ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | baak4e13 |
|---|---|
| Clone Library Name | barley_pub |
>ref|NM_185109.1| Oryza sativa (japonica cultivar-group), mRNA Length = 681 Score = 133 bits (67), Expect = 3e-28 Identities = 126/147 (85%) Strand = Plus / Plus Query: 73 tctaatcagttatatcagttcgatcatgacattgatggagggngatgtgatattaactgg 132 |||||| |||||||||||||| ||||||||||| |||||||| ||||| ||| | || || Sbjct: 507 tctaataagttatatcagttccatcatgacattaatggagggtgatgttatactgaccgg 566 Query: 133 tnctcctgagggtgtaggccctgtccgaatagggcanaanatcaaagctggtataactgg 192 | ||||||||||||||||||| || ||| ||| || || ||||||||||||||||| || Sbjct: 567 tactcctgagggtgtaggcccagtacgaccaggacagaagatcaaagctggtataaccgg 626 Query: 193 cctcatcgaggccgagtttgatgttca 219 |||||| || | |||||||||||||| Sbjct: 627 cctcattgatgttgagtttgatgttca 653
>dbj|AK121596.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033039E19, full insert sequence Length = 926 Score = 133 bits (67), Expect = 3e-28 Identities = 126/147 (85%) Strand = Plus / Plus Query: 73 tctaatcagttatatcagttcgatcatgacattgatggagggngatgtgatattaactgg 132 |||||| |||||||||||||| ||||||||||| |||||||| ||||| ||| | || || Sbjct: 575 tctaataagttatatcagttccatcatgacattaatggagggtgatgttatactgaccgg 634 Query: 133 tnctcctgagggtgtaggccctgtccgaatagggcanaanatcaaagctggtataactgg 192 | ||||||||||||||||||| || ||| ||| || || ||||||||||||||||| || Sbjct: 635 tactcctgagggtgtaggcccagtacgaccaggacagaagatcaaagctggtataaccgg 694 Query: 193 cctcatcgaggccgagtttgatgttca 219 |||||| || | |||||||||||||| Sbjct: 695 cctcattgatgttgagtttgatgttca 721
>dbj|AK109501.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-207-H12, full insert sequence Length = 999 Score = 133 bits (67), Expect = 3e-28 Identities = 126/147 (85%) Strand = Plus / Plus Query: 73 tctaatcagttatatcagttcgatcatgacattgatggagggngatgtgatattaactgg 132 |||||| |||||||||||||| ||||||||||| |||||||| ||||| ||| | || || Sbjct: 551 tctaataagttatatcagttccatcatgacattaatggagggtgatgttatactgaccgg 610 Query: 133 tnctcctgagggtgtaggccctgtccgaatagggcanaanatcaaagctggtataactgg 192 | ||||||||||||||||||| || ||| ||| || || ||||||||||||||||| || Sbjct: 611 tactcctgagggtgtaggcccagtacgaccaggacagaagatcaaagctggtataaccgg 670 Query: 193 cctcatcgaggccgagtttgatgttca 219 |||||| || | |||||||||||||| Sbjct: 671 cctcattgatgttgagtttgatgttca 697
>dbj|AK071107.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023076A13, full insert sequence Length = 1112 Score = 133 bits (67), Expect = 3e-28 Identities = 126/147 (85%) Strand = Plus / Plus Query: 73 tctaatcagttatatcagttcgatcatgacattgatggagggngatgtgatattaactgg 132 |||||| |||||||||||||| ||||||||||| |||||||| ||||| ||| | || || Sbjct: 588 tctaataagttatatcagttccatcatgacattaatggagggtgatgttatactgaccgg 647 Query: 133 tnctcctgagggtgtaggccctgtccgaatagggcanaanatcaaagctggtataactgg 192 | ||||||||||||||||||| || ||| ||| || || ||||||||||||||||| || Sbjct: 648 tactcctgagggtgtaggcccagtacgaccaggacagaagatcaaagctggtataaccgg 707 Query: 193 cctcatcgaggccgagtttgatgttca 219 |||||| || | |||||||||||||| Sbjct: 708 cctcattgatgttgagtttgatgttca 734
