ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | baak4f11 |
|---|---|
| Clone Library Name | barley_pub |
>PSAN_HORVU (P31093) Photosystem I reaction center subunit N, chloroplast| precursor (PSI-N) Length = 145 Score = 181 bits (460), Expect = 5e-46 Identities = 84/84 (100%), Positives = 84/84 (100%) Frame = +1 Query: 34 VFDEYLEKSKLNKELNDKKRAATSGANFARAYTVQFGSCKFPYNFTGCQDLAKQKKVPFI 213 VFDEYLEKSKLNKELNDKKRAATSGANFARAYTVQFGSCKFPYNFTGCQDLAKQKKVPFI Sbjct: 62 VFDEYLEKSKLNKELNDKKRAATSGANFARAYTVQFGSCKFPYNFTGCQDLAKQKKVPFI 121 Query: 214 TDDLEIECEGKEKFKCGSNVFWKW 285 TDDLEIECEGKEKFKCGSNVFWKW Sbjct: 122 TDDLEIECEGKEKFKCGSNVFWKW 145
>PSAN_MAIZE (O65107) Photosystem I reaction center subunit N, chloroplast| precursor (PSI-N) (Fragment) Length = 112 Score = 173 bits (438), Expect = 2e-43 Identities = 78/84 (92%), Positives = 82/84 (97%) Frame = +1 Query: 34 VFDEYLEKSKLNKELNDKKRAATSGANFARAYTVQFGSCKFPYNFTGCQDLAKQKKVPFI 213 +FDEYLEKSK NKELNDKKR ATSGANFARAYTV+FGSC+FPYNFTGCQDLAKQKKVPFI Sbjct: 29 IFDEYLEKSKANKELNDKKRLATSGANFARAYTVEFGSCQFPYNFTGCQDLAKQKKVPFI 88 Query: 214 TDDLEIECEGKEKFKCGSNVFWKW 285 +DDLEIECEGKEKFKCGSNVFWKW Sbjct: 89 SDDLEIECEGKEKFKCGSNVFWKW 112
>PSAN_ARATH (P49107) Photosystem I reaction center subunit N, chloroplast| precursor (PSI-N) Length = 171 Score = 160 bits (404), Expect = 2e-39 Identities = 71/84 (84%), Positives = 79/84 (94%) Frame = +1 Query: 34 VFDEYLEKSKLNKELNDKKRAATSGANFARAYTVQFGSCKFPYNFTGCQDLAKQKKVPFI 213 V DEYLE+SK NKELNDKKR ATSGANFARA+TVQFGSCKFP NFTGCQDLAKQKKVPFI Sbjct: 88 VIDEYLERSKTNKELNDKKRLATSGANFARAFTVQFGSCKFPENFTGCQDLAKQKKVPFI 147 Query: 214 TDDLEIECEGKEKFKCGSNVFWKW 285 ++D+ +ECEGK+K+KCGSNVFWKW Sbjct: 148 SEDIALECEGKDKYKCGSNVFWKW 171
>PSAN_VOLCA (Q9SBN5) Photosystem I reaction center subunit N, chloroplast| precursor (PSI-N) Length = 139 Score = 90.5 bits (223), Expect = 2e-18 Identities = 44/78 (56%), Positives = 56/78 (71%) Frame = +1 Query: 34 VFDEYLEKSKLNKELNDKKRAATSGANFARAYTVQFGSCKFPYNFTGCQDLAKQKKVPFI 213 V ++ L KS NK LN+KKR ATS AN AR+ TV G+C+FP NF GC++LA K V +I Sbjct: 55 VVEDLLAKSAANKALNNKKRLATSYANLARSRTVYDGTCQFPENFFGCEELAFNKGVKYI 114 Query: 214 TDDLEIECEGKEKFKCGS 267 +DL+IECEGK+ CGS Sbjct: 115 AEDLKIECEGKDAKSCGS 132
>PSAN_CUCSA (P42053) Photosystem I reaction center subunit N (Photosystem I 7.6| kDa protein) (PSI-N) (PS I subunit 9A) (Fragment) Length = 24 Score = 33.5 bits (75), Expect = 0.22 Identities = 15/23 (65%), Positives = 17/23 (73%) Frame = +1 Query: 34 VFDEYLEKSKLNKELNDKKRAAT 102 V ++YLEKSK N ELNDKK T Sbjct: 2 VXEDYLEKSKANLELNDKKXXXT 24
>POLG_PVYN (P18247) Genome polyprotein [Contains: P1 proteinase (N-terminal| protein); Helper component proteinase (EC 3.4.22.45) (HC-pro); Protein P3; 6 kDa protein 1 (6K1); Cytoplasmic inclusion protein (EC 3.6.1.-) (CI); 6 kDa protein 2 (6K2); Viral gen Length = 3063 Score = 32.0 bits (71), Expect = 0.65 Identities = 16/44 (36%), Positives = 25/44 (56%), Gaps = 5/44 (11%) Frame = +1 Query: 130 TVQFGS--CKFPYNFTGCQDLAKQKKVPFITD---DLEIECEGK 246 T+ FGS CK PY+ C+ + K+++VP D DLE + + Sbjct: 7 TICFGSFECKLPYSPASCEHIVKEREVPASVDPFADLETQLSAR 50
>POLG_PVYO (P22602) Genome polyprotein [Contains: P1 proteinase (N-terminal| protein); Helper component proteinase (EC 3.4.22.45) (HC-pro); Protein P3] (Fragment) Length = 856 Score = 30.4 bits (67), Expect = 1.9 Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 5/44 (11%) Frame = +1 Query: 130 TVQFGS--CKFPYNFTGCQDLAKQKKVPFITD---DLEIECEGK 246 T+ FGS CK PY+ C + K+++VP D DLE + + Sbjct: 7 TICFGSFECKLPYSPASCGHIVKEREVPASVDPFADLETQLSAR 50
