ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name baak4f10
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 131 2e-27
2gb|AC133340.4| Oryza sativa chromosome 3 BAC clone OSJNBb0024J17... 131 2e-27
3dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 131 2e-27
4dbj|AK120304.1| Oryza sativa (japonica cultivar-group) cDNA clon... 131 2e-27
5dbj|AK098878.1| Oryza sativa (japonica cultivar-group) cDNA clon... 131 2e-27
6dbj|AK061719.1| Oryza sativa (japonica cultivar-group) cDNA clon... 131 2e-27
7gb|AF022740.1|AF022740 Oryza sativa glycolate oxidase (GOX) mRNA... 100 8e-18
8gb|AY108197.1| Zea mays PCO065133 mRNA sequence 86 1e-13
9ref|XM_476669.1| Oryza sativa (japonica cultivar-group), mRNA 72 2e-09
10ref|XM_506164.1| PREDICTED Oryza sativa (japonica cultivar-group... 72 2e-09
11dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 72 2e-09
12dbj|AP006163.4| Oryza sativa (japonica cultivar-group) genomic D... 72 2e-09
13dbj|AP005632.3| Oryza sativa (japonica cultivar-group) genomic D... 72 2e-09
14dbj|AK120929.1| Oryza sativa (japonica cultivar-group) cDNA clon... 72 2e-09
15dbj|AK103933.1| Oryza sativa (japonica cultivar-group) cDNA clon... 72 2e-09
16dbj|AK062189.1| Oryza sativa (japonica cultivar-group) cDNA clon... 72 2e-09
17gb|AY173074.1| Zantedeschia aethiopica glycolate oxidase (gox) m... 46 0.10
18dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome 44 0.41
19ref|XM_473942.1| Oryza sativa (japonica cultivar-group), predic... 42 1.6
20emb|AL606645.2|OSJN00079 Oryza sativa genomic DNA, chromosome 4,... 42 1.6
21dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.6
22dbj|AK068638.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 1.6
23dbj|AK060221.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 1.6
24gb|CP000009.1| Gluconobacter oxydans 621H, complete genome 42 1.6
25gb|AC125735.1| Leishmania major strain Friedlin chromosome 3, co... 40 6.4
26gb|AC133710.4| Oryza sativa (japonica cultivar-group) chromosome... 40 6.4
27gb|AY248747.1| Xanthomonas campestris pv. vesicatoria OpgH (opgH... 40 6.4
28gb|AC136491.4| Oryza sativa (japonica cultivar-group) chromosome... 40 6.4
29emb|AM039952.1| Xanthomonas campestris pv. vesicatoria complete ... 40 6.4
30emb|BX897673.1| Neurospora crassa DNA linkage group III BAC clon... 40 6.4
31emb|BX957246.7| Zebrafish DNA sequence from clone CH211-89F7 in ... 40 6.4
32dbj|AP008229.1| Xanthomonas oryzae pv. oryzae MAFF 311018 DNA, c... 40 6.4
33gb|AC009371.7| Drosophila melanogaster 3L BAC RP98-44K7 (Roswell... 40 6.4
34gb|AE011690.1| Xanthomonas axonopodis pv. citri str. 306, secti... 40 6.4
35dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.4
36dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.4
37gb|AC005639.2|AC005639 Drosophila melanogaster, chromosome 2R, r... 40 6.4
38dbj|AK110285.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 6.4
39gb|AE003523.3| Drosophila melanogaster chromosome 3L, section 62... 40 6.4
40gb|AE003461.3| Drosophila melanogaster chromosome 2R, section 69... 40 6.4
41gb|AE013598.1| Xanthomonas oryzae pv. oryzae KACC10331, complete... 40 6.4
42gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 40 6.4
43gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 40 6.4
44emb|AL935070.3|CNS08CCM Oryza sativa chromosome 12, . BAC OSJNBa... 40 6.4 
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score =  131 bits (66), Expect = 2e-27
 Identities = 102/114 (89%)
 Strand = Plus / Plus

                                                                            
Query: 4        ggaacgtgctgcgcatgatgcgggaggagttcgagctcaccatggcgctcggcgggtgca 63
                ||||||||||||| |||||||||||||||||||||||||||||||||||| |||| ||||
Sbjct: 32328031 ggaacgtgctgcggatgatgcgggaggagttcgagctcaccatggcgctcagcggatgca 32328090

