Clone Name | baak4f12 |
---|---|
Clone Library Name | barley_pub |
>ref|XM_463918.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2037 Score = 109 bits (55), Expect = 1e-20 Identities = 171/211 (81%), Gaps = 9/211 (4%) Strand = Plus / Plus Query: 75 catccctccgataatctcctgcccgtcaaagatcttgagactttgggatgacatgggcag 134 ||||||||| | ||||||||||| |||| ||||||||||| ||||||||| ||||||| Sbjct: 1474 catccctcctgtcatctcctgcccagcaaaaatcttgagactctgggatgacctgggcag 1533 Query: 135 tgccaaggacgaagcgcaagatggcctggacggatcatacaaggagttgtacctaaaaga 194 ||||||||| || || ||||| || |||||||||| ||||||||| | ||||| || || Sbjct: 1534 tgccaaggatgaggcacaagaaggattggacggatcgtacaaggagctatacctcaagga 1593 Query: 195 gaacc---------ccggtggcaacgcggaggggcacatgcgggcgctgatcgggagtga 245 ||||| ||| |||| | ||||||| |||| ||||| |||||||| | | || Sbjct: 1594 gaacccggggctcgccgctggcgaggcggaggagcacgtgcggcggctgatcgcgggcga 1653 Query: 246 gtgggaggagctcaacagagagtgcttctcc 276 |||||||||||||||| | |||||||||||| Sbjct: 1654 gtgggaggagctcaaccgggagtgcttctcc 1684
>dbj|AK110925.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-173-D07, full insert sequence Length = 2037 Score = 109 bits (55), Expect = 1e-20 Identities = 171/211 (81%), Gaps = 9/211 (4%) Strand = Plus / Plus Query: 75 catccctccgataatctcctgcccgtcaaagatcttgagactttgggatgacatgggcag 134 ||||||||| | ||||||||||| |||| ||||||||||| ||||||||| ||||||| Sbjct: 1474 catccctcctgtcatctcctgcccagcaaaaatcttgagactctgggatgacctgggcag 1533 Query: 135 tgccaaggacgaagcgcaagatggcctggacggatcatacaaggagttgtacctaaaaga 194 ||||||||| || || ||||| || |||||||||| ||||||||| | ||||| || || Sbjct: 1534 tgccaaggatgaggcacaagaaggattggacggatcgtacaaggagctatacctcaagga 1593 Query: 195 gaacc---------ccggtggcaacgcggaggggcacatgcgggcgctgatcgggagtga 245 ||||| ||| |||| | ||||||| |||| ||||| |||||||| | | || Sbjct: 1594 gaacccggggctcgccgctggcgaggcggaggagcacgtgcggcggctgatcgcgggcga 1653 Query: 246 gtgggaggagctcaacagagagtgcttctcc 276 |||||||||||||||| | |||||||||||| Sbjct: 1654 gtgggaggagctcaaccgggagtgcttctcc 1684
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 71.9 bits (36), Expect = 2e-09 Identities = 60/68 (88%) Strand = Plus / Plus Query: 75 catccctccgataatctcctgcccgtcaaagatcttgagactttgggatgacatgggcag 134 ||||||||| | ||||||||||| |||| ||||||||||| ||||||||| ||||||| Sbjct: 1150026 catccctcctgtcatctcctgcccagcaaaaatcttgagactctgggatgacctgggcag 1150085 Query: 135 tgccaagg 142 |||||||| Sbjct: 1150086 tgccaagg 1150093 Score = 60.0 bits (30), Expect = 8e-06 Identities = 57/66 (86%) Strand = Plus / Plus Query: 211 gcggaggggcacatgcgggcgctgatcgggagtgagtgggaggagctcaacagagagtgc 270 ||||||| |||| ||||| |||||||| | | |||||||||||||||||| | |||||| Sbjct: 1150634 gcggaggagcacgtgcggcggctgatcgcgggcgagtgggaggagctcaaccgggagtgc 1150693 Query: 271 ttctcc 276 |||||| Sbjct: 1150694 ttctcc 1150699
>dbj|AP004078.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1020_C02 Length = 124578 Score = 71.9 bits (36), Expect = 2e-09 Identities = 60/68 (88%) Strand = Plus / Plus Query: 75 catccctccgataatctcctgcccgtcaaagatcttgagactttgggatgacatgggcag 134 ||||||||| | ||||||||||| |||| ||||||||||| ||||||||| ||||||| Sbjct: 102550 catccctcctgtcatctcctgcccagcaaaaatcttgagactctgggatgacctgggcag 102609 Query: 135 tgccaagg 142 |||||||| Sbjct: 102610 tgccaagg 102617 Score = 60.0 bits (30), Expect = 8e-06 Identities = 57/66 (86%) Strand = Plus / Plus Query: 211 gcggaggggcacatgcgggcgctgatcgggagtgagtgggaggagctcaacagagagtgc 270 ||||||| |||| ||||| |||||||| | | |||||||||||||||||| | |||||| Sbjct: 103158 gcggaggagcacgtgcggcggctgatcgcgggcgagtgggaggagctcaaccgggagtgc 103217 Query: 271 ttctcc 276 |||||| Sbjct: 103218 ttctcc 103223
