ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | baak4e20 |
|---|---|
| Clone Library Name | barley_pub |
>PSBR_SPIOL (P10690) Photosystem II 10 kDa polypeptide, chloroplast precursor| Length = 140 Score = 100 bits (248), Expect = 1e-21 Identities = 51/80 (63%), Positives = 54/80 (67%) Frame = +1 Query: 4 GTRTSTSTPTAGKVGKKGVYQFVDKYGANVDGYSPIYTPEEWSESGDRYAGGTTGLLIWA 183 G +S PT KGVYQFVDKYGANVDGYSPIY EEW+ +GD YAGGTTGLLIWA Sbjct: 64 GVDSSGRKPTG-----KGVYQFVDKYGANVDGYSPIYNEEEWAPTGDVYAGGTTGLLIWA 118 Query: 184 VTXXXXXXXXXXXVYNTSAL 243 VT VYNTSAL Sbjct: 119 VTLAGLLAGGALLVYNTSAL 138
>PSBR_HORVU (Q40070) Photosystem II 10 kDa polypeptide, chloroplast precursor| Length = 138 Score = 99.8 bits (247), Expect = 2e-21 Identities = 49/81 (60%), Positives = 53/81 (65%), Gaps = 1/81 (1%) Frame = +1 Query: 4 GTRTSTSTPTAGKVGK-KGVYQFVDKYGANVDGYSPIYTPEEWSESGDRYAGGTTGLLIW 180 G +G+V K KGVYQF DKYGANVDGYSPIYTPEEWS SGD Y GG TGL +W Sbjct: 56 GVAFKEGVDASGRVAKGKGVYQFADKYGANVDGYSPIYTPEEWSPSGDVYVGGKTGLFLW 115 Query: 181 AVTXXXXXXXXXXXVYNTSAL 243 AVT VY+TSAL Sbjct: 116 AVTLAGILLGGALLVYSTSAL 136
>PSBR_SOLTU (P06183) Photosystem II 10 kDa polypeptide, chloroplast precursor| (Light-inducible tissue-specific ST-LS1 protein) Length = 138 Score = 95.9 bits (237), Expect = 2e-20 Identities = 45/64 (70%), Positives = 47/64 (73%) Frame = +1 Query: 52 KGVYQFVDKYGANVDGYSPIYTPEEWSESGDRYAGGTTGLLIWAVTXXXXXXXXXXXVYN 231 KGVYQ+VDKYGANVDGYSPIY +EWS SGD Y GGTTGL IWAVT VYN Sbjct: 73 KGVYQYVDKYGANVDGYSPIYNTDEWSPSGDVYVGGTTGLAIWAVTLVGILAGGALLVYN 132 Query: 232 TSAL 243 TSAL Sbjct: 133 TSAL 136
>PSBR_LYCES (Q40163) Photosystem II 10 kDa polypeptide, chloroplast precursor| Length = 138 Score = 95.9 bits (237), Expect = 2e-20 Identities = 45/64 (70%), Positives = 47/64 (73%) Frame = +1 Query: 52 KGVYQFVDKYGANVDGYSPIYTPEEWSESGDRYAGGTTGLLIWAVTXXXXXXXXXXXVYN 231 KGVYQ+VDKYGANVDGYSPIY +EWS SGD Y GGTTGL IWAVT VYN Sbjct: 73 KGVYQYVDKYGANVDGYSPIYNTDEWSPSGDVYVGGTTGLAIWAVTLLGILAGGALLVYN 132 Query: 232 TSAL 243 TSAL Sbjct: 133 TSAL 136
>PSBR_TOBAC (Q40519) Photosystem II 10 kDa polypeptide, chloroplast precursor| (PII10) Length = 136 Score = 94.4 bits (233), Expect = 7e-20 Identities = 44/64 (68%), Positives = 47/64 (73%) Frame = +1 Query: 52 KGVYQFVDKYGANVDGYSPIYTPEEWSESGDRYAGGTTGLLIWAVTXXXXXXXXXXXVYN 231 KGVYQFVDKYGANVDGYSPIY ++WS SGD Y GGTTGL IWAVT V+N Sbjct: 71 KGVYQFVDKYGANVDGYSPIYNTDDWSPSGDVYVGGTTGLAIWAVTLVGILAGGALLVFN 130 Query: 232 TSAL 243 TSAL Sbjct: 131 TSAL 134
>PSBR_BRACM (P49108) Photosystem II 10 kDa polypeptide, chloroplast precursor| Length = 141 Score = 93.2 bits (230), Expect = 2e-19 Identities = 46/71 (64%), Positives = 50/71 (70%), Gaps = 1/71 (1%) Frame = +1 Query: 34 AGKVGKK-GVYQFVDKYGANVDGYSPIYTPEEWSESGDRYAGGTTGLLIWAVTXXXXXXX 210 +G+ GK GVY+FVDKYGANVDGYSPIY +EWS SGD Y GG TGL IWAVT Sbjct: 69 SGRKGKGYGVYKFVDKYGANVDGYSPIYNEDEWSASGDVYKGGVTGLAIWAVTLAGILAG 128 Query: 211 XXXXVYNTSAL 243 VYNTSAL Sbjct: 129 GALLVYNTSAL 139