>THIE_HAEIN (P71350) Thiamine-phosphate pyrophosphorylase (EC 2.5.1.3) (TMP| pyrophosphorylase) (TMP-PPase) (Thiamine-phosphate synthase) Length = 226 Score = 28.9 bits (63), Expect = 5.5 Identities = 14/28 (50%), Positives = 18/28 (64%), Gaps = 5/28 (17%) Frame = +1 Query: 175 CQDLAKQKKVPFITDD-----LEIECEG 243 C+DL ++ VPFI DD LEIE +G Sbjct: 69 CRDLCREYGVPFIVDDNVDLALEIEADG 96
>EXT2_MOUSE (P70428) Exostosin-2 (EC 2.4.1.224) (EC 2.4.1.225)| (Glucuronosyl-N-acetylglucosaminyl-proteoglycan/N- acetylglucosaminyl-proteoglycan 4-alpha-N-acetylglucosaminyltransferase) (Multiple exostoses protein 2 homolog) Length = 718 Score = 28.9 bits (63), Expect = 5.5 Identities = 20/83 (24%), Positives = 34/83 (40%), Gaps = 7/83 (8%) Frame = +1 Query: 34 VFDEYLEKSKLNKELNDKKRAATSGANFARAYTVQFGSCKFPYNFTG-------CQDLAK 192 ++D + K K E ++ +GA F Y + K P + C+D+A Sbjct: 572 LWDHEMNKWKYESEWTNEVSMVLTGAAFYHKYFNYLYTYKMPGDIKNWVDAHMNCEDIAM 631 Query: 193 QKKVPFITDDLEIECEGKEKFKC 261 V +T I+ ++KFKC Sbjct: 632 NFLVANVTGKAVIKVTPRKKFKC 654
>EXT2_HUMAN (Q93063) Exostosin-2 (EC 2.4.1.224) (EC 2.4.1.225)| (Glucuronosyl-N-acetylglucosaminyl-proteoglycan/N- acetylglucosaminyl-proteoglycan 4-alpha-N-acetylglucosaminyltransferase) (Putative tumor suppressor protein EXT2) (Multiple exostoses protein Length = 718 Score = 28.9 bits (63), Expect = 5.5 Identities = 20/83 (24%), Positives = 34/83 (40%), Gaps = 7/83 (8%) Frame = +1 Query: 34 VFDEYLEKSKLNKELNDKKRAATSGANFARAYTVQFGSCKFPYNFTG-------CQDLAK 192 ++D + K K E ++ +GA F Y + K P + C+D+A Sbjct: 572 LWDHEMNKWKYESEWTNEVSMVLTGAAFYHKYFNYLYTYKMPGDIKNWVDAHMNCEDIAM 631 Query: 193 QKKVPFITDDLEIECEGKEKFKC 261 V +T I+ ++KFKC Sbjct: 632 NFLVANVTGKAVIKVTPRKKFKC 654
>EXT2_BOVIN (O77783) Exostosin-2 (EC 2.4.1.224) (EC 2.4.1.225)| (Glucuronosyl-N-acetylglucosaminyl-proteoglycan/N- acetylglucosaminyl-proteoglycan 4-alpha-N-acetylglucosaminyltransferase) (HS-polymerase) (HS-POL) (Multiple exostoses protein 2 homolog) Length = 718 Score = 28.9 bits (63), Expect = 5.5 Identities = 20/83 (24%), Positives = 34/83 (40%), Gaps = 7/83 (8%) Frame = +1 Query: 34 VFDEYLEKSKLNKELNDKKRAATSGANFARAYTVQFGSCKFPYNFTG-------CQDLAK 192 ++D + K K E ++ +GA F Y + K P + C+D+A Sbjct: 572 LWDHEMNKWKYESEWTNEVSMVLTGAAFYHKYFNYLYTYKMPGDIKNWVDAHMNCEDIAM 631 Query: 193 QKKVPFITDDLEIECEGKEKFKC 261 V +T I+ ++KFKC Sbjct: 632 NFLVANVTGKAVIKVTPRKKFKC 654
>PSAN_PEA (P82339) Photosystem I reaction center subunit N (PSI-N)| (Fragment) Length = 14 Score = 28.1 bits (61), Expect = 9.4 Identities = 12/13 (92%), Positives = 12/13 (92%) Frame = +1 Query: 34 VFDEYLEKSKLNK 72 VFDEYLEKSK NK Sbjct: 2 VFDEYLEKSKANK 14 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 36,111,144 Number of Sequences: 219361 Number of extensions: 593805 Number of successful extensions: 1511 Number of sequences better than 10.0: 12 Number of HSP's better than 10.0 without gapping: 1496 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1509 length of database: 80,573,946 effective HSP length: 101 effective length of database: 58,418,485 effective search space used: 2453576370 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