>gb|AY105252.1| Zea mays PCO067797 mRNA sequence Length = 1003 Score = 123 bits (62), Expect = 2e-25 Identities = 109/126 (86%) Strand = Plus / Plus Query: 66 ttccttttctaatcagttatatcagttcgatcatgacattgatggagggngatgtgatat 125 |||||||||| || || ||||||||||| ||||||||||| |||||||| ||||||||| Sbjct: 563 ttccttttctgataagctatatcagttccatcatgacattaatggagggtgatgtgatac 622 Query: 126 taactggtnctcctgagggtgtaggccctgtccgaatagggcanaanatcaaagctggta 185 |||| ||| ||||||||||||| || ||||||||| |||| || || || | |||||||| Sbjct: 623 taacaggtactcctgagggtgtgggtcctgtccgagtaggtcagaagattacagctggta 682 Query: 186 taactg 191 |||||| Sbjct: 683 taactg 688
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 79.8 bits (40), Expect = 3e-12 Identities = 76/89 (85%) Strand = Plus / Minus Query: 131 ggtnctcctgagggtgtaggccctgtccgaatagggcanaanatcaaagctggtataact 190 ||| ||||||||||||||||||| || ||| ||| || || ||||||||||||||||| Sbjct: 34514023 ggtactcctgagggtgtaggcccagtacgaccaggacagaagatcaaagctggtataacc 34513964 Query: 191 ggcctcatcgaggccgagtttgatgttca 219 |||||||| || | |||||||||||||| Sbjct: 34513963 ggcctcattgatgttgagtttgatgttca 34513935 Score = 77.8 bits (39), Expect = 1e-11 Identities = 50/54 (92%) Strand = Plus / Plus Query: 73 tctaatcagttatatcagttcgatcatgacattgatggagggngatgtgatatt 126 ||||||||||||||||||||| ||||||||||| |||||||| ||||| ||||| Sbjct: 17379467 tctaatcagttatatcagttccatcatgacattaatggagggtgatgttatatt 17379520 Score = 71.9 bits (36), Expect = 8e-10 Identities = 75/89 (84%) Strand = Plus / Plus Query: 131 ggtnctcctgagggtgtaggccctgtccgaatagggcanaanatcaaagctggtataact 190 ||| ||||||||||||||||||| || ||| ||| || || ||||||||||||||||| Sbjct: 17379603 ggtactcctgagggtgtaggcccagtacgaccaggacagaagatcaaagctggtataacc 17379662 Query: 191 ggcctcatcgaggccgagtttgatgttca 219 |||||| | || | |||||||||||||| Sbjct: 17379663 ggcctcgttgatgttgagtttgatgttca 17379691 Score = 65.9 bits (33), Expect = 5e-08 Identities = 44/48 (91%) Strand = Plus / Minus Query: 73 tctaatcagttatatcagttcgatcatgacattgatggagggngatgt 120 |||||| |||||||||||||| ||||||||||| |||||||| ||||| Sbjct: 34514159 tctaataagttatatcagttccatcatgacattaatggagggtgatgt 34514112
>gb|AC096687.5| Oryza sativa chromosome 3 BAC OSJNBa0010E04 genomic sequence, complete sequence Length = 117505 Score = 79.8 bits (40), Expect = 3e-12 Identities = 76/89 (85%) Strand = Plus / Plus Query: 131 ggtnctcctgagggtgtaggccctgtccgaatagggcanaanatcaaagctggtataact 190 ||| ||||||||||||||||||| || ||| ||| || || ||||||||||||||||| Sbjct: 12144 ggtactcctgagggtgtaggcccagtacgaccaggacagaagatcaaagctggtataacc 12203 Query: 191 ggcctcatcgaggccgagtttgatgttca 219 |||||||| || | |||||||||||||| Sbjct: 12204 ggcctcattgatgttgagtttgatgttca 12232 Score = 65.9 bits (33), Expect = 5e-08 Identities = 44/48 (91%) Strand = Plus / Plus Query: 73 tctaatcagttatatcagttcgatcatgacattgatggagggngatgt 120 |||||| |||||||||||||| ||||||||||| |||||||| ||||| Sbjct: 12008 tctaataagttatatcagttccatcatgacattaatggagggtgatgt 12055
