ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name baak4e03
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|BT019044.1| Zea mays clone Contig565.F mRNA sequence 182 9e-43
2gb|AY104898.1| Zea mays PCO078090 mRNA sequence 174 2e-40
3dbj|AK101342.1| Oryza sativa (japonica cultivar-group) cDNA clon... 96 2e-16
4gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 62 2e-06
5gb|AC119747.1| Genomic sequence for Oryza sativa, Nipponbare str... 62 2e-06
6dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 62 2e-06
7gb|AC123066.4| Mus musculus BAC clone RP23-262I13 from chromosom... 40 8.7
8ref|XM_388523.1| Gibberella zeae PH-1 chromosome 2 hypothetical ... 40 8.7
9emb|BX663531.3| Chicken DNA sequence from clone WAG-18M1, comple... 40 8.7
10gb|AE016795.2| Vibrio vulnificus CMCP6 chromosome I complete seq... 40 8.7
11ref|XM_790346.1| PREDICTED: Strongylocentrotus purpuratus simila... 40 8.7
12emb|BX649598.17| Zebrafish DNA sequence from clone CH211-214P12 ... 40 8.7
13dbj|AP004717.1| Gallus gallus genomic DNA, chromosome 5, clone:1... 40 8.7
14emb|BX470162.9| Zebrafish DNA sequence from clone CH211-216L23 i... 40 8.7
15dbj|AB085171.1| Gallus gallus gene for fast skeletal muscle trop... 40 8.7
16gb|AC160647.1| Gallus gallus BAC clone CH261-14N23 from chromoso... 40 8.7
17gb|AC159011.2| Gallus gallus BAC clone CH261-107A24 from chromos... 40 8.7 
>gb|BT019044.1| Zea mays clone Contig565.F mRNA sequence
          Length = 879

 Score =  182 bits (92), Expect = 9e-43
 Identities = 206/244 (84%)
 Strand = Plus / Plus

                                                                       
Query: 6   ggtggtggcatgaagattactccaacagttgatccttttagcggtgaccttcaggttgtt 65
           |||||||| |||||||| |||||||||| |||||| ||||| ||  ||||| ||||||||
Sbjct: 317 ggtggtggtatgaagataactccaacagctgatccgtttagtggcaaccttgaggttgtt 376

                                                                       
Query: 66  attatacaagatttcaagtggtacagttttcttcttaagctacataggctgtatggaggc 125
           ||| | ||||||||||| ||||||   ||| |||| |||||||| ||||| |||||||| 
Sbjct: 377 attcttcaagatttcaaatggtacgactttattctgaagctacacaggctctatggaggt 436

                                                                       
Query: 126 acacacttaacggtgaatggtgtgtcatcaataagagttcaatcaattgaagtggcagag 185
           |||||  || | ||||||||||| || ||||| || || |||||||||||||| ||||||
Sbjct: 437 acacatctatcagtgaatggtgtttcgtcaatgagggtccaatcaattgaagtagcagag 496

                                                                       
Query: 186 gtggtgcctaacggcgacgtctttgtgcaatctgatggggagcacttcggttttctcccg 245
           |||||| ||| ||| | |||||||||||||||||| || ||||| ||||| ||||| |||
Sbjct: 497 gtggtggctagcggtggcgtctttgtgcaatctgacggagagcatttcggctttctgccg 556

               
Query: 246 acca 249
           ||||
Sbjct: 557 acca 560
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>gb|AY104898.1| Zea mays PCO078090 mRNA sequence
          Length = 1289

 Score =  174 bits (88), Expect = 2e-40
 Identities = 205/244 (84%)
 Strand = Plus / Plus

                                                                        
Query: 6    ggtggtggcatgaagattactccaacagttgatccttttagcggtgaccttcaggttgtt 65
            |||||||| |||||||| |||||||||| |||||| ||||| ||  ||||| ||||||||
Sbjct: 827  ggtggtggtatgaagataactccaacagctgatccgtttagtggcaaccttgaggttgtt 886

                                                                        
Query: 66   attatacaagatttcaagtggtacagttttcttcttaagctacataggctgtatggaggc 125
            ||| | ||||||||||| ||||||   ||| |||| |||||||| ||||| |||||||| 
Sbjct: 887  attcttcaagatttcaaatggtacgactttattctgaagctacacaggctctatggaggt 946