                                                                      
Query: 64       ccaagctcagcgacatcacccgcgaacacatcttcaccgagggcgaccgcctcg 117
                ||  ||||  ||||||||||||||  ||||||| |||||| | |||||||||||
Sbjct: 32328091 cctcgctcgccgacatcacccgcgcccacatctacaccgacgccgaccgcctcg 32328144
to top
>gb|AC133340.4| Oryza sativa chromosome 3 BAC clone OSJNBb0024J17, complete sequence
          Length = 102751

 Score =  131 bits (66), Expect = 2e-27
 Identities = 102/114 (89%)
 Strand = Plus / Plus

                                                                         
Query: 4     ggaacgtgctgcgcatgatgcgggaggagttcgagctcaccatggcgctcggcgggtgca 63
             ||||||||||||| |||||||||||||||||||||||||||||||||||| |||| ||||
Sbjct: 61798 ggaacgtgctgcggatgatgcgggaggagttcgagctcaccatggcgctcagcggatgca 61857

                                                                   
Query: 64    ccaagctcagcgacatcacccgcgaacacatcttcaccgagggcgaccgcctcg 117
             ||  ||||  ||||||||||||||  ||||||| |||||| | |||||||||||
Sbjct: 61858 cctcgctcgccgacatcacccgcgcccacatctacaccgacgccgaccgcctcg 61911
to top
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score =  131 bits (66), Expect = 2e-27
 Identities = 102/114 (89%)
 Strand = Plus / Plus

                                                                            
Query: 4        ggaacgtgctgcgcatgatgcgggaggagttcgagctcaccatggcgctcggcgggtgca 63
                ||||||||||||| |||||||||||||||||||||||||||||||||||| |||| ||||
Sbjct: 32418541 ggaacgtgctgcggatgatgcgggaggagttcgagctcaccatggcgctcagcggatgca 32418600

                                                                      
Query: 64       ccaagctcagcgacatcacccgcgaacacatcttcaccgagggcgaccgcctcg 117
                ||  ||||  ||||||||||||||  ||||||| |||||| | |||||||||||
Sbjct: 32418601 cctcgctcgccgacatcacccgcgcccacatctacaccgacgccgaccgcctcg 32418654
to top
>dbj|AK120304.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013052N09, full
            insert sequence
          Length = 1526

 Score =  131 bits (66), Expect = 2e-27
 Identities = 102/114 (89%)
 Strand = Plus / Plus

                                                                        
Query: 4    ggaacgtgctgcgcatgatgcgggaggagttcgagctcaccatggcgctcggcgggtgca 63
            ||||||||||||| |||||||||||||||||||||||||||||||||||| |||| ||||
Sbjct: 1049 ggaacgtgctgcggatgatgcgggaggagttcgagctcaccatggcgctcagcggatgca 1108

                                                                  
Query: 64   ccaagctcagcgacatcacccgcgaacacatcttcaccgagggcgaccgcctcg 117
            ||  ||||  ||||||||||||||  ||||||| |||||| | |||||||||||
Sbjct: 1109 cctcgctcgccgacatcacccgcgcccacatctacaccgacgccgaccgcctcg 1162
to top
>dbj|AK098878.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013001E15, full
            insert sequence
          Length = 1522

 Score =  131 bits (66), Expect = 2e-27
 Identities = 102/114 (89%)
 Strand = Plus / Plus

                                                                        
Query: 4    ggaacgtgctgcgcatgatgcgggaggagttcgagctcaccatggcgctcggcgggtgca 63
            ||||||||||||| |||||||||||||||||||||||||||||||||||| |||| ||||
Sbjct: 1045 ggaacgtgctgcggatgatgcgggaggagttcgagctcaccatggcgctcagcggatgca 1104

                                                                  
Query: 64   ccaagctcagcgacatcacccgcgaacacatcttcaccgagggcgaccgcctcg 117
            ||  ||||  ||||||||||||||  ||||||| |||||| | |||||||||||
Sbjct: 1105 cctcgctcgccgacatcacccgcgcccacatctacaccgacgccgaccgcctcg 1158
to top
>dbj|AK061719.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-037-H12, full
            insert sequence
          Length = 1586

 Score =  131 bits (66), Expect = 2e-27
 Identities = 102/114 (89%)
 Strand = Plus / Plus

                                                                        
Query: 4    ggaacgtgctgcgcatgatgcgggaggagttcgagctcaccatggcgctcggcgggtgca 63
            ||||||||||||| |||||||||||||||||||||||||||||||||||| |||| ||||
Sbjct: 1109 ggaacgtgctgcggatgatgcgggaggagttcgagctcaccatggcgctcagcggatgca 1168

