Clone Name	baak4e19
Clone Library Name	barley_pub

---

No.	Definition	Score (bits)	E Value
1	ref|XM_468577.1| Oryza sativa (japonica cultivar-group), predic...	301	7e-79
2	dbj|AK065033.1| Oryza sativa (japonica cultivar-group) cDNA clon...	301	7e-79
3	dbj|AB042934.1| Oryza sativa (japonica cultivar-group) mRNA for ...	301	7e-79
4	gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3	212	5e-52
5	dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D...	212	5e-52
6	gb|AC098695.2| Oryza sativa (japonica cultivar-group) chromosome...	212	5e-52
7	gb|AC158183.2| Selaginella moellendorffii clone JGIASXY-5D8, com...	125	9e-26
8	ref|NM_103032.2| Arabidopsis thaliana PRPL11 (PLASTID RIBOSOMAL ...	58	2e-05
9	gb|AY063070.1| Arabidopsis thaliana putative ribosomal protein L...	58	2e-05
10	emb|X56615.1|SORPL11 S.oleracea mRNA for chloroplast ribosomal p...	58	2e-05
11	gb|AF370254.1| Arabidopsis thaliana putative ribosomal protein L...	58	2e-05
12	gb|CP000240.1| Synechococcus sp. JA-2-3B'a(2-13), complete genome	58	2e-05
13	gb|AF412105.1|AF412105 Arabidopsis thaliana At1g32990/F9L11_15 m...	58	2e-05
14	gb|AF325023.2|AF325023 Arabidopsis thaliana At1g32990 (At1g32990...	58	2e-05
15	gb|AY085664.1| Arabidopsis thaliana clone 16773 mRNA, complete s...	58	2e-05
16	dbj|AP008231.1| Synechococcus elongatus PCC 6301 DNA, complete g...	50	0.004
17	gb|AE017285.1| Desulfovibrio vulgaris subsp. vulgaris str. Hilde...	50	0.004
18	gb|CP000100.1| Synechococcus elongatus PCC 7942, complete genome	50	0.004
19	ref|NM_124540.1| Arabidopsis thaliana structural constituent of ...	48	0.017
20	gb|CP000239.1| Synechococcus sp. JA-3-3Ab, complete genome	48	0.017
21	gb|AF184768.1|AF184768 Arabidopsis thaliana inhibitor tagged sit...	48	0.017
22	dbj|AB018109.1| Arabidopsis thaliana genomic DNA, chromosome 5, ...	48	0.017
23	gb|CP000115.1| Nitrobacter winogradskyi Nb-255, complete genome	44	0.27
24	emb|X87296.1|ATRPL11GE A.thaliana rpl11 gene	44	0.27
25	emb|BX640438.1| Bordetella bronchiseptica strain RB50, complete ...	44	0.27
26	emb|BX640424.1| Bordetella parapertussis strain 12822, complete ...	44	0.27
27	emb|BX640412.1| Bordetella pertussis strain Tohama I, complete g...	44	0.27
28	gb|AC006424.5|AC006424 Arabidopsis thaliana chromosome I BAC F9L...	44	0.27
29	gb|AE014295.3| Bifidobacterium longum NCC2705, complete genome	44	0.27
30	emb|X73005.1|SPC6RPL1A Synechocystis PCC6803 genes for ribosomal...	42	1.1
31	emb|BX640439.1| Bordetella bronchiseptica strain RB50, complete ...	42	1.1
32	dbj|BA000022.2| Synechocystis sp. PCC 6803 DNA, complete genome	42	1.1
33	dbj|AP006840.1| Symbiobacterium thermophilum IAM 14863 DNA, comp...	42	1.1
34	gb|CP000024.1| Streptococcus thermophilus CNRZ1066, complete genome	40	4.2
35	gb|CP000358.1| Deinococcus geothermalis DSM 11300 plasmid 1, com...	40	4.2
36	gb|CP000262.1| Streptococcus pyogenes MGAS10750, complete genome	40	4.2
37	gb|AC124547.4| Mus musculus BAC clone RP23-274I8 from chromosome...	40	4.2
38	ref|XM_756704.1| Ustilago maydis 521 hypothetical protein (UM056...	40	4.2
39	gb|AC000353.27| Homo sapiens Chromosome 11q13 BAC Clone 18h3, co...	40	4.2
40	gb|AE017282.2| Methylococcus capsulatus str. Bath, complete genome	40	4.2
41	gb|AC012456.10| Homo sapiens BAC clone RP11-484O9 from 2, comple...	40	4.2
42	gb|AC117396.2| Homo sapiens 3 BAC RP11-89E16 (Roswell Park Cance...	40	4.2
43	gb|AY220877.1| Homo sapiens requiem, apoptosis response zinc fin...	40	4.2
44	gb|AC124566.5| Mus musculus BAC clone RP23-144N15 from 7, comple...	40	4.2
45	dbj|AP000944.4| Homo sapiens genomic DNA, chromosome 11 clone:RP...	40	4.2
46	emb|CT573093.3| CH250-1K10, complete sequence	40	4.2
47	gb|CP000085.1| Burkholderia thailandensis E264 chromosome II, co...	40	4.2
48	gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. ...	40	4.2
49	gb|AE000520.1| Treponema pallidum subsp. pallidum str. Nichols c...	40	4.2
50	gb|U43920.1|HSU43920 Human ubi-d4 gene, partial cds	40	4.2
51	gb|CP000023.1| Streptococcus thermophilus LMG 18311, complete ge...	40	4.2

