ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | baak4e21 |
|---|---|
| Clone Library Name | barley_pub |
>NDUA9_NEUCR (P25284) NADH-ubiquinone oxidoreductase 40 kDa subunit,| mitochondrial precursor (EC 1.6.5.3) (EC 1.6.99.3) (Complex I-40KD) (CI-40KD) Length = 375 Score = 71.2 bits (173), Expect = 2e-12 Identities = 48/135 (35%), Positives = 73/135 (54%) Frame = +3 Query: 63 GGSTKFQPVYVVDVAAAIVNSLKDDGTSMGKTYELGGPDVYTVHDLAEMMYETIREYPRY 242 G K+ PV+V+DV A+ L DD T+ +T+EL GP YT +++EM+ I + R+ Sbjct: 225 GMQEKYNPVHVIDVGQALEQMLWDDNTA-SETFELYGPKTYTTAEISEMVDREIYKRRRH 283 Query: 243 VNLPFPIAKAMASPREMLLNKVPFPLPTPSIFNLDQIKALSVDNLVSENALTFADLEIKP 422 VN+P I K +A +LNK L P I + D+I+ D ++ A TF DL I+P Sbjct: 284 VNVPKKILKPIAG----VLNKA---LWWP-IMSADEIEREFHDQVIDPEAKTFKDLGIEP 335 Query: 423 HKLKGYPTEFLVCYR 467 + + +L YR Sbjct: 336 ADIANFTYHYLQSYR 350
>NDUA9_MOUSE (Q9DC69) NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit| 9, mitochondrial precursor (EC 1.6.5.3) (EC 1.6.99.3) (NADH-ubiquinone oxidoreductase 39 kDa subunit) (Complex I-39KD) (CI-39KD) Length = 377 Score = 48.1 bits (113), Expect = 1e-05 Identities = 46/158 (29%), Positives = 76/158 (48%), Gaps = 3/158 (1%) Frame = +3 Query: 3 RILNRWAMYAKNWGF-LPLFG-GGSTKFQPVYVVDVAAAIVNSLKDDGTSMGKTYELGGP 176 R LN +A Y W +PL G T QPVYV DV+ IVN+ KD ++GKT+ GP Sbjct: 212 RFLNHFANY--RWFLAVPLVSLGFKTVKQPVYVADVSKGIVNATKDP-DAVGKTFAFTGP 268 Query: 177 DVYTVHDLAEMMY-ETIREYPRYVNLPFPIAKAMASPREMLLNKVPFPLPTPSIFNLDQI 353 + Y + L + ++ T R + +P+P+ + S L PF T D++ Sbjct: 269 NRYLLFHLVKYIFGMTHRTF-----IPYPLPLFVYSWIGKLFGLSPFEPWTTK----DKV 319 Query: 354 KALSVDNLVSENALTFADLEIKPHKLKGYPTEFLVCYR 467 + + + +++ + DL ++P L+ E L +R Sbjct: 320 ERIHISDVMPTDLPGLEDLGVQPTPLELKSIEVLRRHR 357
>NDUA9_BOVIN (P34943) NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit| 9, mitochondrial precursor (EC 1.6.5.3) (EC 1.6.99.3) (NADH-ubiquinone oxidoreductase 39 kDa subunit) (Complex I-39KD) (CI-39KD) Length = 380 Score = 46.2 bits (108), Expect = 6e-05 Identities = 31/88 (35%), Positives = 47/88 (53%), Gaps = 1/88 (1%) Frame = +3 Query: 3 RILNRWAMYAKNWGFLPLFG-GGSTKFQPVYVVDVAAAIVNSLKDDGTSMGKTYELGGPD 179 R LN +A + +G +PL G T QPVY+VDV I+N++KD + GKT+ GP Sbjct: 212 RFLNYFANI-RWFGGVPLISLGKKTVKQPVYIVDVTKGIINAIKDP-DARGKTFAFVGPS 269 Query: 180 VYTVHDLAEMMYETIREYPRYVNLPFPI 263 Y + DL + ++ LP+P+ Sbjct: 270 RYLLFDLVQYVFAVAHR----PFLPYPL 293
