ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | baak4e06 |
|---|---|
| Clone Library Name | barley_pub |
>UGPA_HORVU (Q43772) UTP--glucose-1-phosphate uridylyltransferase (EC 2.7.7.9)| (UDP-glucose pyrophosphorylase) (UDPGP) (UGPase) Length = 473 Score = 99.4 bits (246), Expect = 4e-21 Identities = 52/64 (81%), Positives = 52/64 (81%) Frame = +3 Query: 3 FLARFKSIPSIVELDSLKXXXXXXXXXXXXLKGNVTIAAKAGVKLEIPDGAVLENKDING 182 FLARFKSIPSIVELDSLK LKGNVTIAAKAGVKLEIPDGAVLENKDING Sbjct: 410 FLARFKSIPSIVELDSLKVSGDVSFGSGVVLKGNVTIAAKAGVKLEIPDGAVLENKDING 469 Query: 183 PEDI 194 PEDI Sbjct: 470 PEDI 473
>UGPA_SOLTU (P19595) UTP--glucose-1-phosphate uridylyltransferase (EC 2.7.7.9)| (UDP-glucose pyrophosphorylase) (UDPGP) (UGPase) Length = 476 Score = 89.0 bits (219), Expect = 5e-18 Identities = 44/64 (68%), Positives = 49/64 (76%) Frame = +3 Query: 3 FLARFKSIPSIVELDSLKXXXXXXXXXXXXLKGNVTIAAKAGVKLEIPDGAVLENKDING 182 FL RFKSIPSI++LDSLK LKG VT+AAK+GVKLEIPDGAV+ NKDING Sbjct: 413 FLGRFKSIPSIIDLDSLKVTGDVWFGSGVTLKGKVTVAAKSGVKLEIPDGAVIANKDING 472 Query: 183 PEDI 194 PEDI Sbjct: 473 PEDI 476
>UGPA_MUSAC (Q9SDX3) UTP--glucose-1-phosphate uridylyltransferase (EC 2.7.7.9)| (UDP-glucose pyrophosphorylase) (UDPGP) (UGPase) Length = 467 Score = 87.8 bits (216), Expect = 1e-17 Identities = 47/64 (73%), Positives = 50/64 (78%) Frame = +3 Query: 3 FLARFKSIPSIVELDSLKXXXXXXXXXXXXLKGNVTIAAKAGVKLEIPDGAVLENKDING 182 FL+RFKSIPSIVELDSLK LKGNV+IAAK+GVKLEI DGAVLENK ING Sbjct: 404 FLSRFKSIPSIVELDSLKVSGDVWFGEGVVLKGNVSIAAKSGVKLEISDGAVLENKVING 463 Query: 183 PEDI 194 PEDI Sbjct: 464 PEDI 467
>UGPA2_ARATH (Q9M9P3) Probable UTP--glucose-1-phosphate uridylyltransferase 2| (EC 2.7.7.9) (UDP-glucose pyrophosphorylase 2) (UDPGP 2) (UGPase 2) Length = 469 Score = 87.0 bits (214), Expect = 2e-17 Identities = 44/64 (68%), Positives = 50/64 (78%) Frame = +3 Query: 3 FLARFKSIPSIVELDSLKXXXXXXXXXXXXLKGNVTIAAKAGVKLEIPDGAVLENKDING 182 FL+RFKSIPSIVELDSLK LKG VT+AAK+GVKLEIPD AV+ENK+ING Sbjct: 406 FLSRFKSIPSIVELDSLKVSGDVWFGSSIVLKGKVTVAAKSGVKLEIPDRAVVENKNING 465 Query: 183 PEDI 194 PED+ Sbjct: 466 PEDL 469