>gb|AY928082.1| Zea mays cultivar B73 terpene synthase 3 (TPS3) mRNA, complete cds Length = 1725 Score = 56.0 bits (28), Expect = 1e-04 Identities = 49/56 (87%) Strand = Plus / Plus Query: 219 gcacatgcgggcgctgatcgggagtgagtgggaggagctcaacagagagtgcttct 274 ||||||||| | ||||||| ||| ||||||| |||||||||||| |||||||||| Sbjct: 1533 gcacatgcgcggcctgatcgcgagggagtgggtggagctcaacagggagtgcttct 1588 Score = 40.1 bits (20), Expect = 7.7 Identities = 44/52 (84%) Strand = Plus / Plus Query: 83 cgataatctcctgcccgtcaaagatcttgagactttgggatgacatgggcag 134 |||| ||||||||||| | |||||| | || || ||||||||||||||||| Sbjct: 1388 cgatcatctcctgcccagccaagatcctcaggctctgggatgacatgggcag 1439
>ref|NM_197111.1| Oryza sativa (japonica cultivar-group) putative monoterpene synthase (OSJNBb0049A16.6), mRNA Length = 1407 Score = 50.1 bits (25), Expect = 0.008 Identities = 58/69 (84%) Strand = Plus / Plus Query: 75 catccctccgataatctcctgcccgtcaaagatcttgagactttgggatgacatgggcag 134 ||||||||| | ||||||||||| |||| ||||| ||||| ||||||||||| |||| Sbjct: 1074 catccctcctgtcatctcctgcccagcaaaaatcttcagactctgggatgacataggcaa 1133 Query: 135 tgccaagga 143 |||||||| Sbjct: 1134 cgccaagga 1142 Score = 48.1 bits (24), Expect = 0.031 Identities = 27/28 (96%) Strand = Plus / Plus Query: 161 tggacggatcatacaaggagttgtacct 188 |||| ||||||||||||||||||||||| Sbjct: 1148 tggatggatcatacaaggagttgtacct 1175
>gb|AC146481.2| Oryza sativa chromosome 10 B1288B10 genomic sequence, complete sequence Length = 58734 Score = 48.1 bits (24), Expect = 0.031 Identities = 57/68 (83%) Strand = Plus / Minus Query: 75 catccctccgataatctcctgcccgtcaaagatcttgagactttgggatgacatgggcag 134 ||||||||| | ||||||||||| |||| ||||| ||||| ||||||||||| |||| Sbjct: 30276 catccctcctgtcatctcctgcccagcaaaaatcttcagactctgggatgacataggcaa 30217 Query: 135 tgccaagg 142 ||||||| Sbjct: 30216 cgccaagg 30209 Score = 48.1 bits (24), Expect = 0.031 Identities = 27/28 (96%) Strand = Plus / Minus Query: 161 tggacggatcatacaaggagttgtacct 188 |||| ||||||||||||||||||||||| Sbjct: 29917 tggatggatcatacaaggagttgtacct 29890
>gb|AC090120.8| Oryza sativa chromosome 10 BAC OSJNBb0049A16 genomic sequence, complete sequence Length = 129585 Score = 48.1 bits (24), Expect = 0.031 Identities = 27/28 (96%) Strand = Plus / Plus Query: 161 tggacggatcatacaaggagttgtacct 188 |||| ||||||||||||||||||||||| Sbjct: 3249 tggatggatcatacaaggagttgtacct 3276 Score = 48.1 bits (24), Expect = 0.031 Identities = 57/68 (83%) Strand = Plus / Plus Query: 75 catccctccgataatctcctgcccgtcaaagatcttgagactttgggatgacatgggcag 134 ||||||||| | ||||||||||| |||| ||||| ||||| ||||||||||| |||| Sbjct: 2890 catccctcctgtcatctcctgcccagcaaaaatcttcagactctgggatgacataggcaa 2949 Query: 135 tgccaagg 142 ||||||| Sbjct: 2950 cgccaagg 2957
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 48.1 bits (24), Expect = 0.031 Identities = 57/68 (83%) Strand = Plus / Minus Query: 75 catccctccgataatctcctgcccgtcaaagatcttgagactttgggatgacatgggcag 134 ||||||||| | ||||||||||| |||| ||||| ||||| ||||||||||| |||| Sbjct: 18058143 catccctcctgtcatctcctgcccagcaaaaatcttcagactctgggatgacataggcaa 18058084 Query: 135 tgccaagg 142 ||||||| Sbjct: 18058083 cgccaagg 18058076 Score = 48.1 bits (24), Expect = 0.031 Identities = 27/28 (96%) Strand = Plus / Minus Query: 161 tggacggatcatacaaggagttgtacct 188 |||| ||||||||||||||||||||||| Sbjct: 18057784 tggatggatcatacaaggagttgtacct 18057757