---

>ref|XM_468577.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 666

 Score =  301 bits (152), Expect = 7e-79
 Identities = 251/284 (88%)
 Strand = Plus / Plus

                                                                       
Query: 1   gtggtgggcatcataaagctggcgctggaggcgggcaaggcgacgcccgcgccacccgtc 60
           ||||||||| |||||||||||||||||||||| || ||||| ||||| ||||| || |||
Sbjct: 187 gtggtgggcctcataaagctggcgctggaggccgggaaggccacgccggcgccgccggtc 246

                                                                       
Query: 61  ggaccggcgctcggtgccaagggtgtgaacatcatggccttctgtaaggattacaatgcc 120
           || || ||||| |||||||||||||||||||||||| ||||||| ||||| |||||||||
Sbjct: 247 ggccccgcgcttggtgccaagggtgtgaacatcatgtccttctgcaaggagtacaatgcc 306

                                                                       
Query: 121 aagacggccgacaagcccggctacattatccccgtcgagatcaccgtgttcgatgataag 180
           ||||||||||| ||| |||||||||| ||||| |||||||||||||||||||||||||| 
Sbjct: 307 aagacggccgagaaggccggctacatcatccctgtcgagatcaccgtgttcgatgataaa 366

                                                                       
Query: 181 agcttcacctttatcctcaagacacctcctgcctcagtactgctcctcaaggctgcaggt 240
           || |||||||||||| | ||||| |||||||||||||| || ||||||||||| ||||||
Sbjct: 367 agtttcacctttatcttgaagacccctcctgcctcagtccttctcctcaaggcagcaggt 426

                                                       
Query: 241 gtcgaaaaaggctcaaaggagccacaacgtgagaaggttggaaa 284
            |||| ||||| ||||| || || || || ||||||||||||||
Sbjct: 427 atcgagaaaggttcaaaagaaccgcagcgagagaaggttggaaa 470

---

>dbj|AK065033.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013001H03, full
           insert sequence
          Length = 986

 Score =  301 bits (152), Expect = 7e-79
 Identities = 251/284 (88%)
 Strand = Plus / Plus

                                                                       
Query: 1   gtggtgggcatcataaagctggcgctggaggcgggcaaggcgacgcccgcgccacccgtc 60
           ||||||||| |||||||||||||||||||||| || ||||| ||||| ||||| || |||
Sbjct: 234 gtggtgggcctcataaagctggcgctggaggccgggaaggccacgccggcgccgccggtc 293

                                                                       
Query: 61  ggaccggcgctcggtgccaagggtgtgaacatcatggccttctgtaaggattacaatgcc 120
           || || ||||| |||||||||||||||||||||||| ||||||| ||||| |||||||||
Sbjct: 294 ggccccgcgcttggtgccaagggtgtgaacatcatgtccttctgcaaggagtacaatgcc 353

                                                                       
Query: 121 aagacggccgacaagcccggctacattatccccgtcgagatcaccgtgttcgatgataag 180
           ||||||||||| ||| |||||||||| ||||| |||||||||||||||||||||||||| 
Sbjct: 354 aagacggccgagaaggccggctacatcatccctgtcgagatcaccgtgttcgatgataaa 413

                                                                       
Query: 181 agcttcacctttatcctcaagacacctcctgcctcagtactgctcctcaaggctgcaggt 240
           || |||||||||||| | ||||| |||||||||||||| || ||||||||||| ||||||
Sbjct: 414 agtttcacctttatcttgaagacccctcctgcctcagtccttctcctcaaggcagcaggt 473

                                                       
Query: 241 gtcgaaaaaggctcaaaggagccacaacgtgagaaggttggaaa 284
            |||| ||||| ||||| || || || || ||||||||||||||
Sbjct: 474 atcgagaaaggttcaaaagaaccgcagcgagagaaggttggaaa 517

---

>dbj|AB042934.1| Oryza sativa (japonica cultivar-group) mRNA for plastid ribosomal
           protein L11, complete cds
          Length = 790