>UGPA1_ARATH (P57751) UTP--glucose-1-phosphate uridylyltransferase 1 (EC| 2.7.7.9) (UDP-glucose pyrophosphorylase 1) (UDPGP 1) (UGPase 1) Length = 470 Score = 86.3 bits (212), Expect = 3e-17 Identities = 44/64 (68%), Positives = 47/64 (73%) Frame = +3 Query: 3 FLARFKSIPSIVELDSLKXXXXXXXXXXXXLKGNVTIAAKAGVKLEIPDGAVLENKDING 182 FL+RFKSIPSIVELDSLK LKG VT+ A AG KLEIPD AVLENKDING Sbjct: 407 FLSRFKSIPSIVELDSLKVSGDVWFGSGVVLKGKVTVKANAGTKLEIPDNAVLENKDING 466 Query: 183 PEDI 194 PED+ Sbjct: 467 PEDL 470
>UGPA_PYRPY (O64459) UTP--glucose-1-phosphate uridylyltransferase (EC 2.7.7.9)| (UDP-glucose pyrophosphorylase) (UDPGP) (UGPase) Length = 471 Score = 82.4 bits (202), Expect = 5e-16 Identities = 41/64 (64%), Positives = 48/64 (75%) Frame = +3 Query: 3 FLARFKSIPSIVELDSLKXXXXXXXXXXXXLKGNVTIAAKAGVKLEIPDGAVLENKDING 182 +L+RFKSIPSI+EL+SLK LKG VTI AK+GVKLEIPD AV+ NKDING Sbjct: 408 YLSRFKSIPSILELESLKVSGDVWFGAGVVLKGKVTITAKSGVKLEIPDNAVIANKDING 467 Query: 183 PEDI 194 PED+ Sbjct: 468 PEDL 471
>UGPA_ASTME (Q9LKG7) UTP--glucose-1-phosphate uridylyltransferase (EC 2.7.7.9)| (UDP-glucose pyrophosphorylase) (UDPGP) (UGPase) Length = 471 Score = 82.0 bits (201), Expect = 6e-16 Identities = 41/64 (64%), Positives = 48/64 (75%) Frame = +3 Query: 3 FLARFKSIPSIVELDSLKXXXXXXXXXXXXLKGNVTIAAKAGVKLEIPDGAVLENKDING 182 FL RFKSIPSIVELDSLK LKG V+I AK+GVK+EIPDGAV+ NK+ING Sbjct: 408 FLGRFKSIPSIVELDSLKVVGDVWFGTGVILKGKVSIVAKSGVKVEIPDGAVIANKEING 467 Query: 183 PEDI 194 P+D+ Sbjct: 468 PKDL 471
>UGPA_DICDI (P08800) UTP--glucose-1-phosphate uridylyltransferase (EC 2.7.7.9)| (UDP-glucose pyrophosphorylase) (UDPGP) (UGPase) Length = 511 Score = 53.9 bits (128), Expect = 2e-07 Identities = 27/57 (47%), Positives = 34/57 (59%) Frame = +3 Query: 12 RFKSIPSIVELDSLKXXXXXXXXXXXXLKGNVTIAAKAGVKLEIPDGAVLENKDING 182 RFKSIP ++ELD L LKG V I A G +++IPDG VLENK ++G Sbjct: 448 RFKSIPDLLELDHLTVSGDVYFGSRITLKGTVIIVANHGERVDIPDGVVLENKVLSG 504
>UGPA2_MOUSE (Q91ZJ5) UTP--glucose-1-phosphate uridylyltransferase 2 (EC| 2.7.7.9) (UDP-glucose pyrophosphorylase 2) (UDPGP 2) (UGPase 2) Length = 507 Score = 53.1 bits (126), Expect = 3e-07 Identities = 27/60 (45%), Positives = 36/60 (60%) Frame = +3 Query: 3 FLARFKSIPSIVELDSLKXXXXXXXXXXXXLKGNVTIAAKAGVKLEIPDGAVLENKDING 182 +L RF+SIP ++ELD L LKG V I A G +++IP GAVLENK ++G Sbjct: 441 YLRRFESIPDMLELDHLTVSGDVTFGKNVSLKGTVIIIANHGDRIDIPPGAVLENKIVSG 500