                                                                  
Query: 64   ccaagctcagcgacatcacccgcgaacacatcttcaccgagggcgaccgcctcg 117
            ||  ||||  ||||||||||||||  ||||||| |||||| | |||||||||||
Sbjct: 1169 cctcgctcgccgacatcacccgcgcccacatctacaccgacgccgaccgcctcg 1222
to top
>gb|AF022740.1|AF022740 Oryza sativa glycolate oxidase (GOX) mRNA, complete cds
          Length = 1473

 Score = 99.6 bits (50), Expect = 8e-18
 Identities = 98/114 (85%)
 Strand = Plus / Plus

                                                                        
Query: 4    ggaacgtgctgcgcatgatgcgggaggagttcgagctcaccatggcgctcggcgggtgca 63
            ||||| ||||||| ||||||||||||||||||||||||||||||||| || |||| ||||
Sbjct: 1015 ggaacctgctgcggatgatgcgggaggagttcgagctcaccatggcgttcagcggatgca 1074

                                                                  
Query: 64   ccaagctcagcgacatcacccgcgaacacatcttcaccgagggcgaccgcctcg 117
            ||  ||||  ||||||||||||||  ||||||| ||| || | ||| |||||||
Sbjct: 1075 cctcgctcgccgacatcacccgcgcccacatctacacggacgccgaacgcctcg 1128
to top
>gb|AY108197.1| Zea mays PCO065133 mRNA sequence
          Length = 1667

 Score = 85.7 bits (43), Expect = 1e-13
 Identities = 85/99 (85%)
 Strand = Plus / Plus

                                                                        
Query: 6    aacgtgctgcgcatgatgcgggaggagttcgagctcaccatggcgctcggcgggtgcacc 65
            ||||| ||||||||| ||||||| |||||||||||||||||||||||| |||| ||||||
Sbjct: 1190 aacgtcctgcgcatgctgcgggacgagttcgagctcaccatggcgctcagcggctgcacc 1249

                                                   
Query: 66   aagctcagcgacatcacccgcgaacacatcttcaccgag 104
               |||  ||| ||||||||| | |||||| ||||||||
Sbjct: 1250 tccctcgccgaaatcacccgcaagcacatcatcaccgag 1288
to top
>ref|XM_476669.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1439

 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 90/108 (83%)
 Strand = Plus / Plus

                                                                        
Query: 3    cggaacgtgctgcgcatgatgcgggaggagttcgagctcaccatggcgctcggcgggtgc 62
            |||||||||||||  ||| | || || |||||||||||||||||||||||| |||| |||
Sbjct: 1039 cggaacgtgctgcagatgctccgcgacgagttcgagctcaccatggcgctcagcggctgc 1098

                                                            
Query: 63   accaagctcagcgacatcacccgcgaacacatcttcaccgagggcgac 110
            |||   |||  ||||||||||||| | ||| || ||||||||| ||||
Sbjct: 1099 acctccctcgccgacatcacccgcaaccacgtcatcaccgaggccgac 1146
to top
>ref|XM_506164.1| PREDICTED Oryza sativa (japonica cultivar-group), B1364A02.11-1 mRNA
          Length = 1501

 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 90/108 (83%)
 Strand = Plus / Plus

                                                                        
Query: 3    cggaacgtgctgcgcatgatgcgggaggagttcgagctcaccatggcgctcggcgggtgc 62
            |||||||||||||  ||| | || || |||||||||||||||||||||||| |||| |||
Sbjct: 1080 cggaacgtgctgcagatgctccgcgacgagttcgagctcaccatggcgctcagcggctgc 1139

                                                            
Query: 63   accaagctcagcgacatcacccgcgaacacatcttcaccgagggcgac 110
            |||   |||  ||||||||||||| | ||| || ||||||||| ||||
Sbjct: 1140 acctccctcgccgacatcacccgcaaccacgtcatcaccgaggccgac 1187
to top
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
               sequence
          Length = 29644043

 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 90/108 (83%)
 Strand = Plus / Plus

                                                                           
Query: 3       cggaacgtgctgcgcatgatgcgggaggagttcgagctcaccatggcgctcggcgggtgc 62
               |||||||||||||  ||| | || || |||||||||||||||||||||||| |||| |||
Sbjct: 2833074 cggaacgtgctgcagatgctccgcgacgagttcgagctcaccatggcgctcagcggctgc 2833133