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 48.1 bits (24), Expect = 0.031 Identities = 57/68 (83%) Strand = Plus / Minus Query: 75 catccctccgataatctcctgcccgtcaaagatcttgagactttgggatgacatgggcag 134 ||||||||| | ||||||||||| |||| ||||| ||||| ||||||||||| |||| Sbjct: 18067396 catccctcctgtcatctcctgcccagcaaaaatcttcagactctgggatgacataggcaa 18067337 Query: 135 tgccaagg 142 ||||||| Sbjct: 18067336 cgccaagg 18067329 Score = 48.1 bits (24), Expect = 0.031 Identities = 27/28 (96%) Strand = Plus / Minus Query: 161 tggacggatcatacaaggagttgtacct 188 |||| ||||||||||||||||||||||| Sbjct: 18067037 tggatggatcatacaaggagttgtacct 18067010
>gb|AC147095.2| Pan troglodytes BAC clone RP43-51E22 from 7, complete sequence Length = 152510 Score = 44.1 bits (22), Expect = 0.49 Identities = 25/26 (96%) Strand = Plus / Minus Query: 432 ctagaggatgacagaaccagagcaaa 457 ||||||||||||||||| |||||||| Sbjct: 45550 ctagaggatgacagaactagagcaaa 45525
>gb|AC073109.2| Homo sapiens BAC clone RP11-502P9 from 7, complete sequence Length = 158340 Score = 44.1 bits (22), Expect = 0.49 Identities = 25/26 (96%) Strand = Plus / Minus Query: 432 ctagaggatgacagaaccagagcaaa 457 ||||||||||||||||| |||||||| Sbjct: 132555 ctagaggatgacagaactagagcaaa 132530
>gb|AE000666.1| Methanothermobacter thermautotrophicus str. Delta H, complete genome Length = 1751377 Score = 44.1 bits (22), Expect = 0.49 Identities = 22/22 (100%) Strand = Plus / Plus Query: 373 gtccttgaggagtacataagga 394 |||||||||||||||||||||| Sbjct: 1106479 gtccttgaggagtacataagga 1106500
>emb|AL596025.22| Mouse DNA sequence from clone RP23-215H18 on chromosome 11 Contains a novel gene and the 3' end of a gene that is a possible ortholog of human dynein axonemal heavy polypeptide 9 (DNAH9), complete sequence Length = 190066 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 448 ccagagcaaagctggggtttt 468 ||||||||||||||||||||| Sbjct: 113536 ccagagcaaagctggggtttt 113516
>gb|AC114666.31| Mus musculus chromosome 5, clone RP24-175N6, complete sequence Length = 193158 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 428 gaatctagaggatgacagaa 447 |||||||||||||||||||| Sbjct: 2807 gaatctagaggatgacagaa 2826
>gb|AC165975.4| Mus musculus BAC clone RP23-3L23 from chromosome 5, complete sequence Length = 259091 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 428 gaatctagaggatgacagaa 447 |||||||||||||||||||| Sbjct: 186144 gaatctagaggatgacagaa 186163
>gb|AC136843.6| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0094M06, complete sequence Length = 135583 Score = 40.1 bits (20), Expect = 7.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 523 gtcaaacttttctaacattgacta 546 ||||||||||| |||||||||||| Sbjct: 55885 gtcaaacttttataacattgacta 55862
>gb|AC135398.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0079N13, complete sequence Length = 140946 Score = 40.1 bits (20), Expect = 7.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 523 gtcaaacttttctaacattgacta 546 ||||||||||| |||||||||||| Sbjct: 134981 gtcaaacttttataacattgacta 134958
>gb|AC115361.5| Mus musculus BAC clone RP24-76P12 from chromosome 8, complete sequence Length = 235095 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 395 tgctcctgttatgaatcatg 414 |||||||||||||||||||| Sbjct: 9031 tgctcctgttatgaatcatg 9012