>UGPA2_HUMAN (Q16851) UTP--glucose-1-phosphate uridylyltransferase 2 (EC| 2.7.7.9) (UDP-glucose pyrophosphorylase 2) (UDPGP 2) (UGPase 2) Length = 507 Score = 53.1 bits (126), Expect = 3e-07 Identities = 27/60 (45%), Positives = 36/60 (60%) Frame = +3 Query: 3 FLARFKSIPSIVELDSLKXXXXXXXXXXXXLKGNVTIAAKAGVKLEIPDGAVLENKDING 182 +L RF+SIP ++ELD L LKG V I A G +++IP GAVLENK ++G Sbjct: 441 YLRRFESIPDMLELDHLTVSGDVTFGKNVSLKGTVIIIANHGDRIDIPPGAVLENKIVSG 500
>UGPA2_BOVIN (Q07130) UTP--glucose-1-phosphate uridylyltransferase 2 (EC| 2.7.7.9) (UDP-glucose pyrophosphorylase 2) (UDPGP 2) (UGPase 2) Length = 507 Score = 53.1 bits (126), Expect = 3e-07 Identities = 27/60 (45%), Positives = 36/60 (60%) Frame = +3 Query: 3 FLARFKSIPSIVELDSLKXXXXXXXXXXXXLKGNVTIAAKAGVKLEIPDGAVLENKDING 182 +L RF+SIP ++ELD L LKG V I A G +++IP GAVLENK ++G Sbjct: 441 YLRRFESIPDMLELDHLTVSGDVTFGKNVSLKGTVIIIANHGDRIDIPPGAVLENKIVSG 500
>UGPA1_HUMAN (Q07131) UTP--glucose-1-phosphate uridylyltransferase 1 (EC| 2.7.7.9) (UDP-glucose pyrophosphorylase 1) (UDPGP 1) (UGPase 1) Length = 507 Score = 53.1 bits (126), Expect = 3e-07 Identities = 27/60 (45%), Positives = 36/60 (60%) Frame = +3 Query: 3 FLARFKSIPSIVELDSLKXXXXXXXXXXXXLKGNVTIAAKAGVKLEIPDGAVLENKDING 182 +L RF+SIP ++ELD L LKG V I A G +++IP GAVLENK ++G Sbjct: 441 YLRRFESIPDMLELDHLTVSGDVTFGKNVSLKGTVIIIANHGDRIDIPPGAVLENKIVSG 500
>UGPA1_CRIGR (O35156) UTP--glucose-1-phosphate uridylyltransferase 1 (EC| 2.7.7.9) (UDP-glucose pyrophosphorylase 1) (UDPGP 1) (UGPase 1) Length = 507 Score = 53.1 bits (126), Expect = 3e-07 Identities = 27/60 (45%), Positives = 36/60 (60%) Frame = +3 Query: 3 FLARFKSIPSIVELDSLKXXXXXXXXXXXXLKGNVTIAAKAGVKLEIPDGAVLENKDING 182 +L RF+SIP ++ELD L LKG V I A G +++IP GAVLENK ++G Sbjct: 441 YLRRFESIPDMLELDHLTVSGDVTFGKNVSLKGTVIIIANHGDRIDIPPGAVLENKIVSG 500
>UGPA2_PIG (P79303) UTP--glucose-1-phosphate uridylyltransferase 2 (EC| 2.7.7.9) (UDP-glucose pyrophosphorylase 2) (UDPGP 2) (UGPase 2) Length = 507 Score = 51.6 bits (122), Expect = 9e-07 Identities = 26/60 (43%), Positives = 35/60 (58%) Frame = +3 Query: 3 FLARFKSIPSIVELDSLKXXXXXXXXXXXXLKGNVTIAAKAGVKLEIPDGAVLENKDING 182 +L RF+SIP ++ELD L LKG V I G +++IP GAVLENK ++G Sbjct: 441 YLRRFESIPDMLELDHLTVSGDVTFGKNVSLKGTVIIIXNHGDRIDIPPGAVLENKIVSG 500