                                                                        
Query: 126  acacacttaacggtgaatggtgtgtcatcaataagagttcaatcaattgaagtggcagag 185
            |||||  || | ||||||||||| || ||||| || || |||||||||||||| ||||||
Sbjct: 947  acacatctatcagtgaatggtgtttcgtcaatgagggtccaatcaattgaagtagcagag 1006

                                                                        
Query: 186  gtggtgcctaacggcgacgtctttgtgcaatctgatggggagcacttcggttttctcccg 245
            |||| | ||| ||| | |||||||||||||||||| || ||||| ||||| ||||| |||
Sbjct: 1007 gtggcggctagcggtggcgtctttgtgcaatctgacggagagcatttcggctttctgccg 1066

                
Query: 246  acca 249
            ||||
Sbjct: 1067 acca 1070
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>dbj|AK101342.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033034J23, full
            insert sequence
          Length = 1281

 Score = 95.6 bits (48), Expect = 2e-16
 Identities = 144/176 (81%)
 Strand = Plus / Plus

                                                                        
Query: 9    ggtggcatgaagattactccaacagttgatccttttagcggtgaccttcaggttgttatt 68
            ||||| |||||||| |||||||||| |||||||||  | ||||||||| |||| ||||||
Sbjct: 841  ggtggtatgaagatcactccaacagctgatcctttcgggggtgaccttgaggtcgttatt 900

                                                                        
Query: 69   atacaagatttcaagtggtacagttttcttcttaagctacataggctgtatggaggcaca 128
             | ||||||||||| ||| |   ||| || || ||||| |||||  |||||||||| || 
Sbjct: 901  cttcaagatttcaaatggcatgatttcctgctcaagcttcatagattgtatggaggaact 960

                                                                    
Query: 129  cacttaacggtgaatggtgtgtcatcaataagagttcaatcaattgaagtggcaga 184
            ||  || | |||| |||||||||||| ||||||||||| || |||||||| |||||
Sbjct: 961  catctatcagtgactggtgtgtcatcgataagagttcagtcgattgaagtagcaga 1016



 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 73/87 (83%)
 Strand = Plus / Plus

                                                                        
Query: 205  tctttgtgcaatctgatggggagcacttcggttttctcccgaccagattcttggttctgc 264
            ||||||||||||||||||||||||| || |||||||| || |||| ||| |  ||||| |
Sbjct: 1037 tctttgtgcaatctgatggggagcattttggttttcttccaaccaaattttcagttcttc 1096

                                       
Query: 265  ctgccgcagtagatttcttcagctaga 291
            | |  ||||| ||||||||| ||||||
Sbjct: 1097 ccggtgcagttgatttcttctgctaga 1123
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 73/87 (83%)
 Strand = Plus / Plus

                                                                           
Query: 205     tctttgtgcaatctgatggggagcacttcggttttctcccgaccagattcttggttctgc 264
               ||||||||||||||||||||||||| || |||||||| || |||| ||| |  ||||| |
Sbjct: 1431392 tctttgtgcaatctgatggggagcattttggttttcttccaaccaaattttcagttcttc 1431451

                                          
Query: 265     ctgccgcagtagatttcttcagctaga 291
               | |  ||||| ||||||||| ||||||
Sbjct: 1431452 ccggtgcagttgatttcttctgctaga 1431478
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>gb|AC119747.1| Genomic sequence for Oryza sativa, Nipponbare strain, clone OJ1293G11,
             from chromosome 3, complete sequence
          Length = 147806

 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 73/87 (83%)
 Strand = Plus / Plus

                                                                         
Query: 205   tctttgtgcaatctgatggggagcacttcggttttctcccgaccagattcttggttctgc 264
             ||||||||||||||||||||||||| || |||||||| || |||| ||| |  ||||| |
Sbjct: 92895 tctttgtgcaatctgatggggagcattttggttttcttccaaccaaattttcagttcttc 92954

                                        
Query: 265   ctgccgcagtagatttcttcagctaga 291
             | |  ||||| ||||||||| ||||||
Sbjct: 92955 ccggtgcagttgatttcttctgctaga 92981
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
               sequence
          Length = 36192742

