score = 43.9 bits (102), Expect = 3e-04 Identities = 25/87 (28%), Positives = 44/87 (50%), Gaps = 2/87 (2%) Frame = +1 Query: 106 ILRLWDDMGSAKDEAQDGLDGSYKELYLKENPGGNAEG--HMRALIGSEWEELNRECFSR 279 ILRL DD+G++ E G + Y+KE E H++ LI W+++N + Sbjct: 491 ILRLPDDLGTSYFELARGDVPKTIQCYMKETNASEEEAVEHVKFLIREAWKDMNTAIAAG 550 Query: 280 RAFPPSMTRISLNLARMVRVLFDYGEG 360 FP M + N+ R+ + ++ +G+G Sbjct: 551 YPFPDGMVAGAANIGRVAQFIYLHGDG 577
>DCS1_GOSAR (Q39761) (+)-delta-cadinene synthase isozyme XC1 (EC 4.2.3.13)| (D-cadinene synthase) Length = 554 Score = 40.8 bits (94), Expect = 0.003 Identities = 28/89 (31%), Positives = 43/89 (48%), Gaps = 2/89 (2%) Frame = +1 Query: 106 ILRLWDDMGSAKDEAQDGLDGSYKELYLKENPGGNAEGH--MRALIGSEWEELNRECFSR 279 I R DD+ K + + D S E Y++E E + + S W++LN+E Sbjct: 446 ICRFMDDVAEHKFKHRREDDCSAIECYMEEYGVTAQEAYDVFNKHVESAWKDLNQEFLKP 505 Query: 280 RAFPPSMTRISLNLARMVRVLFDYGEGQT 366 P + SLNLAR++ VL+ G+G T Sbjct: 506 TEMPTEVLNRSLNLARVMDVLYREGDGYT 534
>RLC1_CITLI (Q8L5K3) (R)-limonene synthase 1 (EC 4.2.3.20) ((+)-limonene| synthase 1) Length = 606 Score = 40.4 bits (93), Expect = 0.003 Identities = 25/89 (28%), Positives = 44/89 (49%), Gaps = 3/89 (3%) Frame = +1 Query: 103 KILRLWDDMGSAKDEAQDGLDGSYKELYLKENPGGN--AEGHMRALIGSEWEELNRECFS 276 KI RL DD+G++ DE Q G + Y+ E A H++ ++ W+++N Sbjct: 481 KIFRLQDDLGTSSDEIQRGDVPKSIQCYMHETGASEEVARQHIKDMMRQMWKKVNAYTAD 540 Query: 277 RRA-FPPSMTRISLNLARMVRVLFDYGEG 360 + + + T LNL RM ++ +G+G Sbjct: 541 KDSPLTGTTTEFLLNLVRMSHFMYLHGDG 569
>DCS2_GOSAR (Q39760) (+)-delta-cadinene synthase isozyme XC14 (EC 4.2.3.13)| (D-cadinene synthase) Length = 554 Score = 40.0 bits (92), Expect = 0.005 Identities = 27/89 (30%), Positives = 43/89 (48%), Gaps = 2/89 (2%) Frame = +1 Query: 106 ILRLWDDMGSAKDEAQDGLDGSYKELYLKENPGGNAEGH--MRALIGSEWEELNRECFSR 279 I R DD+ K + + D S E Y++E E + + S W+++N+E Sbjct: 446 ICRFMDDVAEHKFKHRREDDCSAIECYMEEYGVTAQEAYDVFNKHVESAWKDVNKEFLKP 505 Query: 280 RAFPPSMTRISLNLARMVRVLFDYGEGQT 366 P + SLNLAR++ VL+ G+G T Sbjct: 506 TEMPTEVLNRSLNLARVMDVLYREGDGYT 534
>DCS4_GOSAR (O49853) (+)-delta-cadinene synthase isozyme C2 (EC 4.2.3.13)| (D-cadinene synthase) Length = 554 Score = 39.3 bits (90), Expect = 0.008 Identities = 27/89 (30%), Positives = 43/89 (48%), Gaps = 2/89 (2%) Frame = +1 Query: 106 ILRLWDDMGSAKDEAQDGLDGSYKELYLKENPGGNAEGH--MRALIGSEWEELNRECFSR 279 I R DD+ K + + D S E Y++E E + + S W+++N+E Sbjct: 446 ICRFMDDVAEHKFKHRREDDCSAIECYMEEYGVSAQEAYDVFNKHVESAWKDVNQEFQKP 505 Query: 280 RAFPPSMTRISLNLARMVRVLFDYGEGQT 366 P + SLNLAR++ VL+ G+G T Sbjct: 506 TEMPTEVLNRSLNLARVMDVLYREGDGYT 534
