ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name baak4e14
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1PA2A_PSEAU (P20255) Phospholipase A2 isozyme PA-12A (EC 3.1.1.4)... 28 5.0
2STX7_MOUSE (O70439) Syntaxin-7 28 6.5
3PA21B_PSEAU (P04056) Phospholipase A2 isozyme PA-11 (EC 3.1.1.4)... 28 8.5
4ACCO_ACTCH (P31237) 1-aminocyclopropane-1-carboxylate oxidase (E... 28 8.5
5COAC_STRMU (Q54433) Probable phosphopantothenoylcysteine decarbo... 28 8.5

>PA2A_PSEAU (P20255) Phospholipase A2 isozyme PA-12A (EC 3.1.1.4)|
           (Phosphatidylcholine 2-acylhydrolase)
          Length = 118

 Score = 28.5 bits (62), Expect = 5.0
 Identities = 15/48 (31%), Positives = 24/48 (50%), Gaps = 9/48 (18%)
 Frame = -1

Query: 159 EKSGSTDCIPNLLIIHIR--------DSMT-CRSYICFCWAISRNCFA 43
           E++G   C P L +   +        +S T C+S++C C A +  CFA
Sbjct: 53  EQAGKKGCFPKLTLYSWKCTGNVPTCNSKTGCKSFVCACDAAAAKCFA 100



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>STX7_MOUSE (O70439) Syntaxin-7|
          Length = 260

 Score = 28.1 bits (61), Expect = 6.5
 Identities = 12/48 (25%), Positives = 24/48 (50%)
 Frame = +2

Query: 38  REAKQFREMAQQKQMYDRQVIESLMWMINKFGIQSVEPDFSSERAVSE 181
           +++ + R++ QQKQ Y  Q+ +     I +FG     P    +R + +
Sbjct: 42  QDSPELRQLLQQKQQYTNQLAKETDKYIKEFGSLPTTPSEQRQRKIQK 89



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>PA21B_PSEAU (P04056) Phospholipase A2 isozyme PA-11 (EC 3.1.1.4)|
           (Phosphatidylcholine 2-acylhydrolase)
          Length = 118

 Score = 27.7 bits (60), Expect = 8.5
 Identities = 13/48 (27%), Positives = 21/48 (43%), Gaps = 9/48 (18%)
 Frame = -1

Query: 159 EKSGSTDCIPNLLIIHIR---------DSMTCRSYICFCWAISRNCFA 43
           E++G   C P L +   +             C+S++C C A +  CFA
Sbjct: 53  EQAGKKGCFPKLTLYSWKCTGNVPTCNSKPGCKSFVCACDAAAAKCFA 100



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>ACCO_ACTCH (P31237) 1-aminocyclopropane-1-carboxylate oxidase (EC 1.14.17.4)|
           (ACC oxidase) (Ethylene-forming enzyme) (EFE)
          Length = 319

 Score = 27.7 bits (60), Expect = 8.5
 Identities = 14/40 (35%), Positives = 22/40 (55%)
 Frame = +2

Query: 56  REMAQQKQMYDRQVIESLMWMINKFGIQSVEPDFSSERAV 175
           +E  QQKQ+Y + V E  M +      Q+ EP F + +A+
Sbjct: 268 KEEDQQKQVYPKFVFEDYMKLYAGLKFQAKEPRFEAMKAM 307



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>COAC_STRMU (Q54433) Probable phosphopantothenoylcysteine decarboxylase (EC|
           4.1.1.36) (PPCDC)
          Length = 179

 Score = 27.7 bits (60), Expect = 8.5
 Identities = 15/50 (30%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
 Frame = +2

Query: 14  VTXKAL-VEREAKQFREMAQQKQMYDRQVIESLMWMINKFGIQSVEPDFS 160
           VT  AL +  E  +F   A   +MY+  + +S + ++ KFG + ++P  S
Sbjct: 104 VTSVALALPLEVPKFFAPAMNTKMYENPITQSNIALLKKFGYKEIQPKSS 153


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,922,446
Number of Sequences: 219361
Number of extensions: 215474
Number of successful extensions: 951
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 940
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 951
length of database: 80,573,946
effective HSP length: 47
effective length of database: 70,263,979
effective search space used: 1686335496
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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