>UGPA1_YEAST (P32861) UTP--glucose-1-phosphate uridylyltransferase (EC 2.7.7.9)| (UDP-glucose pyrophosphorylase) (UDPGP) (UGPase) Length = 499 Score = 45.4 bits (106), Expect = 6e-05 Identities = 24/60 (40%), Positives = 31/60 (51%) Frame = +3 Query: 3 FLARFKSIPSIVELDSLKXXXXXXXXXXXXLKGNVTIAAKAGVKLEIPDGAVLENKDING 182 F AR IP IVELD L L+G V I G K++IP+G++LEN + G Sbjct: 433 FNARIPHIPKIVELDHLTITGNVFLGKDVTLRGTVIIVCSDGHKIDIPNGSILENVVVTG 492
>UGPA1_SCHPO (P78811) Probable UTP--glucose-1-phosphate uridylyltransferase (EC| 2.7.7.9) (UDP-glucose pyrophosphorylase) (UDPGP) (UGPase) Length = 506 Score = 44.3 bits (103), Expect = 1e-04 Identities = 25/60 (41%), Positives = 31/60 (51%) Frame = +3 Query: 3 FLARFKSIPSIVELDSLKXXXXXXXXXXXXLKGNVTIAAKAGVKLEIPDGAVLENKDING 182 F A SIP I+ELD L LKG V I A +++IP+G+VLEN I G Sbjct: 440 FSAHIPSIPKILELDHLTITGDVNIGRNVTLKGTVIIVASDANRIDIPNGSVLENCVITG 499
>UGPA2_SCHPO (O59819) Probable UTP--glucose-1-phosphate uridylyltransferase (EC| 2.7.7.9) (UDP-glucose pyrophosphorylase) (UDPGP) (UGPase) Length = 499 Score = 34.7 bits (78), Expect = 0.11 Identities = 21/57 (36%), Positives = 26/57 (45%) Frame = +3 Query: 12 RFKSIPSIVELDSLKXXXXXXXXXXXXLKGNVTIAAKAGVKLEIPDGAVLENKDING 182 R +PS+ +L SL LKGN+ I A L IP AVLEN + G Sbjct: 436 RIPYMPSMKDLVSLSISGNVYFGRNVILKGNIVIVASENTILCIPSNAVLENCVVTG 492
>UGPA2_YEAST (P38709) Probable UTP--glucose-1-phosphate uridylyltransferase (EC| 2.7.7.9) (UDP-glucose pyrophosphorylase) (UDPGP) (UGPase) Length = 493 Score = 33.9 bits (76), Expect = 0.18 Identities = 18/51 (35%), Positives = 25/51 (49%) Frame = +3 Query: 24 IPSIVELDSLKXXXXXXXXXXXXLKGNVTIAAKAGVKLEIPDGAVLENKDI 176 IP+I+EL+ L LKG V I + +PDG++LEN I Sbjct: 431 IPNILELEHLTVMGNVFFGRNITLKGTVIIICDENDVITVPDGSILENVTI 481
>Y564_TREPA (O83575) Hypothetical protein TP0564| Length = 678 Score = 30.8 bits (68), Expect = 1.6 Identities = 21/69 (30%), Positives = 38/69 (55%), Gaps = 3/69 (4%) Frame = -3 Query: 382 QEERKCQWTAQRGLQL-LCNGAPAGQH-PSRMHTK-NYRTVNSAKEDRKVSGDARRWAGR 212 QE C ++RGL L L + P +H +R H + + + A++ ++S D+R + G Sbjct: 484 QEITACYRISERGLTLSLHSPLPIPRHIRARTHARLSTAEIQKAQDHLQISMDSRSYFGG 543 Query: 211 RVNVTQISS 185 R+NV ++ S Sbjct: 544 RINVLEVRS 552
>YLPM1_HUMAN (P49750) YLP motif-containing protein 1 (Nuclear protein ZAP3)| (ZAP113) Length = 1951 Score = 30.4 bits (67), Expect = 2.0 Identities = 18/46 (39%), Positives = 24/46 (52%) Frame = +2 Query: 95 QGQRDHRCQGWSQVGDPRRSGA*EQGHQRPRGYLSDVHPPARPPSR 232 QG +D G + G PRR+G+ E+G R G + PP R SR Sbjct: 903 QGSQDRGAAGSRERGPPRRAGSQERGPLRRAGSRERI-PPRRAGSR 947
