ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | baak4f10 |
|---|---|
| Clone Library Name | barley_pub |
>GOX1_ARATH (Q9LRS0) Probable peroxisomal (S)-2-hydroxy-acid oxidase 1 (EC| 1.1.3.15) (Glycolate oxidase 1) (GOX 1) (Short chain alpha-hydroxy acid oxidase 1) Length = 367 Score = 55.5 bits (132), Expect = 7e-08 Identities = 28/45 (62%), Positives = 34/45 (75%) Frame = +3 Query: 3 RNVLRMMREEFELTMALGGCTKLSDITREHIFTEGDRLGRPLPRM 137 + VL+M+R+EFELTMAL GC LS+ITR HI TE D R LPR+ Sbjct: 324 KKVLQMLRDEFELTMALSGCRSLSEITRNHIVTEWD-TPRHLPRL 367
>GOX2_ARATH (Q9LRR9) Probable peroxisomal (S)-2-hydroxy-acid oxidase 2 (EC| 1.1.3.15) (Glycolate oxidase 2) (GOX 2) (Short chain alpha-hydroxy acid oxidase 2) Length = 367 Score = 51.2 bits (121), Expect = 1e-06 Identities = 26/45 (57%), Positives = 32/45 (71%) Frame = +3 Query: 3 RNVLRMMREEFELTMALGGCTKLSDITREHIFTEGDRLGRPLPRM 137 R VL+M+R+EFELTMAL GC L +I+R HI TE D RP R+ Sbjct: 324 RKVLQMLRDEFELTMALSGCRSLKEISRNHITTEWD-TPRPSARL 367
>GOX_SPIOL (P05414) Peroxisomal (S)-2-hydroxy-acid oxidase (EC 1.1.3.15)| (Glycolate oxidase) (GOX) (Short chain alpha-hydroxy acid oxidase) Length = 369 Score = 47.8 bits (112), Expect = 1e-05 Identities = 21/36 (58%), Positives = 27/36 (75%) Frame = +3 Query: 3 RNVLRMMREEFELTMALGGCTKLSDITREHIFTEGD 110 + VL+MMR+EFELTMAL GC L +I+R HI + D Sbjct: 324 KKVLQMMRDEFELTMALSGCRSLKEISRSHIAADWD 359
>YWZ5_CAEEL (Q11095) Hypothetical protein C02B8.5| Length = 453 Score = 34.3 bits (77), Expect = 0.17 Identities = 10/22 (45%), Positives = 14/22 (63%) Frame = -2 Query: 407 NTIWCSRCEIWWKWRDVPVDKY 342 N+ WC C + W+WR +P D Y Sbjct: 412 NSEWCGLCNLCWQWRKLPADYY 433
>DSX_DROME (P23023) Protein doublesex| Length = 549 Score = 32.3 bits (72), Expect = 0.65 Identities = 26/95 (27%), Positives = 33/95 (34%), Gaps = 3/95 (3%) Frame = +2 Query: 8 RAAHDAGGVRAHHGARRVHQAQRHHPRTHLHRGRPPRTPAAEDVIKSQRHXXX---XXXX 178 R D V A A R QAQ H+H PP PAA ++ H Sbjct: 74 RLTADRQRVMALQTALRRAQAQDEQRALHMHEV-PPANPAATTLLSHHHHVAAPAHVHAH 132 Query: 179 XXXAGHMHASQYPPQRNATHAIITANSISTTPSAP 283 A H H + + H A + + PSAP Sbjct: 133 HVHAHHAHGGHHSHHGHVLHHQQAAAAAAAAPSAP 167
>CUT_DROME (P10180) Homeobox protein cut| Length = 2175 Score = 31.2 bits (69), Expect = 1.4 Identities = 27/104 (25%), Positives = 43/104 (41%), Gaps = 12/104 (11%) Frame = +2 Query: 5 ERAAHDAGGVRAHHGARRVHQAQ-----RHHPRTHLHR------GRPPRTPAAEDVIKSQ 151 + A DA AHH ++ HQ Q +HH + HLH+ + P + + + + Sbjct: 653 KNGASDALSEDAHHQQQQHHQQQHQHQQQHHQQQHLHQQHHHHLQQQPNSGSNSNPASND 712 Query: 152 RHXXXXXXXXXXAGHMHASQYPPQRNATHAIIT-ANSISTTPSA 280 H H H +P + H T +NS S+TP+A Sbjct: 713 HHHGHHL-------HGHGLLHPSSAHHLHHQTTESNSNSSTPTA 749