>DCS3_GOSAR (Q43714) (+)-delta-cadinene synthase isozyme A (EC 4.2.3.13)| (D-cadinene synthase) Length = 555 Score = 39.3 bits (90), Expect = 0.008 Identities = 28/89 (31%), Positives = 40/89 (44%), Gaps = 2/89 (2%) Frame = +1 Query: 106 ILRLWDDMGSAKDEAQDGLDGSYKELYLKEN--PGGNAEGHMRALIGSEWEELNRECFSR 279 I R DD+ K + D S E Y+K+ A I S W+++N E Sbjct: 447 ICRFMDDIAEHKFNHRREDDCSAIECYMKQYGVTAQEAYNEFNKHIESSWKDVNEEFLKP 506 Query: 280 RAFPPSMTRISLNLARMVRVLFDYGEGQT 366 P + SLNLAR++ VL+ G+G T Sbjct: 507 TEMPTPVLCRSLNLARVMDVLYREGDGYT 535
>SSS_SALOF (O81193) (+)-sabinene synthase, chloroplast precursor (EC 4.2.3.11)| (SSS) Length = 590 Score = 38.1 bits (87), Expect = 0.017 Identities = 25/88 (28%), Positives = 43/88 (48%), Gaps = 3/88 (3%) Frame = +1 Query: 106 ILRLWDDMGSAKDEAQDGLDGSYKELYLKENPGGNAEG--HMRALIGSEWEELNR-ECFS 276 ILRL DD+G+++ E + G + Y+ + E H++ LI W+E+N S Sbjct: 482 ILRLADDLGTSQHELERGDVPKAIQCYMNDTNASEREAVEHVKFLIREAWKEMNTVTTAS 541 Query: 277 RRAFPPSMTRISLNLARMVRVLFDYGEG 360 F + + NLAR + ++ G+G Sbjct: 542 DCPFTDDLVAAAANLARAAQFIYLDGDG 569
>CASS_RICCO (P59287) Casbene synthase, chloroplast precursor (EC 4.2.3.8)| Length = 601 Score = 37.4 bits (85), Expect = 0.029 Identities = 24/88 (27%), Positives = 41/88 (46%), Gaps = 2/88 (2%) Frame = +1 Query: 109 LRLWDDMGSAKDEAQDGLDGSYKELYLKENPGGNAEGH--MRALIGSEWEELNRECFSRR 282 +RL +D+ S E Q G S + Y+ ++ E ++ + W+E+N EC + Sbjct: 495 IRLVNDLTSHVTEQQRGHVASCIDCYMNQHGVSKDEAVKILQKMATDCWKEINEECMRQS 554 Query: 283 AFPPSMTRISLNLARMVRVLFDYGEGQT 366 +NLAR+ V + YG+G T Sbjct: 555 QVSVGHLMRIVNLARLTDVSYKYGDGYT 582
>DCS1_GOSHI (P93665) (+)-delta-cadinene synthase (EC 4.2.3.13) (D-cadinene| synthase) Length = 554 Score = 36.2 bits (82), Expect = 0.066 Identities = 26/89 (29%), Positives = 42/89 (47%), Gaps = 2/89 (2%) Frame = +1 Query: 106 ILRLWDDMGSAKDEAQDGLDGSYKELYLKENPGGNAEGH--MRALIGSEWEELNRECFSR 279 I R DD+ K + + D S E Y++E E + + S W+++N+ Sbjct: 446 ICRFMDDVTEHKFKHRREDDCSAIECYMEEYGVTAQEAYDVFNKHVESAWKDVNQGFLKP 505 Query: 280 RAFPPSMTRISLNLARMVRVLFDYGEGQT 366 P + SLNLAR++ VL+ G+G T Sbjct: 506 TEMPTEVLNRSLNLARVMDVLYREGDGYT 534