>NDUA9_HUMAN (Q16795) NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit| 9, mitochondrial precursor (EC 1.6.5.3) (EC 1.6.99.3) (NADH-ubiquinone oxidoreductase 39 kDa subunit) (Complex I-39KD) (CI-39KD) Length = 377 Score = 45.4 bits (106), Expect = 1e-04 Identities = 32/88 (36%), Positives = 48/88 (54%), Gaps = 1/88 (1%) Frame = +3 Query: 3 RILNRWAMYAKNWGFLPLFG-GGSTKFQPVYVVDVAAAIVNSLKDDGTSMGKTYELGGPD 179 R LN +A + +G +PL G T QPVYVVDV+ IVN++KD + GK++ GP Sbjct: 212 RFLNSFASMHR-FGPIPLGSLGWKTVKQPVYVVDVSKGIVNAVKDPDAN-GKSFAFVGPS 269 Query: 180 VYTVHDLAEMMYETIREYPRYVNLPFPI 263 Y + L + ++ + LPFP+ Sbjct: 270 RYLLFHLVKYIFAVAHR----LFLPFPL 293
>NDUA9_PONPY (Q5R5S0) NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit| 9, mitochondrial precursor (EC 1.6.5.3) (EC 1.6.99.3) (NADH-ubiquinone oxidoreductase 39 kDa subunit) (Complex I-39KD) (CI-39KD) Length = 377 Score = 44.7 bits (104), Expect = 2e-04 Identities = 32/88 (36%), Positives = 48/88 (54%), Gaps = 1/88 (1%) Frame = +3 Query: 3 RILNRWAMYAKNWGFLPLFG-GGSTKFQPVYVVDVAAAIVNSLKDDGTSMGKTYELGGPD 179 R LN +A + +G PL G T QPVYVVDV+ IVN++KD + GK++ GP+ Sbjct: 212 RFLNSFASMHR-FGPTPLGSLGWKTVKQPVYVVDVSKGIVNAVKDPDAN-GKSFAFVGPN 269 Query: 180 VYTVHDLAEMMYETIREYPRYVNLPFPI 263 Y + L + ++ + LPFP+ Sbjct: 270 RYLLFHLVKYIFAVAHR----LFLPFPL 293
>Y4NG_RHISN (P55579) Hypothetical 42.8 kDa protein y4nG| Length = 396 Score = 34.3 bits (77), Expect = 0.22 Identities = 18/69 (26%), Positives = 38/69 (55%) Frame = +3 Query: 48 LPLFGGGSTKFQPVYVVDVAAAIVNSLKDDGTSMGKTYELGGPDVYTVHDLAEMMYETIR 227 +P+ GGG+ K+Q V+ D+A+A + + G + TY +G + T+ +L +++ + Sbjct: 234 IPVLGGGNNKYQFVHSDDLASACIAASNVKGFA---TYNIGAAEFGTMRELLQVVIKHAE 290 Query: 228 EYPRYVNLP 254 R ++P Sbjct: 291 TGSRIKSIP 299
>YCX9_CHLRE (Q32065) Hypothetical 341.7 kDa protein in psbD-psbC intergenic| region (ORF2971) (ORFB) Length = 2971 Score = 32.7 bits (73), Expect = 0.64 Identities = 19/69 (27%), Positives = 34/69 (49%), Gaps = 2/69 (2%) Frame = +3 Query: 189 VHDLAEMMYETIREYPRYVNLPFPIAKAMASPREMLLNKVPFPLPTPSIFNLDQIK--AL 362 VH+ +++Y+ R + PF ++A P + + + LPT SI NL ++ L Sbjct: 2127 VHEKNQVVYQLTRHAITHYKKPFKGDYSLAIPTNLYVTDLFLKLPTQSISNLTNVENHNL 2186 Query: 363 SVDNLVSEN 389 S+ N + N Sbjct: 2187 SIKNKIQHN 2195