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 79.8 bits (40), Expect = 3e-12 Identities = 76/89 (85%) Strand = Plus / Minus Query: 131 ggtnctcctgagggtgtaggccctgtccgaatagggcanaanatcaaagctggtataact 190 ||| ||||||||||||||||||| || ||| ||| || || ||||||||||||||||| Sbjct: 34604095 ggtactcctgagggtgtaggcccagtacgaccaggacagaagatcaaagctggtataacc 34604036 Query: 191 ggcctcatcgaggccgagtttgatgttca 219 |||||||| || | |||||||||||||| Sbjct: 34604035 ggcctcattgatgttgagtttgatgttca 34604007 Score = 77.8 bits (39), Expect = 1e-11 Identities = 50/54 (92%) Strand = Plus / Plus Query: 73 tctaatcagttatatcagttcgatcatgacattgatggagggngatgtgatatt 126 ||||||||||||||||||||| ||||||||||| |||||||| ||||| ||||| Sbjct: 17373008 tctaatcagttatatcagttccatcatgacattaatggagggtgatgttatatt 17373061 Score = 71.9 bits (36), Expect = 8e-10 Identities = 75/89 (84%) Strand = Plus / Plus Query: 131 ggtnctcctgagggtgtaggccctgtccgaatagggcanaanatcaaagctggtataact 190 ||| ||||||||||||||||||| || ||| ||| || || ||||||||||||||||| Sbjct: 17373144 ggtactcctgagggtgtaggcccagtacgaccaggacagaagatcaaagctggtataacc 17373203 Query: 191 ggcctcatcgaggccgagtttgatgttca 219 |||||| | || | |||||||||||||| Sbjct: 17373204 ggcctcgttgatgttgagtttgatgttca 17373232 Score = 65.9 bits (33), Expect = 5e-08 Identities = 44/48 (91%) Strand = Plus / Minus Query: 73 tctaatcagttatatcagttcgatcatgacattgatggagggngatgt 120 |||||| |||||||||||||| ||||||||||| |||||||| ||||| Sbjct: 34604231 tctaataagttatatcagttccatcatgacattaatggagggtgatgt 34604184
>gb|AC135598.4| Oryza sativa chromosome 3 BAC OSJNBb0021K20 genomic sequence, complete sequence Length = 137220 Score = 77.8 bits (39), Expect = 1e-11 Identities = 50/54 (92%) Strand = Plus / Plus Query: 73 tctaatcagttatatcagttcgatcatgacattgatggagggngatgtgatatt 126 ||||||||||||||||||||| ||||||||||| |||||||| ||||| ||||| Sbjct: 101844 tctaatcagttatatcagttccatcatgacattaatggagggtgatgttatatt 101897 Score = 71.9 bits (36), Expect = 8e-10 Identities = 75/89 (84%) Strand = Plus / Plus Query: 131 ggtnctcctgagggtgtaggccctgtccgaatagggcanaanatcaaagctggtataact 190 ||| ||||||||||||||||||| || ||| ||| || || ||||||||||||||||| Sbjct: 101980 ggtactcctgagggtgtaggcccagtacgaccaggacagaagatcaaagctggtataacc 102039 Query: 191 ggcctcatcgaggccgagtttgatgttca 219 |||||| | || | |||||||||||||| Sbjct: 102040 ggcctcgttgatgttgagtttgatgttca 102068
>gb|AC133778.4| Oryza sativa chromosome 3 BAC OSJNBb0027B08 genomic sequence, complete sequence Length = 129302 Score = 65.9 bits (33), Expect = 5e-08 Identities = 44/48 (91%) Strand = Plus / Plus Query: 73 tctaatcagttatatcagttcgatcatgacattgatggagggngatgt 120 |||||| |||||||||||||| ||||||||||| |||||||| ||||| Sbjct: 129174 tctaataagttatatcagttccatcatgacattaatggagggtgatgt 129221
>gb|AC007188.7| Arabidopsis thaliana chromosome 2 clone T4D8 map mi421, complete sequence Length = 89836 Score = 40.1 bits (20), Expect = 2.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 173 atcaaagctggtataactgg 192 |||||||||||||||||||| Sbjct: 55150 atcaaagctggtataactgg 55131 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 841,106 Number of Sequences: 3902068 Number of extensions: 841106 Number of successful extensions: 50501 Number of sequences better than 10.0: 11 Number of HSP's better than 10.0 without gapping: 13 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 50414 Number of HSP's gapped (non-prelim): 87 length of query: 219 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 197 effective length of database: 17,147,199,772 effective search space: 3377998355084 effective search space used: 3377998355084 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
