ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | baak4f08 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_463527.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 636 Score = 299 bits (151), Expect = 4e-78 Identities = 228/254 (89%) Strand = Plus / Plus Query: 7 cggtggcgaggtggtacttcccgccggnagtggactacaggctcagcctgctgcacccgg 66 ||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||| Sbjct: 383 cggtggcgaggtggtacttcccgccggaggtggactacaggctcagcttgctgcacccgg 442 Query: 67 acgccaaagggctcatcgtctgggtctacgaggccaaggttctgtccaaggccgagctgc 126 ||||||| || ||| ||||||||||| || ||||||||||| |||||||||||||||| Sbjct: 443 acgccaagggcctcgtcgtctgggtcatggaagccaaggttctctccaaggccgagctgc 502 Query: 127 agttcctggccatgctccccgacctccgccccaaagtcagggtgatcgcggaatgcggca 186 ||||||| ||||| ||||| ||| |||||||||||||||||||||||||||||||||||| Sbjct: 503 agttcctcgccattctccctgacatccgccccaaagtcagggtgatcgcggaatgcggca 562 Query: 187 actggagaaaattcatctggaaaccgctgaagcaaatatcgggcctcgagcctgacccgg 246 ||||||| ||||| | ||||| |||||||||||||| ||||||| ||||| ||||| | Sbjct: 563 actggaggaaatttgtgtggaagccgctgaagcaaatcgcgggccttgagccggaccctg 622 Query: 247 acgccgaggaatga 260 |||| ||||||||| Sbjct: 623 acgcagaggaatga 636
>gb|AY108360.1| Zea mays PCO146323 mRNA sequence Length = 868 Score = 285 bits (144), Expect = 6e-74 Identities = 228/255 (89%), Gaps = 1/255 (0%) Strand = Plus / Plus Query: 7 cggtggcgaggtggtacttcccgccggnagtggactacaggctcagcctgctgcacccgg 66 |||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct: 451 cggtggcgcggtggtacttcccgccggaggtggactacaggctcagcctgctgcacccgg 510 Query: 67 acgccaaagggctcatcgtctgggtctacgaggccaaggttctgtccaaggccgagctgc 126 |||||||||| ||| |||||||| || ||| |||||||||||||||||||| ||||||| Sbjct: 511 acgccaaaggcctcgtcgtctggatcatcgaagccaaggttctgtccaaggctgagctgc 570 Query: 127 agttcctggccatgctccccgacctccgccccaaagtcagggtgatcgcggaatgcgg-c 185 ||||||||||||||||||| ||| ||||||||||||||||||||||||| |||||||| | Sbjct: 571 agttcctggccatgctcccggacatccgccccaaagtcagggtgatcgcagaatgcggcc 630 Query: 186 aactggagaaaattcatctggaaaccgctgaagcaaatatcgggcctcgagcctgacccg 245 |||||||||| || | ||||| || |||||||| || | ||||||||||| |||||| Sbjct: 631 aactggagaagctttgtttggaagccactgaagcagatcgcaggcctcgagccggacccg 690 Query: 246 gacgccgaggaatga 260 ||||| ||||||||| Sbjct: 691 gacgcggaggaatga 705
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 137 bits (69), Expect = 3e-29 Identities = 84/89 (94%) Strand = Plus / Minus Query: 103 aggttctgtccaaggccgagctgcagttcctggccatgctccccgacctccgccccaaag 162 ||||||| ||||||||||||||||||||||| ||||| ||||| ||| |||||||||||| Sbjct: 38300256 aggttctctccaaggccgagctgcagttcctcgccattctccctgacatccgccccaaag 38300197 Query: 163 tcagggtgatcgcggaatgcggcaactgg 191 ||||||||||||||||||||||||||||| Sbjct: 38300196 tcagggtgatcgcggaatgcggcaactgg 38300168 Score = 125 bits (63), Expect = 1e-25 Identities = 80/86 (93%) Strand = Plus / Minus Query: 7 cggtggcgaggtggtacttcccgccggnagtggactacaggctcagcctgctgcacccgg 66 ||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||| Sbjct: 38300465 cggtggcgaggtggtacttcccgccggaggtggactacaggctcagcttgctgcacccgg 38300406 Query: 67 acgccaaagggctcatcgtctgggtc 92 ||||||| || ||| ||||||||||| Sbjct: 38300405 acgccaagggcctcgtcgtctgggtc 38300380 Score = 58.0 bits (29), Expect = 2e-05 Identities = 50/57 (87%) Strand = Plus / Minus Query: 204 tggaaaccgctgaagcaaatatcgggcctcgagcctgacccggacgccgaggaatga 260 ||||| |||||||||||||| ||||||| ||||| ||||| ||||| ||||||||| Sbjct: 38300071 tggaagccgctgaagcaaatcgcgggccttgagccggaccctgacgcagaggaatga 38300015