>PO3F2_RAT (P56222) POU domain, class 3, transcription factor 2 (Nervous| system-specific octamer-binding transcription factor N-Oct-3) (Brain-specific homeobox/POU domain protein 2) (Brain-2) (Protein Brn-2) Length = 445 Score = 30.8 bits (68), Expect = 1.9 Identities = 17/42 (40%), Positives = 19/42 (45%), Gaps = 8/42 (19%) Frame = +2 Query: 23 AGGVRA---HHGARRVHQAQRH-----HPRTHLHRGRPPRTP 124 AGG A HHG R H H HP +H H+ PP P Sbjct: 205 AGGQPAGLHHHGLRDAHDEPHHADHHPHPHSHPHQQPPPPPP 246
>PO3F2_MOUSE (P31360) POU domain, class 3, transcription factor 2 (Nervous| system-specific octamer-binding transcription factor N-Oct-3) (Brain-specific homeobox/POU domain protein 2) (Brain-2) (Protein Brn-2) Length = 445 Score = 30.8 bits (68), Expect = 1.9 Identities = 17/42 (40%), Positives = 19/42 (45%), Gaps = 8/42 (19%) Frame = +2 Query: 23 AGGVRA---HHGARRVHQAQRH-----HPRTHLHRGRPPRTP 124 AGG A HHG R H H HP +H H+ PP P Sbjct: 205 AGGQPAGLHHHGLRDAHDEPHHADHHPHPHSHPHQQPPPPPP 246
>PO3F2_HUMAN (P20265) POU domain, class 3, transcription factor 2 (Nervous| system-specific octamer-binding transcription factor N-Oct-3) (Brain-specific homeobox/POU domain protein 2) (Brain-2) (Protein Brn-2) Length = 443 Score = 30.8 bits (68), Expect = 1.9 Identities = 17/42 (40%), Positives = 19/42 (45%), Gaps = 8/42 (19%) Frame = +2 Query: 23 AGGVRA---HHGARRVHQAQRH-----HPRTHLHRGRPPRTP 124 AGG A HHG R H H HP +H H+ PP P Sbjct: 203 AGGQPAGLHHHGLRDAHDEPHHADHHPHPHSHPHQQPPPPPP 244
>KE4L_CAEEL (Q9XTQ7) Hypothetical Ke4-like protein H13N06.5 in chromosome X| Length = 462 Score = 30.4 bits (67), Expect = 2.5 Identities = 12/31 (38%), Positives = 13/31 (41%) Frame = +2 Query: 14 AHDAGGVRAHHGARRVHQAQRHHPRTHLHRG 106 AHD G HHG + HH H H G Sbjct: 89 AHDHGHAHDHHGHSHDEEEDHHHGHAHDHHG 119
>SC5A2_RABIT (P26430) Sodium/nucleoside cotransporter (Na(+)/nucleoside| cotransporter) Length = 672 Score = 30.4 bits (67), Expect = 2.5 Identities = 15/44 (34%), Positives = 27/44 (61%), Gaps = 1/44 (2%) Frame = -1 Query: 336 NLSTTAHRPRPDTHG*HLGADGVV-DIEFAVIIACVALRCGGYW 208 N+S++ +RPRPD++ HL D V D+ + ++ + + G YW Sbjct: 250 NISSSCYRPRPDSY--HLLRDPVTGDLPWPALLLGLTIVSGWYW 291