>TPSDA_ABIGR (O22340) Limonene synthase, chloroplast precursor (EC 4.2.3.16)| ((-)-(4S)-limonene synthase) (Agg-lim1) Length = 637 Score = 35.0 bits (79), Expect = 0.15 Identities = 26/92 (28%), Positives = 43/92 (46%), Gaps = 4/92 (4%) Frame = +1 Query: 106 ILRLWDDMGSAKDEAQDGLDGSYKELYLKENPGG---NAEGHMRALIGSEWEELNRECFS 276 ILRL D K + G + S Y+K++PG +A H+ A+I ELN E Sbjct: 527 ILRLRGDTRCYKADRARGEEASAISCYMKDHPGSIEEDALNHINAMISDAIRELNWELLR 586 Query: 277 RRAFPP-SMTRISLNLARMVRVLFDYGEGQTL 369 + P S + + ++ R ++ Y +G T+ Sbjct: 587 PDSKSPISSKKHAFDITRAFHHVYKYRDGYTV 618
>TPSD2_ABIGR (O24474) Myrcene synthase, chloroplast precursor (EC 4.2.3.15)| (Aggmyr) Length = 627 Score = 35.0 bits (79), Expect = 0.15 Identities = 25/88 (28%), Positives = 40/88 (45%), Gaps = 4/88 (4%) Frame = +1 Query: 109 LRLWDDMGSAKDEAQDGLDGSYKELYLKENPGGNAE---GHMRALIGSEWEELNRECF-S 276 LRL D K + G + S Y+K+NPG E H+ A++ +ELN E S Sbjct: 518 LRLRGDTRCYKADRDRGEEASCISCYMKDNPGSTEEDALNHINAMVNDIIKELNWELLRS 577 Query: 277 RRAFPPSMTRISLNLARMVRVLFDYGEG 360 P + + ++ R + L+ Y +G Sbjct: 578 NDNIPMLAKKHAFDITRALHHLYIYRDG 605
>TPSDB_ABIGR (Q9M7C9) Limonene/alpha-pinene synthase, chloroplast precursor| ((-)-(4S)-limonene synthase) (EC 4.2.3.-) ((-)-(1S,5S)-alpha-pinene synthase) (Agg-pin2) Length = 637 Score = 34.7 bits (78), Expect = 0.19 Identities = 25/92 (27%), Positives = 41/92 (44%), Gaps = 4/92 (4%) Frame = +1 Query: 106 ILRLWDDMGSAKDEAQDGLDGSYKELYLKENPGGNAE---GHMRALIGSEWEELNRECFS 276 +LRL D K + G + S Y+K++PG E H+ +I ELN E Sbjct: 527 LLRLRGDTRCYKADRARGEEASAISCYMKDHPGSTEEDALNHINVMISDAIRELNWELLR 586 Query: 277 RRAFPP-SMTRISLNLARMVRVLFDYGEGQTL 369 + P S + + ++ R L+ Y +G T+ Sbjct: 587 PDSKSPISSKKHAFDITRAFHHLYKYRDGYTV 618
>TPSD1_ABIGR (O81086) Alpha-bisabolene synthase (EC 4.2.3.-) ((E)-alpha-bisabolene| synthase) (AgfEabis) Length = 817 Score = 34.3 bits (77), Expect = 0.25 Identities = 30/109 (27%), Positives = 51/109 (46%), Gaps = 5/109 (4%) Frame = +1 Query: 106 ILRLWDDMGSAKDEAQDGLDGSYKELYLKENPGGNAE---GHMRALIGSEWEELNRECFS 276 I RL DD + K E G S E Y+K++P E H+ +++ +EL RE Sbjct: 708 ISRLADDTKTYKAEKARGELASSIECYMKDHPECTEEEALDHIYSILEPAVKELTREFLK 767 Query: 277 RRAFPPSMTRISLNLARMVRVLFDYGEGQTLPVLE--EYIRMLLL*IMP 417 P + ++ R+ V+F G+G + LE ++I+ L+ +P Sbjct: 768 PDDVPFACKKMLFEETRVTMVIFKDGDGFGVSKLEVKDHIKECLIEPLP 816