>dbj|AP003561.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:B1065E10 Length = 183580 Score = 137 bits (69), Expect = 3e-29 Identities = 84/89 (94%) Strand = Plus / Minus Query: 103 aggttctgtccaaggccgagctgcagttcctggccatgctccccgacctccgccccaaag 162 ||||||| ||||||||||||||||||||||| ||||| ||||| ||| |||||||||||| Sbjct: 61081 aggttctctccaaggccgagctgcagttcctcgccattctccctgacatccgccccaaag 61022 Query: 163 tcagggtgatcgcggaatgcggcaactgg 191 ||||||||||||||||||||||||||||| Sbjct: 61021 tcagggtgatcgcggaatgcggcaactgg 60993 Score = 125 bits (63), Expect = 1e-25 Identities = 80/86 (93%) Strand = Plus / Minus Query: 7 cggtggcgaggtggtacttcccgccggnagtggactacaggctcagcctgctgcacccgg 66 ||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||| Sbjct: 61290 cggtggcgaggtggtacttcccgccggaggtggactacaggctcagcttgctgcacccgg 61231 Query: 67 acgccaaagggctcatcgtctgggtc 92 ||||||| || ||| ||||||||||| Sbjct: 61230 acgccaagggcctcgtcgtctgggtc 61205 Score = 58.0 bits (29), Expect = 2e-05 Identities = 50/57 (87%) Strand = Plus / Minus Query: 204 tggaaaccgctgaagcaaatatcgggcctcgagcctgacccggacgccgaggaatga 260 ||||| |||||||||||||| ||||||| ||||| ||||| ||||| ||||||||| Sbjct: 60896 tggaagccgctgaagcaaatcgcgggccttgagccggaccctgacgcagaggaatga 60840
>emb|CR555306.1| Azoarcus sp. EbN1 complete genome Length = 4296230 Score = 44.1 bits (22), Expect = 0.37 Identities = 22/22 (100%) Strand = Plus / Plus Query: 50 cagcctgctgcacccggacgcc 71 |||||||||||||||||||||| Sbjct: 4176143 cagcctgctgcacccggacgcc 4176164
>emb|CR293512.7| Zebrafish DNA sequence from clone DKEY-27M20 in linkage group 23, complete sequence Length = 127255 Score = 44.1 bits (22), Expect = 0.37 Identities = 22/22 (100%) Strand = Plus / Plus Query: 327 tcttttttgtgtactactaaag 348 |||||||||||||||||||||| Sbjct: 46732 tcttttttgtgtactactaaag 46753
>emb|BX322614.3| Zebrafish DNA sequence from clone CH211-215G1 in linkage group 16, complete sequence Length = 199783 Score = 44.1 bits (22), Expect = 0.37 Identities = 25/26 (96%) Strand = Plus / Minus Query: 309 actccattttcagcttcttctttttt 334 |||||||||||||| ||||||||||| Sbjct: 7350 actccattttcagcatcttctttttt 7325
>gb|AC107274.11| Rattus norvegicus 18 BAC CH230-207M17 (Children's Hospital Oakland Research Institute) complete sequence Length = 217066 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 314 attttcagcttcttctttttt 334 ||||||||||||||||||||| Sbjct: 63015 attttcagcttcttctttttt 62995
>gb|AC114825.4| Mus musculus BAC clone RP24-104P22 from chromosome 3, complete sequence Length = 202237 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 311 tccattttcagcttcttcttt 331 ||||||||||||||||||||| Sbjct: 193920 tccattttcagcttcttcttt 193940
>gb|AC124542.4| Mus musculus BAC clone RP23-259B10 from 12, complete sequence Length = 179046 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 191 gagaaaattcatctggaaacc 211 ||||||||||||||||||||| Sbjct: 43959 gagaaaattcatctggaaacc 43939
>gb|AC160933.3| Mus musculus BAC clone RP24-172H5 from chromosome 3, complete sequence Length = 158302 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 311 tccattttcagcttcttcttt 331 ||||||||||||||||||||| Sbjct: 84554 tccattttcagcttcttcttt 84574
>emb|AL590076.4| Human DNA sequence from clone RP11-408K19 on chromosome 13 Contains the gene for TPTE and PTEN homologous inositol lipid phosphatase (TPIP) and a cytochrome c (HCS) pseudogene, complete sequence Length = 119330 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 357 tgatgtacatacgtatacatt 377 ||||||||||||||||||||| Sbjct: 41150 tgatgtacatacgtatacatt 41130
>gb|BC017708.1| Homo sapiens ubiquitin-conjugating enzyme E2Q (putative) 2, mRNA (cDNA clone MGC:21212 IMAGE:3907760), complete cds Length = 2939 Score = 40.1 bits (20), Expect = 5.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 113 caaggccgagctgcagttcctggc 136 ||||||||||||| |||||||||| Sbjct: 226 caaggccgagctgaagttcctggc 249
