ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name baak4e03
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1PEL8_ARATH (Q9M8Z8) Probable pectate lyase 8 precursor (EC 4.2.2.2) 33 0.72
2YAMB_SCHPO (Q10064) Hypothetical protein C1F5.11c in chromosome I 33 0.72
3HAT2_GIBZE (Q4I7L0) Histone acetyltransferase type B subunit 2 (... 31 2.7
4PIN2_ARATH (Q9LU77) Auxin efflux carrier component 2 (AtPIN2) (A... 31 3.6
5Y335B_MYCGE (Q9ZB73) Hypothetical protein MG335.2 31 3.6
6YM96_YEAST (Q04893) Hypothetical 113.1 kDa protein in PRE5-FET4 ... 30 4.6
7PEL14_ARATH (Q9SVQ6) Putative pectate lyase 14 precursor (EC 4.2... 30 6.1
8AFLR_EMENI (P52957) Sterigmatocystin biosynthesis regulatory pro... 30 6.1
9PIN3B_ORYSA (Q6L5F6) Putative auxin efflux carrier component 3b ... 30 7.9
10PEL15_ARATH (Q944R1) Probable pectate lyase 15 precursor (EC 4.2... 30 7.9

>PEL8_ARATH (Q9M8Z8) Probable pectate lyase 8 precursor (EC 4.2.2.2)|
          Length = 416

 Score = 33.1 bits (74), Expect = 0.72
 Identities = 21/72 (29%), Positives = 35/72 (48%), Gaps = 6/72 (8%)
 Frame = +3

Query: 42  FSGDLQVVIIQDFKWYSFL------LKLHRLYGGTHLTVNGVSSIRVQSIEVAEVVPNGD 203
           F  D+ + + Q+    SF       + +H +  G  LT+  V++I V  I V +  P G+
Sbjct: 139 FKRDMVITLKQELIMNSFKTIDGRGVNVH-IANGACLTIQYVTNIIVHGIHVHDCKPTGN 197

Query: 204 VFVQSDGEHFGF 239
             V+S   H+GF
Sbjct: 198 AMVRSSPSHYGF 209



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>YAMB_SCHPO (Q10064) Hypothetical protein C1F5.11c in chromosome I|
          Length = 3655

 Score = 33.1 bits (74), Expect = 0.72
 Identities = 18/47 (38%), Positives = 24/47 (51%)
 Frame = -3

Query: 608  QLVYEHRRLSCCSRILVYMQEKLHGGWLPHSSNLFHLLTTCQKTSEW 468
            QLVYEH +L  C+  L Y   + HG WL       H +   QK ++W
Sbjct: 2570 QLVYEHAQLKVCTGSLPYSPTE-HGFWLD------HWILCAQKLNQW 2609



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>HAT2_GIBZE (Q4I7L0) Histone acetyltransferase type B subunit 2 (EC 2.3.1.48)|
          Length = 423

 Score = 31.2 bits (69), Expect = 2.7
 Identities = 15/47 (31%), Positives = 28/47 (59%), Gaps = 1/47 (2%)
 Frame = +3

Query: 102 KLHRLYGGTHLTVNGVSSIRVQSIEVAEVV-PNGDVFVQSDGEHFGF 239
           K+HRL  GTH +    + +++  +++ +VV PN D + +  GE  G+
Sbjct: 57  KIHRLLLGTHTSDESPNYLQIADVQIPKVVAPNPDDYDEERGEIGGY 103



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>PIN2_ARATH (Q9LU77) Auxin efflux carrier component 2 (AtPIN2) (Auxin efflux|
           carrier AGR) (Polar-auxin-transport efflux component
           AGRAVITROPIC 1) (AtAGR1) (Ethylene insensitive root 1)
           (AtEIR1) (WAVY6)
          Length = 647

 Score = 30.8 bits (68), Expect = 3.6
 Identities = 23/71 (32%), Positives = 35/71 (49%), Gaps = 9/71 (12%)
 Frame = +3

Query: 42  FSGDL--QVVIIQDFKWYSFLLKLHRLYGGTHL-------TVNGVSSIRVQSIEVAEVVP 194
           FSG+L  Q+V++Q   WY+ +L L    G   L       T   ++S RV S  ++    
Sbjct: 128 FSGNLMVQIVVLQSIIWYTLMLFLFEFRGAKLLISEQFPETAGSITSFRVDSDVIS---L 184

Query: 195 NGDVFVQSDGE 227
           NG   +Q+D E
Sbjct: 185 NGREPLQTDAE 195



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>Y335B_MYCGE (Q9ZB73) Hypothetical protein MG335.2|
          Length = 341