>TPSD8_ABIGR (Q9M7D1) Beta-phellandrene synthase, chloroplast precursor (EC| 4.2.3.-) ((-)-(4S)-beta-phellandrene synthase) (Agg-Bphe) Length = 630 Score = 33.9 bits (76), Expect = 0.33 Identities = 26/95 (27%), Positives = 43/95 (45%), Gaps = 4/95 (4%) Frame = +1 Query: 109 LRLWDDMGSAKDEAQDGLDGSYKELYLKENPG---GNAEGHMRALIGSEWEELNRECFSR 279 LRL D K + G + S Y+K+NPG +A H+ A+I +ELN E Sbjct: 521 LRLRGDTRCYKADRDRGEEASSISCYMKDNPGLTEEDALNHINAMINDIIKELNWELLKP 580 Query: 280 RA-FPPSMTRISLNLARMVRVLFDYGEGQTLPVLE 381 + P + + + + R L+ Y +G ++ E Sbjct: 581 DSNIPMTARKHAYEITRAFHQLYKYRDGFSVATQE 615
>TPSD9_ABIGR (Q9M7D0) Terpinolene synthase, chloroplast precursor (EC 4.2.3.-)| (Aggteo) Length = 630 Score = 33.5 bits (75), Expect = 0.43 Identities = 20/57 (35%), Positives = 30/57 (52%), Gaps = 3/57 (5%) Frame = +1 Query: 106 ILRLWDDMGSAKDEAQDGLDGSYKELYLKENPGGNAE---GHMRALIGSEWEELNRE 267 ILRL +D K + G + S Y+KENPG E H+ A++ + +E+N E Sbjct: 520 ILRLKNDTRCYKADRARGEEASCISCYMKENPGSTEEDAINHINAMVNNLIKEVNWE 576
>TPSD3_ABIGR (O24475) Pinene synthase, chloroplast precursor (EC 4.2.3.14)| (Beta-geraniolene synthase) ((-)-(1S,5S)-pinene synthase) (Agg-pin1) Length = 628 Score = 33.1 bits (74), Expect = 0.56 Identities = 27/96 (28%), Positives = 44/96 (45%), Gaps = 4/96 (4%) Frame = +1 Query: 106 ILRLWDDMGSAKDEAQDGLDGSYKELYLKENPGGNAE---GHMRALIGSEWEELNRECFS 276 ILRL D K + G + S Y+K+NPG + E H+ A+I + LN E Sbjct: 518 ILRLRGDTRCYKADRARGEEASSISCYMKDNPGVSEEDALDHINAMISDVIKGLNWELLK 577 Query: 277 RRA-FPPSMTRISLNLARMVRVLFDYGEGQTLPVLE 381 P S + + ++AR + Y +G ++ +E Sbjct: 578 PDINVPISAKKHAFDIARAFHYGYKYRDGYSVANVE 613
>HAIR_HUMAN (O43593) Protein hairless| Length = 1189 Score = 32.3 bits (72), Expect = 0.95 Identities = 18/40 (45%), Positives = 20/40 (50%), Gaps = 6/40 (15%) Frame = -1 Query: 229 PACAPPRC------HRGSLLGTTPCMIRPGHLALRPWHCP 128 PAC PPRC H G L + P +A RPWHCP Sbjct: 113 PAC-PPRCGPLMPEHSGGHLKSDP-------VAFRPWHCP 144
>ISPE_NITMU (Q2YBH5) 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase (EC| 2.7.1.148) (CMK) (4-(cytidine-5'-diphospho)-2-C-methyl-D-erythritol kinase) Length = 294 Score = 32.3 bits (72), Expect = 0.95 Identities = 22/70 (31%), Positives = 30/70 (42%), Gaps = 1/70 (1%) Frame = -1 Query: 283 PAWRSTLC*APPTHSRSAPACAPPRCHRGSL-LGTTPCMIRPGHLALRPWHCPCHPKVSR 107 PAW L PP H +A + R ++ + P GH L P C +P+V+R Sbjct: 174 PAWYLIL--TPPVHVSTAKVFSSKELTRNTIPIKIPPFSTEQGHNDLEPVVCASYPEVAR 231 Query: 106 SLTGRRLSEG 77 L R EG Sbjct: 232 HLEWLRQLEG 241