>ref|XM_417385.1| PREDICTED: Gallus gallus similar to Nuclear receptor coactivator 3 (NCoA-3) (Thyroid hormone receptor activator molecule 1) (TRAM-1) (ACTR) (Receptor-associated coactivator 3) (RAC-3) (Amplified in breast cancer-1 protein) (AIB-1) (Steroid receptor coactivator protein 3) (... (LOC419208), mRNA Length = 4257 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 130 tcctggccatgctccccgac 149 |||||||||||||||||||| Sbjct: 4051 tcctggccatgctccccgac 4032
>ref|NM_180600.1| Mus musculus ubiquitin-conjugating enzyme E2Q (putative) 2 (Ube2q2), mRNA Length = 2933 Score = 40.1 bits (20), Expect = 5.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 113 caaggccgagctgcagttcctggc 136 ||||||||||||| |||||||||| Sbjct: 277 caaggccgagctgaagttcctggc 300
>gb|AC024857.2| Caenorhabditis elegans cosmid Y71G12A, complete sequence Length = 38967 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 314 attttcagcttcttcttttt 333 |||||||||||||||||||| Sbjct: 32873 attttcagcttcttcttttt 32854
>emb|CR940311.11| M.truncatula DNA sequence from clone MTH2-17E17 on chromosome 3, complete sequence Length = 122868 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 311 tccattttcagcttcttctt 330 |||||||||||||||||||| Sbjct: 1386 tccattttcagcttcttctt 1405
>emb|AL357073.19| Human DNA sequence from clone RP11-231K24 on chromosome 9 Contains the BARX1 gene for BarH-like homeobox 1, a novel gene and three CpG islands, complete sequence Length = 103667 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 121 agctgcagttcctggccatg 140 |||||||||||||||||||| Sbjct: 11418 agctgcagttcctggccatg 11399
>gb|CP000090.1| Ralstonia eutropha JMP134 chromosome 1, complete sequence Length = 3806533 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 115 aggccgagctgcagttcctg 134 |||||||||||||||||||| Sbjct: 1836509 aggccgagctgcagttcctg 1836490
>emb|AL132868.24|HSA262P20 Human DNA sequence from clone RP11-262P20 on chromosome 4, complete sequence Length = 193444 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 140 gctccccgacctccgcccca 159 |||||||||||||||||||| Sbjct: 10762 gctccccgacctccgcccca 10743
>gb|AC163411.3| Mus musculus chromosome 3, clone RP24-242E11, complete sequence Length = 144476 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 190 ggagaaaattcatctggaaa 209 |||||||||||||||||||| Sbjct: 66080 ggagaaaattcatctggaaa 66099
>emb|CR382126.1| Kluyveromyces lactis strain NRRL Y-1140 chromosome F of strain NRRL Y-1140 of Kluyveromyces lactis Length = 2602197 Score = 40.1 bits (20), Expect = 5.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 311 tccattttcagcttcttctttttt 334 ||||||||||||||||| |||||| Sbjct: 1962213 tccattttcagcttcttgtttttt 1962236
>emb|AL033497.1|CAC49C10 C.albicans cosmid Ca49C10 Length = 37825 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 315 ttttcagcttcttctttttt 334 |||||||||||||||||||| Sbjct: 37499 ttttcagcttcttctttttt 37518
>emb|BX571680.7| Zebrafish DNA sequence from clone DKEY-30L20 in linkage group 7, complete sequence Length = 145338 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 315 ttttcagcttcttctttttt 334 |||||||||||||||||||| Sbjct: 122428 ttttcagcttcttctttttt 122447
>emb|BX511068.5| Zebrafish DNA sequence from clone RP71-56H12 in linkage group 8, complete sequence Length = 108031 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 315 ttttcagcttcttctttttt 334 |||||||||||||||||||| Sbjct: 71452 ttttcagcttcttctttttt 71433