>RCEH_RHOCA (P19056) Reaction center protein H chain (Photosynthetic reaction| center H subunit) Length = 254 Score = 31.2 bits (69), Expect = 1.9 Identities = 16/49 (32%), Positives = 29/49 (59%), Gaps = 1/49 (2%) Frame = +3 Query: 300 NKVPFPLPTPSIFNLDQIKALSVDNLVSENALTFADLEIKPHKL-KGYP 443 N+ PFP+P+P F+L + + V ++ +E A DL ++ + +GYP Sbjct: 52 NQGPFPVPSPKTFDLADGRKIVVPSVENEEAHRRTDLALERTSVNEGYP 100
>YNJ1_YEAST (P53935) Hypothetical 141.5 kDa protein in YPT53-RHO2 intergenic| region Length = 1240 Score = 30.8 bits (68), Expect = 2.4 Identities = 15/42 (35%), Positives = 21/42 (50%) Frame = -1 Query: 285 LEKP*PLR*EKEDSRILDIRELFHTSFQPDHEQCKHPVHQAH 160 +EKP + D + IRE H S+ DH++ HP H H Sbjct: 489 VEKP------EHDEKSNGIRETLHLSYDHDHKRQNHPHHHYH 524
>PDZK3_HUMAN (O15018) PDZ domain-containing protein 3 (PDZ domain-containing| protein 2) (Activated in prostate cancer protein) Length = 2839 Score = 30.8 bits (68), Expect = 2.4 Identities = 28/89 (31%), Positives = 42/89 (47%), Gaps = 11/89 (12%) Frame = +3 Query: 243 VNLPFPIAKAMASPREMLLNKVPFPLPTP-SIFNLDQIKALSV---DNLVSEN------- 389 + +P P +ASP + + V P+P S L +++ALS+ D L SE+ Sbjct: 2449 LGIPTP-TMTLASPVKRNKSSVRHTQPSPVSRSKLQELRALSMPDLDKLCSEDYSAGPSA 2507 Query: 390 ALTFADLEIKPHKLKGYPTEFLVCYRKGG 476 L +LEI P + G P + C KGG Sbjct: 2508 VLFKTELEITPRRSPGPPAGGVSCPEKGG 2536
>TIM_DROVI (O17482) Protein timeless| Length = 1343 Score = 30.4 bits (67), Expect = 3.2 Identities = 15/32 (46%), Positives = 17/32 (53%), Gaps = 1/32 (3%) Frame = +3 Query: 435 GYPTEFLVCYRK-GGPSFGSTVSEKMGSEGCG 527 GYPT LVC K SF + +E S GCG Sbjct: 1224 GYPTSTLVCMNKLSNCSFAAPPNENSSSSGCG 1255
>SYV_BUCAI (P57447) Valyl-tRNA synthetase (EC 6.1.1.9) (Valine--tRNA ligase)| (ValRS) Length = 955 Score = 30.0 bits (66), Expect = 4.1 Identities = 16/48 (33%), Positives = 26/48 (54%) Frame = -2 Query: 296 QHFPWRSHSLCDRKRKIHVSWIFANCFIHHFSQIMNSVNIRSTKLIGL 153 Q FP +H L D+K + ++W+ I I ++N+ STKL+ L Sbjct: 779 QDFPEYNHKLFDKKILVQMNWM--KKIIVFLRNIRTNMNVSSTKLLPL 824
>AROA2_BURPS (P39915) 3-phosphoshikimate 1-carboxyvinyltransferase (EC 2.5.1.19)| (5-enolpyruvylshikimate-3-phosphate synthase) (EPSP synthase) (EPSPS) Length = 463 Score = 29.6 bits (65), Expect = 5.4 Identities = 23/84 (27%), Positives = 36/84 (42%), Gaps = 4/84 (4%) Frame = +3 Query: 288 EMLLNKVPFPLPTPS----IFNLDQIKALSVDNLVSENALTFADLEIKPHKLKGYPTEFL 455 ++ LN +PF +PT IF + I+ S L E T A + +KG P + Sbjct: 193 DITLNVMPFGVPTRDHTERIFAVSAIRYPSPAVLRLEGDATSASYFLAAAGIKGVPVTGI 252 Query: 456 VCYRKGGPSFGSTVSEKMGSEGCG 527 + G S+ +MG+ CG Sbjct: 253 GRHSMQGDSWFPRALRRMGARSCG 276