 Score =  301 bits (152), Expect = 7e-79
 Identities = 251/284 (88%)
 Strand = Plus / Plus

                                                                       
Query: 1   gtggtgggcatcataaagctggcgctggaggcgggcaaggcgacgcccgcgccacccgtc 60
           ||||||||| |||||||||||||||||||||| || ||||| ||||| ||||| || |||
Sbjct: 227 gtggtgggcctcataaagctggcgctggaggccgggaaggccacgccggcgccgccggtc 286

                                                                       
Query: 61  ggaccggcgctcggtgccaagggtgtgaacatcatggccttctgtaaggattacaatgcc 120
           || || ||||| |||||||||||||||||||||||| ||||||| ||||| |||||||||
Sbjct: 287 ggccccgcgcttggtgccaagggtgtgaacatcatgtccttctgcaaggagtacaatgcc 346

                                                                       
Query: 121 aagacggccgacaagcccggctacattatccccgtcgagatcaccgtgttcgatgataag 180
           ||||||||||| ||| |||||||||| ||||| |||||||||||||||||||||||||| 
Sbjct: 347 aagacggccgagaaggccggctacatcatccctgtcgagatcaccgtgttcgatgataaa 406

                                                                       
Query: 181 agcttcacctttatcctcaagacacctcctgcctcagtactgctcctcaaggctgcaggt 240
           || |||||||||||| | ||||| |||||||||||||| || ||||||||||| ||||||
Sbjct: 407 agtttcacctttatcttgaagacccctcctgcctcagtccttctcctcaaggcagcaggt 466

                                                       
Query: 241 gtcgaaaaaggctcaaaggagccacaacgtgagaaggttggaaa 284
            |||| ||||| ||||| || || || || ||||||||||||||
Sbjct: 467 atcgagaaaggttcaaaagaaccgcagcgagagaaggttggaaa 510

---

>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score =  212 bits (107), Expect = 5e-52
 Identities = 158/175 (90%)
 Strand = Plus / Minus

                                                                           
Query: 1       gtggtgggcatcataaagctggcgctggaggcgggcaaggcgacgcccgcgccacccgtc 60
               ||||||||| |||||||||||||||||||||| || ||||| ||||| ||||| || |||
Sbjct: 1213805 gtggtgggcctcataaagctggcgctggaggccgggaaggccacgccggcgccgccggtc 1213746

                                                                           
Query: 61      ggaccggcgctcggtgccaagggtgtgaacatcatggccttctgtaaggattacaatgcc 120
               || || ||||| |||||||||||||||||||||||| ||||||| ||||| |||||||||
Sbjct: 1213745 ggccccgcgcttggtgccaagggtgtgaacatcatgtccttctgcaaggagtacaatgcc 1213686

                                                                      
Query: 121     aagacggccgacaagcccggctacattatccccgtcgagatcaccgtgttcgatg 175
               ||||||||||| ||| |||||||||| ||||| ||||||||||||||||||||||
Sbjct: 1213685 aagacggccgagaaggccggctacatcatccctgtcgagatcaccgtgttcgatg 1213631



 Score = 71.9 bits (36), Expect = 1e-09
 Identities = 60/68 (88%)
 Strand = Plus / Minus

                                                                           
Query: 175     gataagagcttcacctttatcctcaagacacctcctgcctcagtactgctcctcaaggct 234
               ||||| || |||||||||||| | ||||| |||||||||||||| || ||||||||||| 
Sbjct: 1213534 gataaaagtttcacctttatcttgaagacccctcctgcctcagtccttctcctcaaggca 1213475

                       
Query: 235     gcaggtgt 242
               ||||||||
Sbjct: 1213474 gcaggtgt 1213467

---

>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
               sequence
          Length = 36192742

 Score =  212 bits (107), Expect = 5e-52
 Identities = 158/175 (90%)
 Strand = Plus / Minus

                                                                           
Query: 1       gtggtgggcatcataaagctggcgctggaggcgggcaaggcgacgcccgcgccacccgtc 60
               ||||||||| |||||||||||||||||||||| || ||||| ||||| ||||| || |||
Sbjct: 1213803 gtggtgggcctcataaagctggcgctggaggccgggaaggccacgccggcgccgccggtc 1213744

                                                                           
Query: 61      ggaccggcgctcggtgccaagggtgtgaacatcatggccttctgtaaggattacaatgcc 120
               || || ||||| |||||||||||||||||||||||| ||||||| ||||| |||||||||
Sbjct: 1213743 ggccccgcgcttggtgccaagggtgtgaacatcatgtccttctgcaaggagtacaatgcc 1213684