 Score = 30.8 bits (68), Expect = 3.6
 Identities = 11/28 (39%), Positives = 20/28 (71%)
 Frame = -3

Query: 308 KKRHSGLAEEIYCGRQNQESGREKTEVL 225
           KK H+ LA E+YC +QN+  G+ + +++
Sbjct: 54  KKEHNNLAIEVYCDKQNEGIGKVRDKLV 81



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>YM96_YEAST (Q04893) Hypothetical 113.1 kDa protein in PRE5-FET4 intergenic|
            region
          Length = 1140

 Score = 30.4 bits (67), Expect = 4.6
 Identities = 20/71 (28%), Positives = 28/71 (39%)
 Frame = -1

Query: 385  EQKRVGEGSCVFCDHASSVHRRNPTGRNGTAV*LKKSTAAGRTKNLVGRKPKCSPSDCTK 206
            E K+   GS      +S V + +PT +   +    +S AAG T       P  SPS+   
Sbjct: 958  ETKKAKPGSETVRSSSSFVEKTSPTTKASPSTSPSESKAAGNTSVATNASPSTSPSESQG 1017

Query: 205  TSPLGTTSATS 173
            T       A S
Sbjct: 1018 TGSTSVEGAKS 1028



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>PEL14_ARATH (Q9SVQ6) Putative pectate lyase 14 precursor (EC 4.2.2.2)|
          Length = 418

 Score = 30.0 bits (66), Expect = 6.1
 Identities = 19/72 (26%), Positives = 35/72 (48%), Gaps = 6/72 (8%)
 Frame = +3

Query: 42  FSGDLQVVIIQDFKWYSFL------LKLHRLYGGTHLTVNGVSSIRVQSIEVAEVVPNGD 203
           F  D+ + + Q+    SF       + +H + GG  LTV  V++I +  I + +    G+
Sbjct: 141 FKRDMVITLSQELIMNSFKTIDGRGVNVH-IAGGACLTVQYVTNIIIHGINIHDCKRTGN 199

Query: 204 VFVQSDGEHFGF 239
             V+S   H+G+
Sbjct: 200 AMVRSSESHYGW 211



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>AFLR_EMENI (P52957) Sterigmatocystin biosynthesis regulatory protein|
          Length = 433

 Score = 30.0 bits (66), Expect = 6.1
 Identities = 20/67 (29%), Positives = 30/67 (44%), Gaps = 5/67 (7%)
 Frame = -1

Query: 361 SCVFCDHAS-SVHRRNPTG----RNGTAV*LKKSTAAGRTKNLVGRKPKCSPSDCTKTSP 197
           SC+ C  +    ++  PT     R G       S   GRT+ +   +PK +PS  T T+ 
Sbjct: 27  SCISCSRSKVKCNKEKPTCSRCVRRGLPCEYMVSRRTGRTRVIGVEQPKTAPSPTTPTNT 86

Query: 196 LGTTSAT 176
              T+AT
Sbjct: 87  TAATTAT 93



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>PIN3B_ORYSA (Q6L5F6) Putative auxin efflux carrier component 3b (OsPIN3b)|
          Length = 590

 Score = 29.6 bits (65), Expect = 7.9
 Identities = 13/25 (52%), Positives = 18/25 (72%), Gaps = 2/25 (8%)
 Frame = +3

Query: 39  PFSGDL--QVVIIQDFKWYSFLLKL 107
           P+SGDL  Q+V++Q   WY+ LL L
Sbjct: 133 PYSGDLMVQIVVLQSIVWYTLLLFL 157



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>PEL15_ARATH (Q944R1) Probable pectate lyase 15 precursor (EC 4.2.2.2) (Pectate|
           lyase A11)
          Length = 470

 Score = 29.6 bits (65), Expect = 7.9
 Identities = 13/61 (21%), Positives = 29/61 (47%)
 Frame = +3

Query: 57  QVVIIQDFKWYSFLLKLHRLYGGTHLTVNGVSSIRVQSIEVAEVVPNGDVFVQSDGEHFG 236
           Q +I+  FK          +  G  +T+  ++++ +  + + +  P G+  V+S   HFG
Sbjct: 203 QELIMNSFKTIDARGSNVHIANGACITIQFITNVIIHGLHIHDCKPTGNAMVRSSPSHFG 262

Query: 237 F 239
           +
Sbjct: 263 W 263


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 96,054,097
Number of Sequences: 219361
Number of extensions: 2069147
Number of successful extensions: 4740
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4578
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4740
length of database: 80,573,946
effective HSP length: 107
effective length of database: 57,102,319
effective search space used: 5995743495
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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