>CDR_STAAW (Q8NXE8) Coenzyme A disulfide reductase (EC 1.8.1.14)| (CoA-disulfide reductase) (CoADR) Length = 437 Score = 29.6 bits (65), Expect = 5.4 Identities = 25/96 (26%), Positives = 42/96 (43%), Gaps = 2/96 (2%) Frame = +3 Query: 159 YELGGPDVYTVHDLAEMMYETIREYPRYVNLPFPIAKAMASPREMLLNKVPFPLPTPSIF 338 +E P++Y + D+A Y R+V+LP + A + R + I Sbjct: 264 FETNVPNIYAIGDIATSHY-------RHVDLPASVPLAWGAHRAA-------SIVAEQIA 309 Query: 339 NLDQI--KALSVDNLVSENALTFADLEIKPHKLKGY 440 D I K +N+V TFA + +KP++LK + Sbjct: 310 GNDTIEFKGFLGNNIVKFFDYTFASVGVKPNELKQF 345
>CDR_STAAU (O52582) Coenzyme A disulfide reductase (EC 1.8.1.14)| (CoA-disulfide reductase) (CoADR) Length = 437 Score = 29.6 bits (65), Expect = 5.4 Identities = 25/96 (26%), Positives = 42/96 (43%), Gaps = 2/96 (2%) Frame = +3 Query: 159 YELGGPDVYTVHDLAEMMYETIREYPRYVNLPFPIAKAMASPREMLLNKVPFPLPTPSIF 338 +E P++Y + D+A Y R+V+LP + A + R + I Sbjct: 264 FETNVPNIYAIGDIATSHY-------RHVDLPASVPLAWGAHRAA-------SIVAEQIA 309 Query: 339 NLDQI--KALSVDNLVSENALTFADLEIKPHKLKGY 440 D I K +N+V TFA + +KP++LK + Sbjct: 310 GNDTIEFKGFLGNNIVKFFDYTFASVGVKPNELKQF 345
>CDR_STAAS (Q6GAV6) Coenzyme A disulfide reductase (EC 1.8.1.14)| (CoA-disulfide reductase) (CoADR) Length = 437 Score = 29.6 bits (65), Expect = 5.4 Identities = 25/96 (26%), Positives = 42/96 (43%), Gaps = 2/96 (2%) Frame = +3 Query: 159 YELGGPDVYTVHDLAEMMYETIREYPRYVNLPFPIAKAMASPREMLLNKVPFPLPTPSIF 338 +E P++Y + D+A Y R+V+LP + A + R + I Sbjct: 264 FETNVPNIYAIGDIATSHY-------RHVDLPASVPLAWGAHRAA-------SIVAEQIA 309 Query: 339 NLDQI--KALSVDNLVSENALTFADLEIKPHKLKGY 440 D I K +N+V TFA + +KP++LK + Sbjct: 310 GNDTIEFKGFLGNNIVKFFDYTFASVGVKPNELKQF 345
>CDR_STAAR (Q6GIB7) Coenzyme A disulfide reductase (EC 1.8.1.14)| (CoA-disulfide reductase) (CoADR) Length = 437 Score = 29.6 bits (65), Expect = 5.4 Identities = 25/96 (26%), Positives = 42/96 (43%), Gaps = 2/96 (2%) Frame = +3 Query: 159 YELGGPDVYTVHDLAEMMYETIREYPRYVNLPFPIAKAMASPREMLLNKVPFPLPTPSIF 338 +E P++Y + D+A Y R+V+LP + A + R + I Sbjct: 264 FETNVPNIYVIGDIATSHY-------RHVDLPASVPLAWGAHRAA-------SIVAEQIA 309 Query: 339 NLDQI--KALSVDNLVSENALTFADLEIKPHKLKGY 440 D I K +N+V TFA + +KP++LK + Sbjct: 310 GNDTIEFKGFLGNNIVKFFDYTFASVGVKPNELKQF 345