                                                               
Query: 63      accaagctcagcgacatcacccgcgaacacatcttcaccgagggcgac 110
               |||   |||  ||||||||||||| | ||| || ||||||||| ||||
Sbjct: 2833134 acctccctcgccgacatcacccgcaaccacgtcatcaccgaggccgac 2833181
to top
>dbj|AP006163.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
              clone:B1364A02
          Length = 137933

 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 90/108 (83%)
 Strand = Plus / Plus

                                                                          
Query: 3      cggaacgtgctgcgcatgatgcgggaggagttcgagctcaccatggcgctcggcgggtgc 62
              |||||||||||||  ||| | || || |||||||||||||||||||||||| |||| |||
Sbjct: 136635 cggaacgtgctgcagatgctccgcgacgagttcgagctcaccatggcgctcagcggctgc 136694

                                                              
Query: 63     accaagctcagcgacatcacccgcgaacacatcttcaccgagggcgac 110
              |||   |||  ||||||||||||| | ||| || ||||||||| ||||
Sbjct: 136695 acctccctcgccgacatcacccgcaaccacgtcatcaccgaggccgac 136742
to top
>dbj|AP005632.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
            clone:OSJNBb0050B07
          Length = 142134

 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 90/108 (83%)
 Strand = Plus / Plus

                                                                        
Query: 3    cggaacgtgctgcgcatgatgcgggaggagttcgagctcaccatggcgctcggcgggtgc 62
            |||||||||||||  ||| | || || |||||||||||||||||||||||| |||| |||
Sbjct: 3361 cggaacgtgctgcagatgctccgcgacgagttcgagctcaccatggcgctcagcggctgc 3420

                                                            
Query: 63   accaagctcagcgacatcacccgcgaacacatcttcaccgagggcgac 110
            |||   |||  ||||||||||||| | ||| || ||||||||| ||||
Sbjct: 3421 acctccctcgccgacatcacccgcaaccacgtcatcaccgaggccgac 3468
to top
>dbj|AK120929.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023036A14, full
            insert sequence
          Length = 1738

 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 90/108 (83%)
 Strand = Plus / Plus

                                                                        
Query: 3    cggaacgtgctgcgcatgatgcgggaggagttcgagctcaccatggcgctcggcgggtgc 62
            |||||||||||||  ||| | || || |||||||||||||||||||||||| |||| |||
Sbjct: 1338 cggaacgtgctgcagatgctccgcgacgagttcgagctcaccatggcgctcagcggctgc 1397

                                                            
Query: 63   accaagctcagcgacatcacccgcgaacacatcttcaccgagggcgac 110
            |||   |||  ||||||||||||| | ||| || ||||||||| ||||
Sbjct: 1398 acctccctcgccgacatcacccgcaaccacgtcatcaccgaggccgac 1445
to top
>dbj|AK103933.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-013-E11, full
            insert sequence
          Length = 1439

 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 90/108 (83%)
 Strand = Plus / Plus

                                                                        
Query: 3    cggaacgtgctgcgcatgatgcgggaggagttcgagctcaccatggcgctcggcgggtgc 62
            |||||||||||||  ||| | || || |||||||||||||||||||||||| |||| |||
Sbjct: 1039 cggaacgtgctgcagatgctccgcgacgagttcgagctcaccatggcgctcagcggctgc 1098

                                                            
Query: 63   accaagctcagcgacatcacccgcgaacacatcttcaccgagggcgac 110
            |||   |||  ||||||||||||| | ||| || ||||||||| ||||
Sbjct: 1099 acctccctcgccgacatcacccgcaaccacgtcatcaccgaggccgac 1146
to top
>dbj|AK062189.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-046-E08, full
            insert sequence
          Length = 1501

 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 90/108 (83%)
 Strand = Plus / Plus

                                                                        
Query: 3    cggaacgtgctgcgcatgatgcgggaggagttcgagctcaccatggcgctcggcgggtgc 62
            |||||||||||||  ||| | || || |||||||||||||||||||||||| |||| |||
Sbjct: 1080 cggaacgtgctgcagatgctccgcgacgagttcgagctcaccatggcgctcagcggctgc 1139

                                                            
Query: 63   accaagctcagcgacatcacccgcgaacacatcttcaccgagggcgac 110
            |||   |||  ||||||||||||| | ||| || ||||||||| ||||
Sbjct: 1140 acctccctcgccgacatcacccgcaaccacgtcatcaccgaggccgac 1187
to top
>gb|AY173074.1| Zantedeschia aethiopica glycolate oxidase (gox) mRNA, complete cds
          Length = 1486