>SC5A2_MOUSE (Q923I7) Sodium/glucose cotransporter 2 (Na(+)/glucose| cotransporter 2) (Low affinity sodium-glucose cotransporter) Length = 670 Score = 30.4 bits (67), Expect = 2.5 Identities = 15/44 (34%), Positives = 27/44 (61%), Gaps = 1/44 (2%) Frame = -1 Query: 336 NLSTTAHRPRPDTHG*HLGADGVV-DIEFAVIIACVALRCGGYW 208 N+S+T ++PRPD++ HL D V D+ + ++ + + G YW Sbjct: 248 NISSTCYQPRPDSY--HLLRDPVTGDLPWPALLLGLTIVSGWYW 289
>FOXGA_HUMAN (P55316) Forkhead box protein G1A (Forkhead-related protein FKHL2)| (Transcription factor BF-2) (Brain factor 2) (BF2) (HFK2) Length = 469 Score = 29.6 bits (65), Expect = 4.2 Identities = 12/29 (41%), Positives = 12/29 (41%) Frame = +2 Query: 38 AHHGARRVHQAQRHHPRTHLHRGRPPRTP 124 A HG H Q HH H H PP P Sbjct: 35 ASHGHHNSHHPQHHHHHHHHHHHPPPPAP 63
>HAOX1_MOUSE (Q9WU19) Hydroxyacid oxidase 1 (EC 1.1.3.15) (HAOX1) (Glycolate| oxidase) (GOX) Length = 370 Score = 29.6 bits (65), Expect = 4.2 Identities = 12/28 (42%), Positives = 19/28 (67%) Frame = +3 Query: 3 RNVLRMMREEFELTMALGGCTKLSDITR 86 ++VL +++EEF L MAL GC + I + Sbjct: 330 QDVLEILKEEFRLAMALSGCQNVKVIDK 357
>HAOX1_HUMAN (Q9UJM8) Hydroxyacid oxidase 1 (EC 1.1.3.15) (HAOX1) (Glycolate| oxidase) (GOX) Length = 370 Score = 29.6 bits (65), Expect = 4.2 Identities = 12/28 (42%), Positives = 19/28 (67%) Frame = +3 Query: 3 RNVLRMMREEFELTMALGGCTKLSDITR 86 ++VL +++EEF L MAL GC + I + Sbjct: 330 QDVLEILKEEFRLAMALSGCQNVKVIDK 357
>FOXGB_HUMAN (P55315) Forkhead box protein G1B (Forkhead-related protein FKHL1)| (Transcription factor BF-1) (Brain factor 1) (BF1) (HFK1) Length = 477 Score = 29.6 bits (65), Expect = 4.2 Identities = 12/29 (41%), Positives = 12/29 (41%) Frame = +2 Query: 38 AHHGARRVHQAQRHHPRTHLHRGRPPRTP 124 A HG H Q HH H H PP P Sbjct: 35 ASHGHHNSHHPQHHHHHHHHHHHPPPPAP 63
>DHOM_PSEAE (P29365) Homoserine dehydrogenase (EC 1.1.1.3) (HDH)| Length = 434 Score = 29.3 bits (64), Expect = 5.5 Identities = 25/63 (39%), Positives = 31/63 (49%), Gaps = 2/63 (3%) Frame = -1 Query: 384 RNMVEMARRAGRQVRKNLSTTAHRPRP--DTHG*HLGADGVVDIEFAVIIACVALRCGGY 211 RN E+ARRAGR + + A RP P DT + AD + D+ I V GGY Sbjct: 24 RNAEEIARRAGRGI-EVAQIAARRPNPKCDTGATPITAD-IFDVACNPEIDVVVELIGGY 81 Query: 210 WLA 202 LA Sbjct: 82 TLA 84
>CWC25_ASPFU (Q4X1D7) Pre-mRNA-splicing factor cwc25| Length = 447 Score = 28.9 bits (63), Expect = 7.2 Identities = 13/34 (38%), Positives = 18/34 (52%) Frame = +2 Query: 35 RAHHGARRVHQAQRHHPRTHLHRGRPPRTPAAED 136 R+ H H++ RH R+H HR R P +P D Sbjct: 195 RSRHEDEDAHRSHRH--RSHRHRSRSPLSPDRSD 226
>Y2059_STRMU (Q8DRZ4) Hypothetical UPF0324 membrane protein SMU.2059c| Length = 341 Score = 28.9 bits (63), Expect = 7.2 Identities = 11/34 (32%), Positives = 19/34 (55%) Frame = -1 Query: 267 VDIEFAVIIACVALRCGGYWLACICPAVRRDGDE 166 +D+ A ++ + CGG +A P ++ DGDE Sbjct: 113 LDVNTATLVGVGSSICGGSAIAATAPVIQADGDE 146