>CDR_STAAN (Q7A6H1) Coenzyme A disulfide reductase (EC 1.8.1.14)| (CoA-disulfide reductase) (CoADR) Length = 437 Score = 29.6 bits (65), Expect = 5.4 Identities = 25/96 (26%), Positives = 42/96 (43%), Gaps = 2/96 (2%) Frame = +3 Query: 159 YELGGPDVYTVHDLAEMMYETIREYPRYVNLPFPIAKAMASPREMLLNKVPFPLPTPSIF 338 +E P++Y + D+A Y R+V+LP + A + R + I Sbjct: 264 FETNVPNIYAIGDIATSHY-------RHVDLPASVPLAWGAHRAA-------SIVAEQIA 309 Query: 339 NLDQI--KALSVDNLVSENALTFADLEIKPHKLKGY 440 D I K +N+V TFA + +KP++LK + Sbjct: 310 GNDTIEFKGFLGNNIVKFFDYTFASVGVKPNELKQF 345
>CDR_STAAM (Q99VC0) Coenzyme A disulfide reductase (EC 1.8.1.14)| (CoA-disulfide reductase) (CoADR) Length = 437 Score = 29.6 bits (65), Expect = 5.4 Identities = 25/96 (26%), Positives = 42/96 (43%), Gaps = 2/96 (2%) Frame = +3 Query: 159 YELGGPDVYTVHDLAEMMYETIREYPRYVNLPFPIAKAMASPREMLLNKVPFPLPTPSIF 338 +E P++Y + D+A Y R+V+LP + A + R + I Sbjct: 264 FETNVPNIYAIGDIATSHY-------RHVDLPASVPLAWGAHRAA-------SIVAEQIA 309 Query: 339 NLDQI--KALSVDNLVSENALTFADLEIKPHKLKGY 440 D I K +N+V TFA + +KP++LK + Sbjct: 310 GNDTIEFKGFLGNNIVKFFDYTFASVGVKPNELKQF 345
>CDR_STAAC (Q5HHB4) Coenzyme A disulfide reductase (EC 1.8.1.14)| (CoA-disulfide reductase) (CoADR) Length = 437 Score = 29.6 bits (65), Expect = 5.4 Identities = 25/96 (26%), Positives = 42/96 (43%), Gaps = 2/96 (2%) Frame = +3 Query: 159 YELGGPDVYTVHDLAEMMYETIREYPRYVNLPFPIAKAMASPREMLLNKVPFPLPTPSIF 338 +E P++Y + D+A Y R+V+LP + A + R + I Sbjct: 264 FETNVPNIYAIGDIATSHY-------RHVDLPASVPLAWGAHRAA-------SIVAEQIA 309 Query: 339 NLDQI--KALSVDNLVSENALTFADLEIKPHKLKGY 440 D I K +N+V TFA + +KP++LK + Sbjct: 310 GNDTIEFKGFLGNNIVKFFDYTFASVGVKPNELKQF 345
>GUAA_MANSM (Q65UI1) GMP synthase [glutamine-hydrolyzing] (EC 6.3.5.2)| (Glutamine amidotransferase) (GMP synthetase) Length = 523 Score = 29.3 bits (64), Expect = 7.1 Identities = 25/84 (29%), Positives = 38/84 (45%) Frame = +3 Query: 159 YELGGPDVYTVHDLAEMMYETIREYPRYVNLPFPIAKAMASPREMLLNKVPFPLPTPSIF 338 + +GG Y L E + E ++ R + L A+ P EML N+ PFP P + Sbjct: 357 HNVGGLPDYMKLGLVEPLRELFKDEVRKIGL------ALGLPAEML-NRHPFPGPGLGVR 409 Query: 339 NLDQIKALSVDNLVSENALTFADL 410 L +IK D L +A+ +L Sbjct: 410 VLGEIKKEYCDLLRKADAIFIEEL 433
>NTH1_CAEEL (P54137) Probable endonuclease III homolog (EC 4.2.99.18)| (DNA-(Apurinic or apyrimidinic site) lyase) Length = 259 Score = 29.3 bits (64), Expect = 7.1 Identities = 14/31 (45%), Positives = 19/31 (61%) Frame = +3 Query: 99 DVAAAIVNSLKDDGTSMGKTYELGGPDVYTV 191 +V AA + LKD G S+GK E PD+ T+ Sbjct: 44 EVNAAAMKRLKDHGLSIGKILEFKVPDLETI 74