 Score = 46.1 bits (23), Expect = 0.10
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                   
Query: 27   gaggagttcgagctcaccatggc 49
            |||||||||||||||||||||||
Sbjct: 1093 gaggagttcgagctcaccatggc 1115
to top
>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome
          Length = 6021225

 Score = 44.1 bits (22), Expect = 0.41
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 106    gcgaccgcctcggacgcccgct 127
              ||||||||||||||||||||||
Sbjct: 277800 gcgaccgcctcggacgcccgct 277779



 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 114     ctcggacgcccgctgccgag 133
               ||||||||||||||||||||
Sbjct: 5814697 ctcggacgcccgctgccgag 5814716
to top
>ref|XM_473942.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1104

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                         
Query: 36   gagctcaccatggcgctcggcgggtgcac 64
            |||||||||||||||||| |||| |||||
Sbjct: 1006 gagctcaccatggcgctcagcggatgcac 1034
to top
>emb|AL606645.2|OSJN00079 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0053K19,
             complete sequence
          Length = 187601

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                          
Query: 36    gagctcaccatggcgctcggcgggtgcac 64
             |||||||||||||||||| |||| |||||
Sbjct: 59332 gagctcaccatggcgctcagcggatgcac 59360
to top
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                             
Query: 36       gagctcaccatggcgctcggcgggtgcac 64
                |||||||||||||||||| |||| |||||
Sbjct: 31726062 gagctcaccatggcgctcagcggatgcac 31726090
to top
>dbj|AK068638.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013156O03, full
            insert sequence
          Length = 1435

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                         
Query: 36   gagctcaccatggcgctcggcgggtgcac 64
            |||||||||||||||||| |||| |||||
Sbjct: 1075 gagctcaccatggcgctcagcggatgcac 1103
to top
>dbj|AK060221.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-002-F07, full
            insert sequence
          Length = 1427

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                         
Query: 36   gagctcaccatggcgctcggcgggtgcac 64
            |||||||||||||||||| |||| |||||
Sbjct: 1079 gagctcaccatggcgctcagcggatgcac 1107
to top
>gb|CP000009.1| Gluconobacter oxydans 621H, complete genome
          Length = 2702173

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                        
Query: 12      ctgcgcatgatgcgggaggagttcg 36
               |||||||||||||||||||| ||||
Sbjct: 2682551 ctgcgcatgatgcgggaggatttcg 2682575
to top
>gb|AC125735.1| Leishmania major strain Friedlin chromosome 3, complete sequence
          Length = 384518

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                          
Query: 3      cggaacgtgctgcgcatgatgcgggagg 30
              ||||| |||| |||||||||||||||||
Sbjct: 284056 cggaaagtgcagcgcatgatgcgggagg 284029
to top
>gb|AC133710.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone
             OSJNBa0002A19, complete sequence
          Length = 139052

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 361   tctcgccatttccaccatatttcgcacc 388
             |||| |||||||||||| ||||||||||
Sbjct: 29956 tctctccatttccaccaaatttcgcacc 29983
to top
>gb|AY248747.1| Xanthomonas campestris pv. vesicatoria OpgH (opgH) gene, complete cds
          Length = 3005

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                        
Query: 68   gctcagcgacatcacccgcgaacacatc 95
            ||||||||||| ||||||||| ||||||
Sbjct: 1024 gctcagcgacaccacccgcgagcacatc 1051
to top
>gb|AC136491.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0062E06,
              complete sequence
          Length = 158842

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                          
Query: 361    tctcgccatttccaccatatttcgcacc 388
              |||| |||||||||||| ||||||||||
Sbjct: 158415 tctctccatttccaccaaatttcgcacc 158442
to top
>emb|AM039952.1| Xanthomonas campestris pv. vesicatoria complete genome
          Length = 5178466

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                          
Query: 68     gctcagcgacatcacccgcgaacacatc 95
              ||||||||||| ||||||||| ||||||
Sbjct: 766298 gctcagcgacaccacccgcgagcacatc 766325
to top
>emb|BX897673.1| Neurospora crassa DNA linkage group III BAC clone B13M15
          Length = 63598

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 219   cgcaacgcaacgcaacgcac 238
             ||||||||||||||||||||
Sbjct: 42560 cgcaacgcaacgcaacgcac 42541
to top
>emb|BX957246.7| Zebrafish DNA sequence from clone CH211-89F7 in linkage group 5, complete
              sequence
          Length = 186135

