ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | baak4e14 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_472768.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 912 Score = 111 bits (56), Expect = 9e-22 Identities = 68/72 (94%) Strand = Plus / Plus Query: 23 aaggcgctggtggagcgtgaggcgaagcagttccgggagatggcccagcagaagcagatg 82 ||||||||||||||||| |||||| |||||||||||||||||| ||||||||||||||| Sbjct: 724 aaggcgctggtggagcgcgaggcgcggcagttccgggagatggcgcagcagaagcagatg 783 Query: 83 tacgaccggcag 94 |||||||||||| Sbjct: 784 tacgaccggcag 795 Score = 54.0 bits (27), Expect = 2e-04 Identities = 39/43 (90%) Strand = Plus / Plus Query: 161 tccgagcgagccgtgtcagagacaagcgaggacgaccgagaca 203 |||||||| |||||||| ||||| |||||||||||| |||||| Sbjct: 862 tccgagcgggccgtgtcggagaccagcgaggacgacagagaca 904
>emb|BX842605.1|OSJN00299 Oryza sativa genomic DNA, chromosome 4, BAC clone: B1358B12, complete sequence Length = 131246 Score = 111 bits (56), Expect = 9e-22 Identities = 68/72 (94%) Strand = Plus / Plus Query: 23 aaggcgctggtggagcgtgaggcgaagcagttccgggagatggcccagcagaagcagatg 82 ||||||||||||||||| |||||| |||||||||||||||||| ||||||||||||||| Sbjct: 100460 aaggcgctggtggagcgcgaggcgcggcagttccgggagatggcgcagcagaagcagatg 100519 Query: 83 tacgaccggcag 94 |||||||||||| Sbjct: 100520 tacgaccggcag 100531 Score = 54.0 bits (27), Expect = 2e-04 Identities = 39/43 (90%) Strand = Plus / Plus Query: 161 tccgagcgagccgtgtcagagacaagcgaggacgaccgagaca 203 |||||||| |||||||| ||||| |||||||||||| |||||| Sbjct: 100598 tccgagcgggccgtgtcggagaccagcgaggacgacagagaca 100640
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 111 bits (56), Expect = 9e-22 Identities = 68/72 (94%) Strand = Plus / Plus Query: 23 aaggcgctggtggagcgtgaggcgaagcagttccgggagatggcccagcagaagcagatg 82 ||||||||||||||||| |||||| |||||||||||||||||| ||||||||||||||| Sbjct: 23104120 aaggcgctggtggagcgcgaggcgcggcagttccgggagatggcgcagcagaagcagatg 23104179 Query: 83 tacgaccggcag 94 |||||||||||| Sbjct: 23104180 tacgaccggcag 23104191 Score = 54.0 bits (27), Expect = 2e-04 Identities = 39/43 (90%) Strand = Plus / Plus Query: 161 tccgagcgagccgtgtcagagacaagcgaggacgaccgagaca 203 |||||||| |||||||| ||||| |||||||||||| |||||| Sbjct: 23104258 tccgagcgggccgtgtcggagaccagcgaggacgacagagaca 23104300
>emb|AL512547.2| Oryza sativa genomic DNA, chromosome 4, BAC clone: B0812A04, complete sequence Length = 43144 Score = 111 bits (56), Expect = 9e-22 Identities = 68/72 (94%) Strand = Plus / Plus Query: 23 aaggcgctggtggagcgtgaggcgaagcagttccgggagatggcccagcagaagcagatg 82 ||||||||||||||||| |||||| |||||||||||||||||| ||||||||||||||| Sbjct: 25041 aaggcgctggtggagcgcgaggcgcggcagttccgggagatggcgcagcagaagcagatg 25100 Query: 83 tacgaccggcag 94 |||||||||||| Sbjct: 25101 tacgaccggcag 25112 Score = 54.0 bits (27), Expect = 2e-04 Identities = 39/43 (90%) Strand = Plus / Plus Query: 161 tccgagcgagccgtgtcagagacaagcgaggacgaccgagaca 203 |||||||| |||||||| ||||| |||||||||||| |||||| Sbjct: 25179 tccgagcgggccgtgtcggagaccagcgaggacgacagagaca 25221
>gb|BT016871.1| Zea mays clone Contig704 mRNA sequence Length = 1384 Score = 79.8 bits (40), Expect = 3e-12 Identities = 85/100 (85%) Strand = Plus / Minus Query: 23 aaggcgctggtggagcgtgaggcgaagcagttccgggagatggcccagcagaagcagatg 82 ||||||||||||||| | |||||| ||| |||| ||||||| ||||||||||||||| Sbjct: 479 aaggcgctggtggagagggaggcgcggcaattccaggagatgatgcagcagaagcagatg 420 Query: 83 tacgaccggcaggtcatcgagtctcttatgtggatgatca 122 || ||||||||||| |||||||| ||| |||| |||||| Sbjct: 419 tatgaccggcaggtgatcgagtcacttcagtgggtgatca 380
>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome Length = 9025608 Score = 44.1 bits (22), Expect = 0.18 Identities = 31/34 (91%) Strand = Plus / Plus Query: 85 cgaccggcaggtcatcgagtctcttatgtggatg 118 |||||||||||||||||| ||||| ||| ||||| Sbjct: 63732 cgaccggcaggtcatcgactctctgatgcggatg 63765
>gb|BT018889.1| Zea mays clone EL01T0205H07.d mRNA sequence Length = 1720 Score = 40.1 bits (20), Expect = 2.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 61 gatggcccagcagaagcaga 80 |||||||||||||||||||| Sbjct: 892 gatggcccagcagaagcaga 873
>gb|AC025447.5| Homo sapiens chromosome 5 clone CTD-2085H24, complete sequence Length = 117543 Score = 40.1 bits (20), Expect = 2.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 33 tggagcgtgaggcgaagcag 52 |||||||||||||||||||| Sbjct: 92022 tggagcgtgaggcgaagcag 92041
>gb|AC010368.4|AC010368 Homo sapiens chromosome 5 clone CTD-2046J7, complete sequence Length = 149307 Score = 40.1 bits (20), Expect = 2.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 33 tggagcgtgaggcgaagcag 52 |||||||||||||||||||| Sbjct: 66888 tggagcgtgaggcgaagcag 66869
>dbj|AK216217.1| Mus musculus cDNA, clone:Y2G0137J20, strand:plus, reference:ENSEMBL:Mouse-Transcript- ENST:ENSMUST00000060457, based on BLAT search Length = 387 Score = 40.1 bits (20), Expect = 2.7 Identities = 26/28 (92%) Strand = Plus / Plus Query: 47 aagcagttccgggagatggcccagcaga 74 |||||||||||||||||| |||||||| Sbjct: 247 aagcagttccgggagatgatccagcaga 274
>emb|AL928832.7| Mouse DNA sequence from clone RP23-261N18 on chromosome 2, complete sequence Length = 198993 Score = 40.1 bits (20), Expect = 2.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 61 gatggcccagcagaagcagatgta 84 |||||| ||||||||||||||||| Sbjct: 39957 gatggctcagcagaagcagatgta 39934 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 1,122,268 Number of Sequences: 3902068 Number of extensions: 1122268 Number of successful extensions: 80767 Number of sequences better than 10.0: 11 Number of HSP's better than 10.0 without gapping: 11 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 80637 Number of HSP's gapped (non-prelim): 130 length of query: 216 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 194 effective length of database: 17,147,199,772 effective search space: 3326556755768 effective search space used: 3326556755768 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