>FLAV_TRIER (O52659) Flavodoxin (Fragment)| Length = 144 Score = 29.3 bits (64), Expect = 7.1 Identities = 16/44 (36%), Positives = 21/44 (47%), Gaps = 8/44 (18%) Frame = +3 Query: 138 GTSMGKTYE--------LGGPDVYTVHDLAEMMYETIREYPRYV 245 GT+ GKT E GG DV T+HD++E E Y + Sbjct: 7 GTTTGKTEEAAEKIKEEFGGDDVVTIHDISEASPEDFDGYQNVI 50
>SATC_AQUAE (O67174) Probable bifunctional SAT/APS kinase [Includes: Sulfate| adenylyltransferase (EC 2.7.7.4) (Sulfate adenylate transferase) (SAT) (ATP-sulfurylase); Adenylyl-sulfate kinase (EC 2.7.1.25) (APS kinase) (Adenosine-5'phosphosulfate kinase) ( Length = 546 Score = 29.3 bits (64), Expect = 7.1 Identities = 15/43 (34%), Positives = 23/43 (53%) Frame = +3 Query: 168 GGPDVYTVHDLAEMMYETIREYPRYVNLPFPIAKAMASPREML 296 G DVYT + +++YE + + + P+A MA PRE L Sbjct: 206 GDVDVYTRMRIYKVLYEKYYDKKKTILAFLPLAMRMAGPREAL 248
>Y075_METJA (Q60388) Hypothetical ATP-binding protein MJ0075| Length = 365 Score = 29.3 bits (64), Expect = 7.1 Identities = 22/76 (28%), Positives = 35/76 (46%) Frame = +3 Query: 114 IVNSLKDDGTSMGKTYELGGPDVYTVHDLAEMMYETIREYPRYVNLPFPIAKAMASPREM 293 I+N LKDD Y L G + + D ++M+E IRE ++ K M ++ Sbjct: 44 IINRLKDDKKYRIFYYNLRGVRISSYSDFFDIMFE-IREDNKF--------KQMVKDADV 94 Query: 294 LLNKVPFPLPTPSIFN 341 L+ + F T +FN Sbjct: 95 LVEGIKFIEKTAKLFN 110
>SYK_CHLPN (Q9Z6X5) Lysyl-tRNA synthetase (EC 6.1.1.6) (Lysine--tRNA ligase)| (LysRS) Length = 527 Score = 29.3 bits (64), Expect = 7.1 Identities = 30/122 (24%), Positives = 51/122 (41%), Gaps = 1/122 (0%) Frame = +3 Query: 87 VYVVDVAAAIVNSLKDDGTSMGKTYELGGPDVYTVHDLAEMMYETIRE-YPRYVNLPFPI 263 V+V ++ +V ++ D TS+ +Y GP V A + T++E Y + + Sbjct: 300 VFVENLVEHLVRAVNHDNTSLVYSYWKHGPQ--EVDFKAPWIRMTMKESIATYAGIDVDV 357 Query: 264 AKAMASPREMLLNKVPFPLPTPSIFNLDQIKALSVDNLVSENALTFADLEIKPHKLKGYP 443 +E+L K FP + + + A D LVS+N I PH + +P Sbjct: 358 HSDQKL-KEILKKKTTFPETAFATASRGMLIAALFDELVSDNL-------IAPHHITDHP 409 Query: 444 TE 449 E Sbjct: 410 VE 411
>ENV_MMTVG (P03374) Env polyprotein [Contains: Coat protein GP52; Coat protein| GP36] Length = 688 Score = 28.9 bits (63), Expect = 9.2 Identities = 16/42 (38%), Positives = 22/42 (52%) Frame = +3 Query: 234 PRYVNLPFPIAKAMASPREMLLNKVPFPLPTPSIFNLDQIKA 359 PR++ FP SP+ L F LP+PS+ DQIK+ Sbjct: 249 PRWLPCAFPDKGVSFSPKGALGLLWDFSLPSPSVDQSDQIKS 290