                                                                      
Query: 121     aagacggccgacaagcccggctacattatccccgtcgagatcaccgtgttcgatg 175
               ||||||||||| ||| |||||||||| ||||| ||||||||||||||||||||||
Sbjct: 1213683 aagacggccgagaaggccggctacatcatccctgtcgagatcaccgtgttcgatg 1213629



 Score = 71.9 bits (36), Expect = 1e-09
 Identities = 60/68 (88%)
 Strand = Plus / Minus

                                                                           
Query: 175     gataagagcttcacctttatcctcaagacacctcctgcctcagtactgctcctcaaggct 234
               ||||| || |||||||||||| | ||||| |||||||||||||| || ||||||||||| 
Sbjct: 1213532 gataaaagtttcacctttatcttgaagacccctcctgcctcagtccttctcctcaaggca 1213473

                       
Query: 235     gcaggtgt 242
               ||||||||
Sbjct: 1213472 gcaggtgt 1213465

---

>gb|AC098695.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OJ1126B12,
             complete sequence
          Length = 146241

 Score =  212 bits (107), Expect = 5e-52
 Identities = 158/175 (90%)
 Strand = Plus / Minus

                                                                         
Query: 1     gtggtgggcatcataaagctggcgctggaggcgggcaaggcgacgcccgcgccacccgtc 60
             ||||||||| |||||||||||||||||||||| || ||||| ||||| ||||| || |||
Sbjct: 18707 gtggtgggcctcataaagctggcgctggaggccgggaaggccacgccggcgccgccggtc 18648

                                                                         
Query: 61    ggaccggcgctcggtgccaagggtgtgaacatcatggccttctgtaaggattacaatgcc 120
             || || ||||| |||||||||||||||||||||||| ||||||| ||||| |||||||||
Sbjct: 18647 ggccccgcgcttggtgccaagggtgtgaacatcatgtccttctgcaaggagtacaatgcc 18588

                                                                    
Query: 121   aagacggccgacaagcccggctacattatccccgtcgagatcaccgtgttcgatg 175
             ||||||||||| ||| |||||||||| ||||| ||||||||||||||||||||||
Sbjct: 18587 aagacggccgagaaggccggctacatcatccctgtcgagatcaccgtgttcgatg 18533



 Score = 71.9 bits (36), Expect = 1e-09
 Identities = 60/68 (88%)
 Strand = Plus / Minus

                                                                         
Query: 175   gataagagcttcacctttatcctcaagacacctcctgcctcagtactgctcctcaaggct 234
             ||||| || |||||||||||| | ||||| |||||||||||||| || ||||||||||| 
Sbjct: 18436 gataaaagtttcacctttatcttgaagacccctcctgcctcagtccttctcctcaaggca 18377

                     
Query: 235   gcaggtgt 242
             ||||||||
Sbjct: 18376 gcaggtgt 18369

---

>gb|AC158183.2| Selaginella moellendorffii clone JGIASXY-5D8, complete sequence
          Length = 39479

 Score =  125 bits (63), Expect = 9e-26
 Identities = 114/131 (87%)
 Strand = Plus / Minus

                                                                         
Query: 31    gcgggcaaggcgacgcccgcgccacccgtcggaccggcgctcggtgccaagggtgtgaac 90
             ||||||||||||||||| || || || ||||| || || || ||| ||||||| || |||
Sbjct: 33832 gcgggcaaggcgacgccggctcctccggtcggccctgctctgggttccaagggcgttaac 33773

                                                                         
Query: 91    atcatggccttctgtaaggattacaatgccaagacggccgacaagcccggctacattatc 150
             |||||||||||||| ||||| ||||| |||| ||||||||||||| ||||||||||||||
Sbjct: 33772 atcatggccttctgcaaggaatacaacgccaggacggccgacaaggccggctacattatc 33713

                        
Query: 151   cccgtcgagat 161
             ||||| |||||
Sbjct: 33712 cccgtggagat 33702



 Score = 67.9 bits (34), Expect = 2e-08
 Identities = 58/66 (87%)
 Strand = Plus / Minus

                                                                         
Query: 175   gataagagcttcacctttatcctcaagacacctcctgcctcagtactgctcctcaaggct 234
             ||||||||||||||||| ||||||||||||||||| || ||||| || ||||| || || 
Sbjct: 33636 gataagagcttcaccttcatcctcaagacacctccggcgtcagtgctactccttaaagcc 33577

                   
Query: 235   gcaggt 240
             ||||||
Sbjct: 33576 gcaggt 33571

---

>ref|NM_103032.2| Arabidopsis thaliana PRPL11 (PLASTID RIBOSOMAL PROTEIN L11);
           structural constituent of ribosome AT1G32990 (PRPL11)
           mRNA, complete cds
          Length = 853

 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 47/53 (88%)
 Strand = Plus / Plus