>emb|AL606748.9| Human DNA sequence from clone RP13-43E11 on chromosome Xp21.1-21.3 Contains the 5' end of the SRPX gene for a chromosome X sushi-repeat-containing protein, a novel gene, the RPGR gene for retinitis pigmentosa GTPase regulator, the 5' end of the OTC gene for ornithine carbamoyltransferase and two CpG islands, complete sequence Length = 141577 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 452 agcaaagctggggttttccc 471 |||||||||||||||||||| Sbjct: 37350 agcaaagctggggttttccc 37331
>emb|AL136228.8| Human DNA sequence from clone RP1-66H9 on chromosome 6 Contains two CpG islands, complete sequence Length = 92460 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 444 agaaccagagcaaagctggg 463 |||||||||||||||||||| Sbjct: 52000 agaaccagagcaaagctggg 51981
>emb|BX294143.1| Pirellula sp. strain 1 complete genome; segment 11/24 Length = 303250 Score = 40.1 bits (20), Expect = 7.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 218 ggcacatgcgggcgctgatcggga 241 |||| ||||||||||||||||||| Sbjct: 226517 ggcaaatgcgggcgctgatcggga 226494
>gb|AC107051.4| Homo sapiens BAC clone RP11-224D4 from 4, complete sequence Length = 57025 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 8 ttgtgcatctcttttccatg 27 |||||||||||||||||||| Sbjct: 29301 ttgtgcatctcttttccatg 29282
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 40.1 bits (20), Expect = 7.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 523 gtcaaacttttctaacattgacta 546 ||||||||||| |||||||||||| Sbjct: 15883287 gtcaaacttttataacattgacta 15883264
>gb|AY943953.1| Streptomyces sp. FQ1 plasmid pFP1, complete sequence Length = 39360 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 269 gcttctccaggcgggccttc 288 |||||||||||||||||||| Sbjct: 3588 gcttctccaggcgggccttc 3569
>gb|AY871214.1| Oikopleura dioica Hox1 (Hox1) gene, partial cds Length = 3843 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 103 aagatcttgagactttggga 122 |||||||||||||||||||| Sbjct: 3467 aagatcttgagactttggga 3486
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 40.1 bits (20), Expect = 7.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 523 gtcaaacttttctaacattgacta 546 ||||||||||| |||||||||||| Sbjct: 15970663 gtcaaacttttataacattgacta 15970640
>gb|AC142414.3| Mus musculus BAC clone RP23-372N15 from 8, complete sequence Length = 192261 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 395 tgctcctgttatgaatcatg 414 |||||||||||||||||||| Sbjct: 116872 tgctcctgttatgaatcatg 116891
>emb|AL663028.12| Mouse DNA sequence from clone RP23-23J11 on chromosome 2, complete sequence Length = 110275 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 99 gtcaaagatcttgagacttt 118 |||||||||||||||||||| Sbjct: 41754 gtcaaagatcttgagacttt 41735 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,718,437 Number of Sequences: 3902068 Number of extensions: 3718437 Number of successful extensions: 69592 Number of sequences better than 10.0: 29 Number of HSP's better than 10.0 without gapping: 29 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 69432 Number of HSP's gapped (non-prelim): 160 length of query: 565 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 542 effective length of database: 17,143,297,704 effective search space: 9291667355568 effective search space used: 9291667355568 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)