>emb|AL832429.1|HSM803737 Homo sapiens mRNA; cDNA DKFZp762C143 (from clone DKFZp762C143) Length = 2969 Score = 40.1 bits (20), Expect = 5.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 113 caaggccgagctgcagttcctggc 136 ||||||||||||| |||||||||| Sbjct: 224 caaggccgagctgaagttcctggc 247
>gb|AE005967.1| Caulobacter crescentus CB15 section 293 of 359 of the complete genome Length = 10677 Score = 40.1 bits (20), Expect = 5.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 46 ggctcagcctgctgcacccggacg 69 |||||||||||||||| ||||||| Sbjct: 9671 ggctcagcctgctgcatccggacg 9648
>dbj|AK022262.1| Homo sapiens cDNA FLJ12200 fis, clone MAMMA1000883 Length = 2219 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 250 ccgaggaatgaggagccacc 269 |||||||||||||||||||| Sbjct: 728 ccgaggaatgaggagccacc 747
>ref|NM_142185.2| Drosophila melanogaster MRG15 CG6363-RA (MRG15), mRNA Length = 1496 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 91 tctacgaggccaaggttctg 110 |||||||||||||||||||| Sbjct: 183 tctacgaggccaaggttctg 202
>gb|AC096952.5| Homo sapiens BAC clone RP11-191J2 from 4, complete sequence Length = 187578 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 192 agaaaattcatctggaaacc 211 |||||||||||||||||||| Sbjct: 120933 agaaaattcatctggaaacc 120914
>gb|AC027104.6| Homo sapiens chromosome 15, clone RP11-326L17, complete sequence Length = 180202 Score = 40.1 bits (20), Expect = 5.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 113 caaggccgagctgcagttcctggc 136 ||||||||||||| |||||||||| Sbjct: 114049 caaggccgagctgaagttcctggc 114026
>dbj|AK150776.1| Mus musculus bone marrow macrophage cDNA, RIKEN full-length enriched library, clone:I830015F01 product:Similar to NICE-5 protein (EC 6.3.2.19) (Ubiquitin-conjugating enzyme E2) (Ubiquitin-protein ligase) (Ubiquitin carrier protein), full insert sequence Length = 2760 Score = 40.1 bits (20), Expect = 5.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 113 caaggccgagctgcagttcctggc 136 ||||||||||||| |||||||||| Sbjct: 109 caaggccgagctgaagttcctggc 132
>ref|NM_173469.1| Homo sapiens ubiquitin-conjugating enzyme E2Q (putative) 2 (UBE2Q2), mRNA Length = 2939 Score = 40.1 bits (20), Expect = 5.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 113 caaggccgagctgcagttcctggc 136 ||||||||||||| |||||||||| Sbjct: 226 caaggccgagctgaagttcctggc 249
>gb|AC019294.7| Homo sapiens chromosome , clone RP11-24M17, complete sequence Length = 164310 Score = 40.1 bits (20), Expect = 5.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 113 caaggccgagctgcagttcctggc 136 ||||||||||||| |||||||||| Sbjct: 26252 caaggccgagctgaagttcctggc 26229
>gb|AY051679.1| Drosophila melanogaster LD22902 full length cDNA Length = 1495 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 91 tctacgaggccaaggttctg 110 |||||||||||||||||||| Sbjct: 159 tctacgaggccaaggttctg 178
>gb|AC157328.2| Mus musculus BAC clone RP23-230P11 from chromosome 9, complete sequence Length = 206694 Score = 40.1 bits (20), Expect = 5.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 113 caaggccgagctgcagttcctggc 136 ||||||||||||| |||||||||| Sbjct: 39247 caaggccgagctgaagttcctggc 39270
>gb|AC154588.2| Mus musculus BAC clone RP23-363L9 from chromosome 16, complete sequence Length = 200787 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 314 attttcagcttcttcttttt 333 |||||||||||||||||||| Sbjct: 177669 attttcagcttcttcttttt 177688
>gb|AC156832.2| Mus musculus BAC clone RP24-212B22 from chromosome 9, complete sequence Length = 181683 Score = 40.1 bits (20), Expect = 5.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 113 caaggccgagctgcagttcctggc 136 ||||||||||||| |||||||||| Sbjct: 168457 caaggccgagctgaagttcctggc 168480