>PSBR_ARATH (P27202) Photosystem II 10 kDa polypeptide, chloroplast precursor| Length = 140 Score = 91.3 bits (225), Expect = 6e-19 Identities = 45/71 (63%), Positives = 49/71 (69%), Gaps = 1/71 (1%) Frame = +1 Query: 34 AGKVGKK-GVYQFVDKYGANVDGYSPIYTPEEWSESGDRYAGGTTGLLIWAVTXXXXXXX 210 +G+ GK GVY++VDKYGANVDGYSPIY EWS SGD Y GG TGL IWAVT Sbjct: 68 SGRKGKGYGVYKYVDKYGANVDGYSPIYNENEWSASGDVYKGGVTGLAIWAVTLAGILAG 127 Query: 211 XXXXVYNTSAL 243 VYNTSAL Sbjct: 128 GALLVYNTSAL 138
>TBB1_NEIMB (Q09057) Transferrin-binding protein 2 precursor (TBP-2)| Length = 711 Score = 30.4 bits (67), Expect = 1.3 Identities = 19/51 (37%), Positives = 26/51 (50%) Frame = +1 Query: 4 GTRTSTSTPTAGKVGKKGVYQFVDKYGANVDGYSPIYTPEEWSESGDRYAG 156 G + S P +GKV KGV+ FV D + I P + + GDRY+G Sbjct: 187 GEKPSRQLPASGKVIYKGVWHFVTDTKKGQD-FREIIQPSK--KQGDRYSG 234
>Y148_MYCPN (P75138) Hypothetical protein MPN148 (E07_orf140)| Length = 140 Score = 28.9 bits (63), Expect = 3.7 Identities = 14/35 (40%), Positives = 16/35 (45%) Frame = +1 Query: 1 FGTRTSTSTPTAGKVGKKGVYQFVDKYGANVDGYS 105 FG S S +K V QF+D Y N GYS Sbjct: 92 FGASISWSLKGKDDASEKSVKQFLDSYANNTSGYS 126
>FTSI_BUCAP (O85297) Peptidoglycan synthetase ftsI (EC 2.4.1.129)| (Peptidoglycan glycosyltransferase 3) (Penicillin-binding protein 3) (PBP-3) Length = 568 Score = 28.5 bits (62), Expect = 4.8 Identities = 20/66 (30%), Positives = 30/66 (45%), Gaps = 6/66 (9%) Frame = +1 Query: 4 GTRTSTSTPTAGKVGKKGVYQFVDKYGANVDGYSPIYTPEEW------SESGDRYAGGTT 165 G R + T TA KVG G Y + KY A G +P P+ + G++Y GG Sbjct: 483 GYRVAIKTGTAKKVGIHGYY--IKKYIAYTAGIAPASNPKFSLTIIIDNPKGEKYYGGAV 540 Query: 166 GLLIWA 183 +++ Sbjct: 541 SAPVFS 546
>DYH5_HUMAN (Q8TE73) Ciliary dynein heavy chain 5 (Axonemal beta dynein heavy| chain 5) (HL1) Length = 4624 Score = 28.1 bits (61), Expect = 6.3 Identities = 13/42 (30%), Positives = 23/42 (54%), Gaps = 1/42 (2%) Frame = +1 Query: 61 YQFV-DKYGANVDGYSPIYTPEEWSESGDRYAGGTTGLLIWA 183 YQ + + YGA++D S +YT +++ R G ++WA Sbjct: 589 YQLILENYGADIDMISKLYTKQKYDPPLARNQPPIAGKILWA 630 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.311 0.132 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 22,126,163 Number of Sequences: 219361 Number of extensions: 318638 Number of successful extensions: 703 Number of sequences better than 10.0: 11 Number of HSP's better than 10.0 without gapping: 701 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 703 length of database: 80,573,946 effective HSP length: 56 effective length of database: 68,289,730 effective search space used: 1638953520 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.8 bits)