>LAMC3_MOUSE (Q9R0B6) Laminin gamma-3 chain precursor (Laminin 12 gamma 3| subunit) Length = 1581 Score = 31.2 bits (69), Expect = 2.1 Identities = 22/62 (35%), Positives = 25/62 (40%) Frame = -1 Query: 277 WRSTLC*APPTHSRSAPACAPPRCHRGSLLGTTPCMIRPGHLALRPWHCPCHPKVSRSLT 98 W+ C P HS S C P C+ LGT C R G +CPC V SL Sbjct: 419 WKCDRC-LPGFHSLSEGGCRPCACNVAGSLGT--CDPRSG-------NCPCKENVEGSLC 468 Query: 97 GR 92 R Sbjct: 469 DR 470
>EMID2_MOUSE (Q91VF6) Collagen alpha-1(XXVI) chain precursor (EMI| domain-containing protein 2) (Emu2 protein) (Emilin and multimerin domain-containing protein 2) Length = 440 Score = 30.8 bits (68), Expect = 2.8 Identities = 16/33 (48%), Positives = 18/33 (54%) Frame = -2 Query: 336 PHHPREVQRDPGHAGREGPPGEALSVELLPLTP 238 P PR + + G G GPPG A S LLP TP Sbjct: 239 PPGPRGLPGEMGRPGPPGPPGPAGSPGLLPNTP 271
>CONG_BOVIN (P23805) Conglutinin precursor| Length = 371 Score = 30.4 bits (67), Expect = 3.6 Identities = 20/60 (33%), Positives = 26/60 (43%) Frame = -2 Query: 453 LWFCHPLDSSVCGHDS*QEHPYVLLKDGERLPFSVVKQDPHHPREVQRDPGHAGREGPPG 274 L C PL+S + GHD +DG ++ PH + PG AGR G PG Sbjct: 37 LVMCSPLESGLPGHDG---------QDG--------RECPHGEKGDPGSPGPAGRAGRPG 79
>Y5G0_ENCCU (Q8STJ2) Hypothetical protein ECU05_1600/ECU11_0130| Length = 298 Score = 30.4 bits (67), Expect = 3.6 Identities = 17/44 (38%), Positives = 26/44 (59%) Frame = +1 Query: 274 SRRAFPPSMTRISLNLARMVRVLFDYGEGQTLPVLEEYIRMLLL 405 S+RA+ S+T + + A ++ V FDYG P+ E +R LLL Sbjct: 168 SQRAYYVSLTVVQMAFAIVLAVTFDYGNDAVAPL--ELLRALLL 209
>CL43_BOVIN (P42916) Collectin-43 precursor (CL-43) (43 kDa collectin)| Length = 321 Score = 30.4 bits (67), Expect = 3.6 Identities = 24/63 (38%), Positives = 27/63 (42%) Frame = -2 Query: 462 PALLWFCHPLDSSVCGHDS*QEHPYVLLKDGERLPFSVVKQDPHHPREVQRDPGHAGREG 283 P L C P S+ GHD +DG+ P K DP P PG AGREG Sbjct: 34 PCTLVVCAPPADSLRGHDG---------RDGKEGPQGE-KGDPGPPGM----PGPAGREG 79 Query: 282 PPG 274 P G Sbjct: 80 PSG 82
>TPSD6_ABIGR (Q948Z0) Camphene synthase, chloroplast precursor (EC 4.2.3.-)| ((-)-(1S,4R)-camphene synthase) (Agg-cam) Length = 618 Score = 30.0 bits (66), Expect = 4.7 Identities = 25/96 (26%), Positives = 44/96 (45%), Gaps = 4/96 (4%) Frame = +1 Query: 106 ILRLWDDMGSAKDEAQDGLDGSYKELYLKENPG---GNAEGHMRALIGSEWEELNRECFS 276 ILRL D K + G + S Y+K+NPG +A H+ +I ELN E Sbjct: 508 ILRLRGDTRCYKADRARGEEASSISCYMKDNPGLTEEDALNHINFMIRDAIRELNWELLK 567 Query: 277 -RRAFPPSMTRISLNLARMVRVLFDYGEGQTLPVLE 381 + P + + + +++R+ + Y +G + +E Sbjct: 568 PDNSVPITSKKHAFDISRVWHHGYRYRDGYSFANVE 603