                                                                
Query: 160 atcaccgtgttcgatgataagagcttcacctttatcctcaagacacctcctgc 212
           ||||| || |||||||||||||||||||| ||||| |||||||| || |||||
Sbjct: 418 atcactgtcttcgatgataagagcttcacgtttattctcaagaccccgcctgc 470

---

>gb|AY063070.1| Arabidopsis thaliana putative ribosomal protein L11 (At1g32990)
           mRNA, complete cds
          Length = 700

 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 47/53 (88%)
 Strand = Plus / Plus

                                                                
Query: 160 atcaccgtgttcgatgataagagcttcacctttatcctcaagacacctcctgc 212
           ||||| || |||||||||||||||||||| ||||| |||||||| || |||||
Sbjct: 379 atcactgtcttcgatgataagagcttcacgtttattctcaagaccccgcctgc 431

---

>emb|X56615.1|SORPL11 S.oleracea mRNA for chloroplast ribosomal protein L11
          Length = 836

 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 194/249 (77%)
 Strand = Plus / Plus

                                                                       
Query: 19  ctggcgctggaggcgggcaaggcgacgcccgcgccacccgtcggaccggcgctcggtgcc 78
           |||||| ||||||| || || ||||| || || ||||| || ||||| ||||| ||| | 
Sbjct: 246 ctggcgttggaggctggaaaagcgacaccggcaccaccagtgggacctgcgctgggttca 305

                                                                       
Query: 79  aagggtgtgaacatcatggccttctgtaaggattacaatgccaagacggccgacaagccc 138
           ||||||||||| || ||||| || || |||||||| ||||| |  || || || || |||
Sbjct: 306 aagggtgtgaatataatggcgttttgcaaggattataatgctagaactgctgataaaccc 365

                                                                       
Query: 139 ggctacattatccccgtcgagatcaccgtgttcgatgataagagcttcacctttatcctc 198
           || | | |||| || || ||||||||||| || |||||||| || || || || ||  | 
Sbjct: 366 ggtttcgttattcctgttgagatcaccgtttttgatgataaaagttttactttcattttg 425

                                                                       
Query: 199 aagacacctcctgcctcagtactgctcctcaaggctgcaggtgtcgaaaaaggctcaaag 258
           ||||| || ||||| || || || || || |||||| ||||||  |||||||| ||||||
Sbjct: 426 aagactccacctgcatctgttcttcttctgaaggcttcaggtgcggaaaaaggatcaaag 485

                    
Query: 259 gagccacaa 267
           || ||||||
Sbjct: 486 gatccacaa 494

---

>gb|AF370254.1| Arabidopsis thaliana putative ribosomal protein L11 (At1g32990)
           mRNA, complete cds
          Length = 827

 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 47/53 (88%)
 Strand = Plus / Plus

                                                                
Query: 160 atcaccgtgttcgatgataagagcttcacctttatcctcaagacacctcctgc 212
           ||||| || |||||||||||||||||||| ||||| |||||||| || |||||
Sbjct: 414 atcactgtcttcgatgataagagcttcacgtttattctcaagaccccgcctgc 466

---

>gb|CP000240.1| Synechococcus sp. JA-2-3B'a(2-13), complete genome
          Length = 3046682

 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 38/41 (92%)
 Strand = Plus / Plus

                                                        
Query: 88      aacatcatggccttctgtaaggattacaatgccaagacggc 128
               |||||||||||||| |||||||| ||||| |||||||||||
Sbjct: 1264879 aacatcatggccttttgtaaggagtacaacgccaagacggc 1264919

---

>gb|AF412105.1|AF412105 Arabidopsis thaliana At1g32990/F9L11_15 mRNA, complete cds
          Length = 828

 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 47/53 (88%)
 Strand = Plus / Plus

                                                                
Query: 160 atcaccgtgttcgatgataagagcttcacctttatcctcaagacacctcctgc 212
           ||||| || |||||||||||||||||||| ||||| |||||||| || |||||
Sbjct: 415 atcactgtcttcgatgataagagcttcacgtttattctcaagaccccgcctgc 467

---

>gb|AF325023.2|AF325023 Arabidopsis thaliana At1g32990 (At1g32990/F9L11_15) mRNA, complete
           cds
          Length = 844

 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 47/53 (88%)
 Strand = Plus / Plus

                                                                
Query: 160 atcaccgtgttcgatgataagagcttcacctttatcctcaagacacctcctgc 212
           ||||| || |||||||||||||||||||| ||||| |||||||| || |||||
Sbjct: 414 atcactgtcttcgatgataagagcttcacgtttattctcaagaccccgcctgc 466

---

>gb|AY085664.1| Arabidopsis thaliana clone 16773 mRNA, complete sequence
          Length = 819