>ENV_MMTVC (Q85646) Env polyprotein [Contains: Coat protein GP52; Coat protein| GP36] Length = 688 Score = 28.9 bits (63), Expect = 9.2 Identities = 16/42 (38%), Positives = 22/42 (52%) Frame = +3 Query: 234 PRYVNLPFPIAKAMASPREMLLNKVPFPLPTPSIFNLDQIKA 359 PR++ FP SP+ L F LP+PS+ DQIK+ Sbjct: 249 PRWLPCAFPDQGVSFSPKGALGLLWDFSLPSPSVDQSDQIKS 290
>ENV_MMTVB (P10259) Env polyprotein [Contains: Coat protein GP52; Coat protein| GP36] Length = 688 Score = 28.9 bits (63), Expect = 9.2 Identities = 16/42 (38%), Positives = 22/42 (52%) Frame = +3 Query: 234 PRYVNLPFPIAKAMASPREMLLNKVPFPLPTPSIFNLDQIKA 359 PR++ FP SP+ L F LP+PS+ DQIK+ Sbjct: 249 PRWLPCAFPDQGVSFSPKGALGLLWDFSLPSPSVDQSDQIKS 290
>SYFB_ANAVT (Q3MAZ7) Phenylalanyl-tRNA synthetase beta chain (EC 6.1.1.20)| (Phenylalanine--tRNA ligase beta chain) (PheRS) Length = 810 Score = 28.9 bits (63), Expect = 9.2 Identities = 11/22 (50%), Positives = 17/22 (77%) Frame = +3 Query: 405 DLEIKPHKLKGYPTEFLVCYRK 470 DL+IKP KL+G P++ ++C K Sbjct: 103 DLKIKPAKLRGVPSQGMICSLK 124
>SYFB_ANASP (Q8YMH5) Phenylalanyl-tRNA synthetase beta chain (EC 6.1.1.20)| (Phenylalanine--tRNA ligase beta chain) (PheRS) Length = 810 Score = 28.9 bits (63), Expect = 9.2 Identities = 11/22 (50%), Positives = 17/22 (77%) Frame = +3 Query: 405 DLEIKPHKLKGYPTEFLVCYRK 470 DL+IKP KL+G P++ ++C K Sbjct: 103 DLKIKPAKLRGVPSQGMICSLK 124
>DUOX1_RAT (Q8CIY2) Dual oxidase 1 precursor (EC 1.6.3.1) (EC 1.11.1.-)| Length = 1551 Score = 28.9 bits (63), Expect = 9.2 Identities = 15/52 (28%), Positives = 29/52 (55%), Gaps = 3/52 (5%) Frame = +3 Query: 285 REMLLNKVPFPLPTPSIFNLDQIKALSVDNL---VSENALTFADLEIKPHKL 431 R LL K+P +FN+++ + V+N+ + EN L+F + E++ +L Sbjct: 699 RRTLLLKIPKEYDLVLLFNMEEERQALVENIRAALKENGLSFQEWELREQEL 750
>RS4E_PYRFU (Q8U011) 30S ribosomal protein S4e| Length = 243 Score = 28.9 bits (63), Expect = 9.2 Identities = 12/36 (33%), Positives = 20/36 (55%) Frame = +3 Query: 153 KTYELGGPDVYTVHDLAEMMYETIREYPRYVNLPFP 260 K + +G PDV T+ D +++T++EY V P Sbjct: 203 KRFPMGWPDVVTIEDEEGELFDTLKEYAFVVGTDKP 238 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 83,522,094 Number of Sequences: 219361 Number of extensions: 1741286 Number of successful extensions: 5351 Number of sequences better than 10.0: 33 Number of HSP's better than 10.0 without gapping: 5196 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5346 length of database: 80,573,946 effective HSP length: 105 effective length of database: 57,541,041 effective search space used: 4085413911 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