>gb|BC109798.1| Bos taurus cDNA clone MGC:134315 IMAGE:8041217, complete cds Length = 1613 Score = 40.1 bits (20), Expect = 5.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 113 caaggccgagctgcagttcctggc 136 ||||||||||||| |||||||||| Sbjct: 175 caaggccgagctgaagttcctggc 198
>dbj|AK083216.1| Mus musculus adult male hippocampus cDNA, RIKEN full-length enriched library, clone:C630028N09 product:SIMILAR TO NICE-5 PROTEIN homolog [Homo sapiens], full insert sequence Length = 2933 Score = 40.1 bits (20), Expect = 5.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 113 caaggccgagctgcagttcctggc 136 ||||||||||||| |||||||||| Sbjct: 277 caaggccgagctgaagttcctggc 300
>dbj|AK042515.1| Mus musculus 3 days neonate thymus cDNA, RIKEN full-length enriched library, clone:A630098M22 product:Similar to NICE-5 protein (EC 6.3.2.19) (Ubiquitin-conjugating enzyme E2) (Ubiquitin-protein ligase) (Ubiquitin carrier protein) homolog [Mus musculus], full insert sequence Length = 798 Score = 40.1 bits (20), Expect = 5.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 113 caaggccgagctgcagttcctggc 136 ||||||||||||| |||||||||| Sbjct: 285 caaggccgagctgaagttcctggc 308
>gb|AF152245.1|AF152245 Drosophila melanogaster MRG15 mRNA, complete cds Length = 1484 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 91 tctacgaggccaaggttctg 110 |||||||||||||||||||| Sbjct: 168 tctacgaggccaaggttctg 187
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 123 ctgcagttcctggccatgct 142 |||||||||||||||||||| Sbjct: 23416271 ctgcagttcctggccatgct 23416252
>gb|AC007648.6|AC007648 Drosophila melanogaster, chromosome 3R, region 88E-88F, BAC clone BACR13A02, complete sequence Length = 166141 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 91 tctacgaggccaaggttctg 110 |||||||||||||||||||| Sbjct: 36924 tctacgaggccaaggttctg 36905
>gb|DP000024.1| Eulemur macaco macaco target 1 genomic scaffold Length = 1570569 Score = 40.1 bits (20), Expect = 5.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 315 ttttcagcttcttcttttttgtgt 338 |||||||||| ||||||||||||| Sbjct: 1356954 ttttcagctttttcttttttgtgt 1356977
>gb|AC009242.5| Homo sapiens BAC clone RP11-557N21 from 2, complete sequence Length = 158395 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 250 ccgaggaatgaggagccacc 269 |||||||||||||||||||| Sbjct: 8215 ccgaggaatgaggagccacc 8234
>gb|AC146411.4| Pan troglodytes BAC clone RP43-36G22 from chromosome 7, complete sequence Length = 162946 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 121 agctgcagttcctggccatg 140 |||||||||||||||||||| Sbjct: 147701 agctgcagttcctggccatg 147720
>gb|AC006487.9| Homo sapiens chromosome 17, clone RP5-1029K10, complete sequence Length = 186617 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 342 actaaaggaggacaatgatg 361 |||||||||||||||||||| Sbjct: 81996 actaaaggaggacaatgatg 82015
>ref|XM_343393.2| PREDICTED: Rattus norvegicus similar to RIKEN cDNA 3010021M21 (predicted) (LOC363065), mRNA Length = 2268 Score = 40.1 bits (20), Expect = 5.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 113 caaggccgagctgcagttcctggc 136 ||||||||||||| |||||||||| Sbjct: 1248 caaggccgagctgaagttcctggc 1271
>dbj|BA000016.3| Clostridium perfringens str. 13 DNA, complete genome Length = 3031430 Score = 40.1 bits (20), Expect = 5.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 310 ctccattttcagcttcttcttttt 333 ||||||||| |||||||||||||| Sbjct: 2415707 ctccattttgagcttcttcttttt 2415730 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 313 cattttcagcttcttctttt 332 |||||||||||||||||||| Sbjct: 141386 cattttcagcttcttctttt 141367
>dbj|AP006457.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OSJNBa0038P01 Length = 148506 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 123 ctgcagttcctggccatgct 142 |||||||||||||||||||| Sbjct: 129346 ctgcagttcctggccatgct 129327