 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 47/53 (88%)
 Strand = Plus / Plus

                                                                
Query: 160 atcaccgtgttcgatgataagagcttcacctttatcctcaagacacctcctgc 212
           ||||| || |||||||||||||||||||| ||||| |||||||| || |||||
Sbjct: 418 atcactgtcttcgatgataagagcttcacgtttattctcaagaccccgcctgc 470

---

>dbj|AP008231.1| Synechococcus elongatus PCC 6301 DNA, complete genome
          Length = 2696255

 Score = 50.1 bits (25), Expect = 0.004
 Identities = 28/29 (96%)
 Strand = Plus / Plus

                                           
Query: 88     aacatcatggccttctgtaaggattacaa 116
              ||||||||||||||||||||||| |||||
Sbjct: 994680 aacatcatggccttctgtaaggagtacaa 994708

---

>gb|AE017285.1| Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough, complete genome
          Length = 3570858

 Score = 50.1 bits (25), Expect = 0.004
 Identities = 37/41 (90%)
 Strand = Plus / Plus

                                                        
Query: 86      tgaacatcatggccttctgtaaggattacaatgccaagacg 126
               ||||||||||||| ||||| ||||| | |||||||||||||
Sbjct: 3021944 tgaacatcatggcgttctgcaaggagttcaatgccaagacg 3021984

---

>gb|CP000100.1| Synechococcus elongatus PCC 7942, complete genome
          Length = 2695903

 Score = 50.1 bits (25), Expect = 0.004
 Identities = 28/29 (96%)
 Strand = Plus / Minus

                                           
Query: 88     aacatcatggccttctgtaaggattacaa 116
              ||||||||||||||||||||||| |||||
Sbjct: 626192 aacatcatggccttctgtaaggagtacaa 626164

---

>ref|NM_124540.1| Arabidopsis thaliana structural constituent of ribosome AT5G51610
           mRNA, complete cds
          Length = 549

 Score = 48.1 bits (24), Expect = 0.017
 Identities = 30/32 (93%)
 Strand = Plus / Plus

                                           
Query: 179 agagcttcacctttatcctcaagacacctcct 210
           |||||||||| |||||||||||||| ||||||
Sbjct: 278 agagcttcacttttatcctcaagacccctcct 309

---

>gb|CP000239.1| Synechococcus sp. JA-3-3Ab, complete genome
          Length = 2932766

 Score = 48.1 bits (24), Expect = 0.017
 Identities = 39/44 (88%)
 Strand = Plus / Plus

                                                           
Query: 88      aacatcatggccttctgtaaggattacaatgccaagacggccga 131
               ||||||||||||||||| ||||| || || ||||| ||||||||
Sbjct: 1783550 aacatcatggccttctgcaaggaatataacgccaaaacggccga 1783593

---

>gb|AF184768.1|AF184768 Arabidopsis thaliana inhibitor tagged site ITS1 genomic sequence
          Length = 804

 Score = 48.1 bits (24), Expect = 0.017
 Identities = 30/32 (93%)
 Strand = Plus / Plus

                                           
Query: 179 agagcttcacctttatcctcaagacacctcct 210
           |||||||||| |||||||||||||| ||||||
Sbjct: 264 agagcttcacttttatcctcaagacccctcct 295

---

>dbj|AB018109.1| Arabidopsis thaliana genomic DNA, chromosome 5, TAC clone:K17N15
          Length = 81293

 Score = 48.1 bits (24), Expect = 0.017
 Identities = 30/32 (93%)
 Strand = Plus / Plus

                                             
Query: 179   agagcttcacctttatcctcaagacacctcct 210
             |||||||||| |||||||||||||| ||||||
Sbjct: 64846 agagcttcacttttatcctcaagacccctcct 64877

---

>gb|CP000115.1| Nitrobacter winogradskyi Nb-255, complete genome
          Length = 3402093

 Score = 44.1 bits (22), Expect = 0.27
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                        
Query: 16     aagctggcgctggaggcgggcaaggc 41
              ||||||||||||||||||||| ||||
Sbjct: 600116 aagctggcgctggaggcgggcgaggc 600141

---

>emb|X87296.1|ATRPL11GE A.thaliana rpl11 gene
          Length = 4764

 Score = 44.1 bits (22), Expect = 0.27
 Identities = 34/38 (89%)
 Strand = Plus / Plus

                                                  
Query: 175  gataagagcttcacctttatcctcaagacacctcctgc 212
            |||||||||||||| ||||| |||||||| || |||||
Sbjct: 3276 gataagagcttcacgtttattctcaagaccccgcctgc 3313

---

>emb|BX640438.1| Bordetella bronchiseptica strain RB50, complete genome; segment 2/16
          Length = 347786