>PI3R5_HUMAN (Q8WYR1) Phosphoinositide 3-kinase regulatory subunit 5 (PI3-kinase| regulatory subunit 5) (PI3-kinase p101 subunit) (PtdIns-3-kinase p101) (p101-PI3K) (Phosphatidylinositol-4,5-bisphosphate 3-kinase regulatory subunit) (PtdIns-3-kinase regula Length = 880 Score = 29.6 bits (65), Expect = 6.1 Identities = 14/37 (37%), Positives = 16/37 (43%) Frame = -1 Query: 247 THSRSAPACAPPRCHRGSLLGTTPCMIRPGHLALRPW 137 +H S AC PPR S +P PG L PW Sbjct: 564 SHGTSPGACPPPRSQTPSPPTDSPRHASPGELGTTPW 600
>ATF7_PONPY (Q5R9C9) Cyclic AMP-dependent transcription factor ATF-7| (Activating transcription factor 7) (Transcription factor ATF-A) Length = 483 Score = 29.6 bits (65), Expect = 6.1 Identities = 19/52 (36%), Positives = 27/52 (51%), Gaps = 6/52 (11%) Frame = -1 Query: 256 APPTHSRSAPACAPPRCHRGS-----LLGT-TPCMIRPGHLALRPWHCPCHP 119 +PP S+P C+PP + L+ T TP ++RPG L L + P HP Sbjct: 117 SPPDSPASSP-CSPPLKEKEVTPKPVLISTPTPTIVRPGSLPLHLGYDPLHP 167
>ATF7_HUMAN (P17544) Cyclic AMP-dependent transcription factor ATF-7| (Activating transcription factor 7) (Transcription factor ATF-A) Length = 494 Score = 29.6 bits (65), Expect = 6.1 Identities = 19/52 (36%), Positives = 27/52 (51%), Gaps = 6/52 (11%) Frame = -1 Query: 256 APPTHSRSAPACAPPRCHRGS-----LLGT-TPCMIRPGHLALRPWHCPCHP 119 +PP S+P C+PP + L+ T TP ++RPG L L + P HP Sbjct: 128 SPPDSPASSP-CSPPLKEKEVTPKPVLISTPTPTIVRPGSLPLHLGYDPLHP 178
>ZFNL5_ARATH (Q5RJC5) Zinc finger CCCH type domain-containing protein ZFN-like 5| Length = 435 Score = 29.6 bits (65), Expect = 6.1 Identities = 20/50 (40%), Positives = 26/50 (52%), Gaps = 6/50 (12%) Frame = +1 Query: 124 DMGSAKDEAQD-----GLDGSYKELYLKEN-PGGNAEGHMRALIGSEWEE 255 D+ +E D GLD S KEL + + P GN E RAL GS+ +E Sbjct: 36 DLNHVSEELSDQLRNVGLDDSAKELSVPISVPQGNVETDSRALFGSDQKE 85
>CO5A1_RAT (Q9JI03) Collagen alpha-1(V) chain precursor| Length = 1840 Score = 29.3 bits (64), Expect = 8.0 Identities = 10/12 (83%), Positives = 11/12 (91%) Frame = -2 Query: 306 PGHAGREGPPGE 271 PGH G+EGPPGE Sbjct: 764 PGHPGKEGPPGE 775