 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 73/87 (83%)
 Strand = Plus / Plus

                                                                           
Query: 205     tctttgtgcaatctgatggggagcacttcggttttctcccgaccagattcttggttctgc 264
               ||||||||||||||||||||||||| || |||||||| || |||| ||| |  ||||| |
Sbjct: 1431390 tctttgtgcaatctgatggggagcattttggttttcttccaaccaaattttcagttcttc 1431449

                                          
Query: 265     ctgccgcagtagatttcttcagctaga 291
               | |  ||||| ||||||||| ||||||
Sbjct: 1431450 ccggtgcagttgatttcttctgctaga 1431476
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>gb|AC123066.4| Mus musculus BAC clone RP23-262I13 from chromosome 19, complete sequence
          Length = 206333

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 302    gtttcttcctgttggatttc 321
              ||||||||||||||||||||
Sbjct: 112183 gtttcttcctgttggatttc 112202
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>ref|XM_388523.1| Gibberella zeae PH-1 chromosome 2 hypothetical protein (FG08347.1)
           partial mRNA
          Length = 1596

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 575 agcagctgagtcgtcgatgt 594
           ||||||||||||||||||||
Sbjct: 54  agcagctgagtcgtcgatgt 35
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>emb|BX663531.3| Chicken DNA sequence from clone WAG-18M1, complete sequence
          Length = 111106

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 247   ccagattcttggttctgcct 266
             ||||||||||||||||||||
Sbjct: 24126 ccagattcttggttctgcct 24145
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>gb|AE016795.2| Vibrio vulnificus CMCP6 chromosome I complete sequence
          Length = 3281944

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 381     tgttcacctggtcgatttcttctg 404
               |||||| |||||||||||||||||
Sbjct: 1868601 tgttcaactggtcgatttcttctg 1868578
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>ref|XM_790346.1| PREDICTED: Strongylocentrotus purpuratus similar to CG9779-PA
           (LOC590752), partial mRNA
          Length = 250

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 167 atcaattgaagtggcagagg 186
           ||||||||||||||||||||
Sbjct: 69  atcaattgaagtggcagagg 88
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>emb|BX649598.17| Zebrafish DNA sequence from clone CH211-214P12 in linkage group 18,
             complete sequence
          Length = 213741

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 206   ctttgtgcaatctgatgggg 225
             ||||||||||||||||||||
Sbjct: 39921 ctttgtgcaatctgatgggg 39940
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>dbj|AP004717.1| Gallus gallus genomic DNA, chromosome 5, clone:161D9, complete sequence
          Length = 221022

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 247    ccagattcttggttctgcct 266
              ||||||||||||||||||||
Sbjct: 125012 ccagattcttggttctgcct 124993
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>emb|BX470162.9| Zebrafish DNA sequence from clone CH211-216L23 in linkage group 18,
             complete sequence
          Length = 215723

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 206   ctttgtgcaatctgatgggg 225
             ||||||||||||||||||||
Sbjct: 77609 ctttgtgcaatctgatgggg 77628
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>dbj|AB085171.1| Gallus gallus gene for fast skeletal muscle troponin T isoform,
            complete cds
          Length = 33941

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 247  ccagattcttggttctgcct 266
            ||||||||||||||||||||
Sbjct: 6240 ccagattcttggttctgcct 6259
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>gb|AC160647.1| Gallus gallus BAC clone CH261-14N23 from chromosome unknown, complete
             sequence
          Length = 237526

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 247   ccagattcttggttctgcct 266
             ||||||||||||||||||||
Sbjct: 36078 ccagattcttggttctgcct 36059
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>gb|AC159011.2| Gallus gallus BAC clone CH261-107A24 from chromosome unknown, complete
              sequence
          Length = 249034

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 247    ccagattcttggttctgcct 266
              ||||||||||||||||||||
Sbjct: 206204 ccagattcttggttctgcct 206185


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,140,625
Number of Sequences: 3902068
Number of extensions: 5140625
Number of successful extensions: 82227
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 82121
Number of HSP's gapped (non-prelim): 105
length of query: 640
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 617
effective length of database: 17,143,297,704
effective search space: 10577414683368
effective search space used: 10577414683368
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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