 Score = 44.1 bits (22), Expect = 0.27
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 18     gctggcgctggaggcgggcaag 39
              ||||||||||||||||||||||
Sbjct: 114531 gctggcgctggaggcgggcaag 114552

---

>emb|BX640424.1| Bordetella parapertussis strain 12822, complete genome; segment 2/14
          Length = 349146

 Score = 44.1 bits (22), Expect = 0.27
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 18     gctggcgctggaggcgggcaag 39
              ||||||||||||||||||||||
Sbjct: 118488 gctggcgctggaggcgggcaag 118509

---

>emb|BX640412.1| Bordetella pertussis strain Tohama I, complete genome; segment 2/12
          Length = 348171

 Score = 44.1 bits (22), Expect = 0.27
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 18     gctggcgctggaggcgggcaag 39
              ||||||||||||||||||||||
Sbjct: 179522 gctggcgctggaggcgggcaag 179543

---

>gb|AC006424.5|AC006424 Arabidopsis thaliana chromosome I BAC F9L11 genomic sequence, complete
             sequence
          Length = 122836

 Score = 44.1 bits (22), Expect = 0.27
 Identities = 34/38 (89%)
 Strand = Plus / Plus

                                                   
Query: 175   gataagagcttcacctttatcctcaagacacctcctgc 212
             |||||||||||||| ||||| |||||||| || |||||
Sbjct: 76056 gataagagcttcacgtttattctcaagaccccgcctgc 76093

---

>gb|AE014295.3| Bifidobacterium longum NCC2705, complete genome
          Length = 2256640

 Score = 44.1 bits (22), Expect = 0.27
 Identities = 37/42 (88%)
 Strand = Plus / Plus

                                                         
Query: 85      gtgaacatcatggccttctgtaaggattacaatgccaagacg 126
               ||||||||||||| |||||| ||||  ||||||||| |||||
Sbjct: 1907293 gtgaacatcatggacttctgcaaggcatacaatgcccagacg 1907334

---

>emb|X73005.1|SPC6RPL1A Synechocystis PCC6803 genes for ribosomal protein L11 and L1
          Length = 1467

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                        
Query: 184 ttcacctttatcctcaagacacctcctgc 212
           ||||||||||||||||| || ||||||||
Sbjct: 387 ttcacctttatcctcaaaactcctcctgc 415

---

>emb|BX640439.1| Bordetella bronchiseptica strain RB50, complete genome; segment 3/16
          Length = 346362

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 17    agctggcgctggaggcgggca 37
             |||||||||||||||||||||
Sbjct: 76572 agctggcgctggaggcgggca 76592

---

>dbj|BA000022.2| Synechocystis sp. PCC 6803 DNA, complete genome
          Length = 3573470

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                           
Query: 184    ttcacctttatcctcaagacacctcctgc 212
              ||||||||||||||||| || ||||||||
Sbjct: 925119 ttcacctttatcctcaaaactcctcctgc 925091

---

>dbj|AP006840.1| Symbiobacterium thermophilum IAM 14863 DNA, complete genome
          Length = 3566135

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 81/101 (80%)
 Strand = Plus / Minus

                                                                           
Query: 16      aagctggcgctggaggcgggcaaggcgacgcccgcgccacccgtcggaccggcgctcggt 75
               ||||||||||||   ||||| || ||||| || ||||| |||||||| ||||| || || 
Sbjct: 3292054 aagctggcgctgccagcggggaaagcgaccccggcgccgcccgtcggtccggccctgggc 3291995

                                                        
Query: 76      gccaagggtgtgaacatcatggccttctgtaaggattacaa 116
               ||  | || || ||||||||||| ||||| ||||| |||||
Sbjct: 3291994 gcgcacggcgtcaacatcatggcgttctgcaaggagtacaa 3291954

---

>gb|CP000024.1| Streptococcus thermophilus CNRZ1066, complete genome
          Length = 1796226

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 232     gctgcaggtgtcgaaaaaggctca 255
               ||||||||||| ||||||||||||
Sbjct: 1629772 gctgcaggtgttgaaaaaggctca 1629749

---

>gb|CP000358.1| Deinococcus geothermalis DSM 11300 plasmid 1, complete sequence
          Length = 574126

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 18     gctggcgctggaggcgggcaaggc 41
              |||||||||||| |||||||||||
Sbjct: 293379 gctggcgctggacgcgggcaaggc 293402

---

>gb|CP000262.1| Streptococcus pyogenes MGAS10750, complete genome
          Length = 1937111

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 232    gctgcaggtgtcgaaaaaggctca 255
              ||||||||||| ||||||||||||
Sbjct: 379459 gctgcaggtgttgaaaaaggctca 379482