>CO5A1_CRILO (Q60467) Collagen alpha-1(V) chain precursor| Length = 1840 Score = 29.3 bits (64), Expect = 8.0 Identities = 10/12 (83%), Positives = 11/12 (91%) Frame = -2 Query: 306 PGHAGREGPPGE 271 PGH G+EGPPGE Sbjct: 764 PGHPGKEGPPGE 775
>CO5A1_MOUSE (O88207) Collagen alpha-1(V) chain precursor| Length = 1838 Score = 29.3 bits (64), Expect = 8.0 Identities = 10/12 (83%), Positives = 11/12 (91%) Frame = -2 Query: 306 PGHAGREGPPGE 271 PGH G+EGPPGE Sbjct: 762 PGHPGKEGPPGE 773
>CO5A1_HUMAN (P20908) Collagen alpha-1(V) chain precursor| Length = 1838 Score = 29.3 bits (64), Expect = 8.0 Identities = 10/12 (83%), Positives = 11/12 (91%) Frame = -2 Query: 306 PGHAGREGPPGE 271 PGH G+EGPPGE Sbjct: 762 PGHPGKEGPPGE 773
>TASY_TAXBR (Q41594) Taxadiene synthase (EC 4.2.3.17) (Taxa-4(5),11(12)-diene| synthase) Length = 862 Score = 29.3 bits (64), Expect = 8.0 Identities = 25/104 (24%), Positives = 44/104 (42%), Gaps = 6/104 (5%) Frame = +1 Query: 112 RLWDDMGSAKDEAQDGLDGSYKELYLKENPGGNAEG---HMRALIGSEWEELNRECFS-R 279 RL +D + + E G S Y+K+NPG E H+ ++ +E + E F Sbjct: 754 RLTNDTKTYQAEKARGQQASGIACYMKDNPGATEEDAIKHICRVVDRALKEASFEYFKPS 813 Query: 280 RAFPPSMTRISLNLARMVRVLFDY--GEGQTLPVLEEYIRMLLL 405 P NL V++ + + G G +++YIR + + Sbjct: 814 NDIPMGCKSFIFNLRLCVQIFYKFIDGYGIANEEIKDYIRKVYI 857
>TASY_TAXBA (Q93YA3) Taxadiene synthase (EC 4.2.3.17) (Taxa-4(5),11(12)-diene| synthase) Length = 862 Score = 29.3 bits (64), Expect = 8.0 Identities = 25/104 (24%), Positives = 44/104 (42%), Gaps = 6/104 (5%) Frame = +1 Query: 112 RLWDDMGSAKDEAQDGLDGSYKELYLKENPGGNAEG---HMRALIGSEWEELNRECFS-R 279 RL +D + + E G S Y+K+NPG E H+ ++ +E + E F Sbjct: 754 RLTNDTKTYQAEKARGQQASGIACYMKDNPGATEEDAIKHICRVVDRALKEASFEYFKPS 813 Query: 280 RAFPPSMTRISLNLARMVRVLFDY--GEGQTLPVLEEYIRMLLL 405 P NL V++ + + G G +++YIR + + Sbjct: 814 NDIPMGCKSFIFNLRLCVQIFYKFIDGYGIANEEIKDYIRKVYI 857 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 83,974,844 Number of Sequences: 219361 Number of extensions: 1841931 Number of successful extensions: 6737 Number of sequences better than 10.0: 36 Number of HSP's better than 10.0 without gapping: 5149 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 6678 length of database: 80,573,946 effective HSP length: 106 effective length of database: 57,321,680 effective search space used: 4643056080 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