>CI079_HUMAN (Q6ZUB1) Protein C9orf79| Length = 1445 Score = 29.6 bits (65), Expect = 3.5 Identities = 16/46 (34%), Positives = 23/46 (50%), Gaps = 1/46 (2%) Frame = -3 Query: 331 CNGAPAGQHPSRMHTKNYRTVNSAKEDRKVSGDARR-WAGRRVNVT 197 C G+ G PSR +V + ED++ GD RR W + V+ T Sbjct: 707 CLGSKLGPDPSRDQGSGRTSVKALDEDKEAEGDLRRSWKYQSVSST 752
>RECF_STRP8 (Q8NYZ4) DNA replication and repair protein recF| Length = 368 Score = 29.6 bits (65), Expect = 3.5 Identities = 15/32 (46%), Positives = 21/32 (65%) Frame = -1 Query: 414 NQKKFYVPGTPRKNGSVNGPHRGDYSYYVTGL 319 +QK F+ RKN SV GPHR D ++Y+ G+ Sbjct: 246 HQKDFF-----RKNTSV-GPHRDDLAFYINGM 271
>RECF_STRP6 (Q5X9A5) DNA replication and repair protein recF| Length = 368 Score = 29.6 bits (65), Expect = 3.5 Identities = 15/32 (46%), Positives = 21/32 (65%) Frame = -1 Query: 414 NQKKFYVPGTPRKNGSVNGPHRGDYSYYVTGL 319 +QK F+ RKN SV GPHR D ++Y+ G+ Sbjct: 246 HQKDFF-----RKNTSV-GPHRDDLAFYINGM 271
>RECF_STRP3 (Q8K5G2) DNA replication and repair protein recF| Length = 368 Score = 29.6 bits (65), Expect = 3.5 Identities = 15/32 (46%), Positives = 21/32 (65%) Frame = -1 Query: 414 NQKKFYVPGTPRKNGSVNGPHRGDYSYYVTGL 319 +QK F+ RKN SV GPHR D ++Y+ G+ Sbjct: 246 HQKDFF-----RKNTSV-GPHRDDLAFYINGM 271
>SPTB2_MOUSE (Q62261) Spectrin beta chain, brain 1 (Spectrin, non-erythroid beta| chain 1) (Beta-II spectrin) (Fodrin beta chain) Length = 2363 Score = 29.6 bits (65), Expect = 3.5 Identities = 19/54 (35%), Positives = 25/54 (46%), Gaps = 2/54 (3%) Frame = -3 Query: 385 SQEERKCQWTAQRGLQLLCNGAPAGQHPSRM--HTKNYRTVNSAKEDRKVSGDA 230 S+E QW +G Q+ NG PA Q RM + VN A E R S ++ Sbjct: 2110 SEEAESQQWDTSKGDQVSQNGLPAEQGSPRMAGTMETSEMVNGAAEQRTSSKES 2163 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 69,158,874 Number of Sequences: 219361 Number of extensions: 1545499 Number of successful extensions: 4184 Number of sequences better than 10.0: 25 Number of HSP's better than 10.0 without gapping: 3981 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4181 length of database: 80,573,946 effective HSP length: 102 effective length of database: 58,199,124 effective search space used: 2618960580 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