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 395    accatattgtatttccatgt 414
              ||||||||||||||||||||
Sbjct: 166688 accatattgtatttccatgt 166707
to top
>dbj|AP008229.1| Xanthomonas oryzae pv. oryzae MAFF 311018 DNA, complete genome
          Length = 4940217

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                           
Query: 68      gctcagcgacatcacccgcgaacacatc 95
               ||||||||||| ||||||||| ||||||
Sbjct: 4277355 gctcagcgacaccacccgcgagcacatc 4277328
to top
>gb|AC009371.7| Drosophila melanogaster 3L BAC RP98-44K7 (Roswell Park Cancer Institute
             Drosophila BAC Library) complete sequence
          Length = 174645

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 219   cgcaacgcaacgcaacgcac 238
             ||||||||||||||||||||
Sbjct: 26540 cgcaacgcaacgcaacgcac 26559
to top
>gb|AE011690.1| Xanthomonas axonopodis pv. citri str. 306,  section 68 of 469 of the
            complete genome
          Length = 11141

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                        
Query: 68   gctcagcgacatcacccgcgaacacatc 95
            ||||||||||| ||||||||| ||||||
Sbjct: 3617 gctcagcgacaccacccgcgagcacatc 3644
to top
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
                sequence
          Length = 27566993

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 446      attctgtatttatcatacat 465
                ||||||||||||||||||||
Sbjct: 22849562 attctgtatttatcatacat 22849581
to top
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
                sequence
          Length = 28386948

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                            
Query: 361      tctcgccatttccaccatatttcgcacc 388
                |||| |||||||||||| ||||||||||
Sbjct: 17868764 tctctccatttccaccaaatttcgcacc 17868791
to top
>gb|AC005639.2|AC005639 Drosophila melanogaster, chromosome 2R, region 59E3-59F4, BAC clone
             BACR48M01, complete sequence
          Length = 188272

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 219   cgcaacgcaacgcaacgcac 238
             ||||||||||||||||||||
Sbjct: 77484 cgcaacgcaacgcaacgcac 77465
to top
>dbj|AK110285.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-163-E12, full
           insert sequence
          Length = 2833

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 219 cgcaacgcaacgcaacgcac 238
           ||||||||||||||||||||
Sbjct: 878 cgcaacgcaacgcaacgcac 859
to top
>gb|AE003523.3| Drosophila melanogaster chromosome 3L, section 62 of 83 of the
            complete sequence
          Length = 290640

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 219  cgcaacgcaacgcaacgcac 238
            ||||||||||||||||||||
Sbjct: 5008 cgcaacgcaacgcaacgcac 5027
to top
>gb|AE003461.3| Drosophila melanogaster chromosome 2R, section 69 of 73 of the complete
              sequence
          Length = 598988

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 219    cgcaacgcaacgcaacgcac 238
              ||||||||||||||||||||
Sbjct: 111024 cgcaacgcaacgcaacgcac 111005
to top
>gb|AE013598.1| Xanthomonas oryzae pv. oryzae KACC10331, complete genome
          Length = 4941439

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                           
Query: 68      gctcagcgacatcacccgcgaacacatc 95
               ||||||||||| ||||||||| ||||||
Sbjct: 4284145 gctcagcgacaccacccgcgagcacatc 4284118
to top
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                            
Query: 361      tctcgccatttccaccatatttcgcacc 388
                |||| |||||||||||| ||||||||||
Sbjct: 17963081 tctctccatttccaccaaatttcgcacc 17963108
to top
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 446      attctgtatttatcatacat 465
                ||||||||||||||||||||
Sbjct: 22777753 attctgtatttatcatacat 22777772
to top
>emb|AL935070.3|CNS08CCM Oryza sativa chromosome 12, . BAC OSJNBa0040P10 of library OSJNBa from
              chromosome 12 of cultivar Nipponbare of ssp. japonica of
              Oryza sativa (rice), complete sequence
          Length = 148705

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 446    attctgtatttatcatacat 465
              ||||||||||||||||||||
Sbjct: 107282 attctgtatttatcatacat 107263


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,668,657
Number of Sequences: 3902068
Number of extensions: 2668657
Number of successful extensions: 45696
Number of sequences better than 10.0: 44
Number of HSP's better than 10.0 without gapping: 45
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 45169
Number of HSP's gapped (non-prelim): 513
length of query: 477
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 455
effective length of database: 17,147,199,772
effective search space: 7801975896260
effective search space used: 7801975896260
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top