>dbj|AB022217.1| Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone: MGL6 Length = 79459 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 315 ttttcagcttcttctttttt 334 |||||||||||||||||||| Sbjct: 4616 ttttcagcttcttctttttt 4635
>dbj|AP005293.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1653_F07, complete sequence Length = 110109 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 123 ctgcagttcctggccatgct 142 |||||||||||||||||||| Sbjct: 34946 ctgcagttcctggccatgct 34927
>dbj|AK000617.1| Homo sapiens cDNA FLJ20610 fis, clone KAT05796, highly similar to U08191 Human R kappa B mRNA Length = 2993 Score = 40.1 bits (20), Expect = 5.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 113 caaggccgagctgcagttcctggc 136 ||||||||||||| |||||||||| Sbjct: 378 caaggccgagctgaagttcctggc 401
>emb|Z54716.1|HS157C9R H.sapiens CpG island DNA genomic Mse1 fragment, clone 157c9, reverse read cpg157c9.rt1a Length = 250 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 342 actaaaggaggacaatgatg 361 |||||||||||||||||||| Sbjct: 13 actaaaggaggacaatgatg 32
>gb|AE003708.3| Drosophila melanogaster chromosome 3R, section 46 of 118 of the complete sequence Length = 236375 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 91 tctacgaggccaaggttctg 110 |||||||||||||||||||| Sbjct: 81356 tctacgaggccaaggttctg 81337
>gb|AC140259.3| Mus musculus BAC clone RP24-295G1 from 3, complete sequence Length = 167743 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 190 ggagaaaattcatctggaaa 209 |||||||||||||||||||| Sbjct: 9631 ggagaaaattcatctggaaa 9612
>gb|BC029111.1| Mus musculus ubiquitin-conjugating enzyme E2Q (putative) 2, mRNA (cDNA clone MGC:19370 IMAGE:2631258), complete cds Length = 2782 Score = 40.1 bits (20), Expect = 5.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 113 caaggccgagctgcagttcctggc 136 ||||||||||||| |||||||||| Sbjct: 113 caaggccgagctgaagttcctggc 136
>emb|Z69638.1|HSL174G8A Human DNA sequence from clone LA04NC01-174G8 on chromosome 4, complete sequence Length = 27974 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 140 gctccccgacctccgcccca 159 |||||||||||||||||||| Sbjct: 26917 gctccccgacctccgcccca 26898
>gb|M77344.1|BACREP Bacillus thurigiensis 50MDa plasmid replication-associated protein (rep) complete cds Length = 2393 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 315 ttttcagcttcttctttttt 334 |||||||||||||||||||| Sbjct: 1320 ttttcagcttcttctttttt 1301
>gb|M60465.1|BACORI44 B.thuringiensis replication protein (ori 44) gene, complete cds Length = 2249 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 315 ttttcagcttcttctttttt 334 |||||||||||||||||||| Sbjct: 1668 ttttcagcttcttctttttt 1649
>gb|U08191.1|HSU08191 Human R kappa B mRNA, complete cds Length = 5281 Score = 40.1 bits (20), Expect = 5.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 113 caaggccgagctgcagttcctggc 136 ||||||||||||| |||||||||| Sbjct: 922 caaggccgagctgaagttcctggc 899 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,960,531 Number of Sequences: 3902068 Number of extensions: 3960531 Number of successful extensions: 105395 Number of sequences better than 10.0: 62 Number of HSP's better than 10.0 without gapping: 62 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 105148 Number of HSP's gapped (non-prelim): 246 length of query: 430 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 408 effective length of database: 17,147,199,772 effective search space: 6996057506976 effective search space used: 6996057506976 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