---

>gb|AC124547.4| Mus musculus BAC clone RP23-274I8 from chromosome 1, complete sequence
          Length = 225058

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 181   agcttcacctttatcctcaa 200
             ||||||||||||||||||||
Sbjct: 16108 agcttcacctttatcctcaa 16089

---

>ref|XM_756704.1| Ustilago maydis 521 hypothetical protein (UM05650.1) partial mRNA
          Length = 1527

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                           
Query: 55  cccgtcggaccggcgctcggtgccaagggtgt 86
           ||||||||||| ||||||||||| || |||||
Sbjct: 91  cccgtcggacctgcgctcggtgctaaaggtgt 122

---

>gb|AC000353.27| Homo sapiens Chromosome 11q13 BAC Clone 18h3, complete sequence
          Length = 233089

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 216    agtactgctcctcaaggctgcagg 239
              ||||||||||| ||||||||||||
Sbjct: 128332 agtactgctccccaaggctgcagg 128309

---

>gb|AE017282.2| Methylococcus capsulatus str. Bath, complete genome
          Length = 3304561

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 30      ggcgggcaaggcgacgcccg 49
               ||||||||||||||||||||
Sbjct: 2345811 ggcgggcaaggcgacgcccg 2345792

---

>gb|AC012456.10| Homo sapiens BAC clone RP11-484O9 from 2, complete sequence
          Length = 174157

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 17    agctggcgctggaggcgggc 36
             ||||||||||||||||||||
Sbjct: 41347 agctggcgctggaggcgggc 41328

---

>gb|AC117396.2| Homo sapiens 3 BAC RP11-89E16 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 147103

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 272   agaaggttggaaaggtgact 291
             ||||||||||||||||||||
Sbjct: 74010 agaaggttggaaaggtgact 73991

---

>gb|AY220877.1| Homo sapiens requiem, apoptosis response zinc finger gene (REQ) gene,
            complete cds
          Length = 20369

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 216  agtactgctcctcaaggctgcagg 239
            ||||||||||| ||||||||||||
Sbjct: 6558 agtactgctccccaaggctgcagg 6535

---

>gb|AC124566.5| Mus musculus BAC clone RP23-144N15 from 7, complete sequence
          Length = 181231

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 94     atggccttctgtaaggatta 113
              ||||||||||||||||||||
Sbjct: 107777 atggccttctgtaaggatta 107796

---

>dbj|AP000944.4| Homo sapiens genomic DNA, chromosome 11 clone:RP11-867O8, complete
             sequence
          Length = 219246

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 216   agtactgctcctcaaggctgcagg 239
             ||||||||||| ||||||||||||
Sbjct: 81249 agtactgctccccaaggctgcagg 81226

---

>emb|CT573093.3| CH250-1K10, complete sequence
          Length = 185363

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                          
Query: 258    ggagccacaacgtgagaaggttggaaag 285
              ||||||| ||| ||||||||||||||||
Sbjct: 121342 ggagccaaaacctgagaaggttggaaag 121315

---

>gb|CP000085.1| Burkholderia thailandensis E264 chromosome II, complete sequence
          Length = 2914771

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 39     ggcgacgcccgcgccacccg 58
              ||||||||||||||||||||
Sbjct: 610381 ggcgacgcccgcgccacccg 610362

---

>gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. k10, complete genome
          Length = 4829781

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 148     atccccgtcgagatcaccgt 167
               ||||||||||||||||||||
Sbjct: 4583658 atccccgtcgagatcaccgt 4583677

---

>gb|AE000520.1| Treponema pallidum subsp. pallidum str. Nichols complete genome
          Length = 1138011

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 34     ggcaaggcgacgcccgcgcc 53
              ||||||||||||||||||||
Sbjct: 243214 ggcaaggcgacgcccgcgcc 243233

---

>gb|U43920.1|HSU43920 Human ubi-d4 gene, partial cds
          Length = 291

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 216 agtactgctcctcaaggctgcagg 239
           ||||||||||| ||||||||||||
Sbjct: 94  agtactgctccccaaggctgcagg 71

---

>gb|CP000023.1| Streptococcus thermophilus LMG 18311, complete genome
          Length = 1796846

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 232     gctgcaggtgtcgaaaaaggctca 255
               ||||||||||| ||||||||||||
Sbjct: 1627461 gctgcaggtgttgaaaaaggctca 1627438


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,888,757
Number of Sequences: 3902068
Number of extensions: 2888757
Number of successful extensions: 47847
Number of sequences better than 10.0: 51
Number of HSP's better than 10.0 without gapping: 50
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 47451
Number of HSP's gapped (non-prelim): 397
length of query: 320
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 298
effective length of database: 17,147,199,772
effective search space: 5109865532056
effective search space used: 5109865532056
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)

---