>HRP_PLAFF (P04930) Small histidine-alanine-rich protein precursor (SHARP)| (Antigen 57) Length = 221 Score = 28.9 bits (63), Expect = 7.2 Identities = 23/84 (27%), Positives = 25/84 (29%), Gaps = 4/84 (4%) Frame = +2 Query: 2 AERAAHDAGGVRAHHGARRVHQAQRHHPRTHLHRGRPPRTPAAEDVIKSQRHXXXXXXXX 181 A A H A AHH A H A HH H A + H Sbjct: 57 AHHAHHVADAHHAHHAANAHHAANAHHAANAHHAANAHHAANAHHA--ANAHHAANAHHA 114 Query: 182 XXAGHM----HASQYPPQRNATHA 241 A H HA+ NA HA Sbjct: 115 ANAHHAANAHHAANAHHAANAHHA 138
>HRP2_PLAFA (P05228) Histidine-rich protein precursor (Clone PFHRP-III)| Length = 241 Score = 28.9 bits (63), Expect = 7.2 Identities = 23/84 (27%), Positives = 25/84 (29%), Gaps = 4/84 (4%) Frame = +2 Query: 2 AERAAHDAGGVRAHHGARRVHQAQRHHPRTHLHRGRPPRTPAAEDVIKSQRHXXXXXXXX 181 A A H A AHH A H A HH H A + H Sbjct: 66 AHHAHHVADAHHAHHAANAHHAANAHHAANAHHAANAHHAANAHHA--ANAHHAANAHHA 123 Query: 182 XXAGHM----HASQYPPQRNATHA 241 A H HA+ NA HA Sbjct: 124 ANAHHAANAHHAANAHHAANAHHA 147
>YBGH_ECOLI (P75742) Inner membrane transporter ybgH| Length = 493 Score = 28.5 bits (62), Expect = 9.4 Identities = 12/21 (57%), Positives = 15/21 (71%) Frame = +2 Query: 410 HVLLGPARIHSSILYLSYIVI 472 HV+LG + IH S LYLS +I Sbjct: 90 HVVLGASEIHPSFLYLSLAII 110
>NODU_RHIFR (Q01990) Nodulation protein U (EC 2.1.3.-)| Length = 581 Score = 28.5 bits (62), Expect = 9.4 Identities = 17/45 (37%), Positives = 22/45 (48%) Frame = +1 Query: 154 THDALIAVSTHGRAYAC*PVSTATQRNARNNYSELYIYDAVSAKM 288 THD IAV GR C + +RN + Y E+ DAV A + Sbjct: 33 THDGAIAVVEDGRLVFC---TEQEKRNNNSRYQEINNLDAVVAAL 74
>NODU_RHISN (P31957) Nodulation protein U (EC 2.1.3.-)| Length = 558 Score = 28.5 bits (62), Expect = 9.4 Identities = 17/45 (37%), Positives = 22/45 (48%) Frame = +1 Query: 154 THDALIAVSTHGRAYAC*PVSTATQRNARNNYSELYIYDAVSAKM 288 THD IAV GR C + +RN + Y E+ DAV A + Sbjct: 9 THDGAIAVVEDGRLVFC---TEQEKRNNNSRYQEINNLDAVVAAL 50 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 66,130,266 Number of Sequences: 219361 Number of extensions: 1242122 Number of successful extensions: 3932 Number of sequences better than 10.0: 24 Number of HSP's better than 10.0 without gapping: 3686 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3872 length of database: 80,573,946 effective HSP length: 103 effective length of database: 57,979,763 effective search space used: 3188886965 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
