ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name baak4e02
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1HEY1_HUMAN (Q9Y5J3) Hairy/enhancer-of-split related with YRPW mo... 31 2.6
2MGAT1_RABIT (P27115) Alpha-1,3-mannosyl-glycoprotein 2-beta-N-ac... 29 9.8
3MGAT1_MOUSE (P27808) Alpha-1,3-mannosyl-glycoprotein 2-beta-N-ac... 29 9.8

>HEY1_HUMAN (Q9Y5J3) Hairy/enhancer-of-split related with YRPW motif 1 (Hairy|
           and enhancer of split related 1) (HESR-1)
           (Cardiovascular helix-loop-helix factor 2) (HES-related
           repressor protein 2) (HERP2)
          Length = 304

 Score = 31.2 bits (69), Expect = 2.6
 Identities = 18/54 (33%), Positives = 24/54 (44%), Gaps = 11/54 (20%)
 Frame = -2

Query: 618 TLLPCSPHHCPMLGSAHPKVPIW-----------LRIRRAHTNICPPLFTKVRS 490
           T  P  PHH   LGSAHP+ P             L +  + + + PPL + V S
Sbjct: 207 TASPTEPHHQGRLGSAHPEAPALRAPPSGSLGPVLPVVTSASKLSPPLLSSVAS 260



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>MGAT1_RABIT (P27115) Alpha-1,3-mannosyl-glycoprotein|
           2-beta-N-acetylglucosaminyltransferase (EC 2.4.1.101)
           (N-glycosyl-oligosaccharide-glycoprotein
           N-acetylglucosaminyltransferase I) (GNT-I) (GlcNAc-T I)
          Length = 447

 Score = 29.3 bits (64), Expect = 9.8
 Identities = 25/88 (28%), Positives = 35/88 (39%), Gaps = 10/88 (11%)
 Frame = +1

Query: 355 ELAPSTFEAFAKVPNVLRPHTQIFCTSEWVLGTREDLVKDIIAELR------PDLG---- 504
           E+AP  FE F     +L+    ++C S W    +E +V     EL       P LG    
Sbjct: 215 EVAPDFFEYFQATYPLLKADPSLWCVSAWNDNGKEQMVDSSKPELLYRTDFFPGLGWLLL 274

Query: 505 EEWWTYVCMGPSDPQPNWHLGMRGTQHR 588
            E W    + P  P+  W   MR  + R
Sbjct: 275 AELWAE--LEPKWPKAFWDDWMRRPEQR 300



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>MGAT1_MOUSE (P27808) Alpha-1,3-mannosyl-glycoprotein|
           2-beta-N-acetylglucosaminyltransferase (EC 2.4.1.101)
           (N-glycosyl-oligosaccharide-glycoprotein
           N-acetylglucosaminyltransferase I) (GNT-I) (GlcNAc-T I)
          Length = 447

 Score = 29.3 bits (64), Expect = 9.8
 Identities = 21/74 (28%), Positives = 31/74 (41%), Gaps = 6/74 (8%)
 Frame = +1

Query: 355 ELAPSTFEAFAKVPNVLRPHTQIFCTSEWVLGTREDLVKDIIAELR------PDLGEEWW 516
           E+AP  FE F     +LR    ++C S W    +E +V     EL       P LG   W
Sbjct: 215 EVAPDFFEYFQATYPLLRTDPSLWCVSAWNDNGKEQMVDSSKPELLYRTDFFPGLG---W 271

Query: 517 TYVCMGPSDPQPNW 558
             +    ++ +P W
Sbjct: 272 LLLADLWAELEPKW 285


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 95,934,956
Number of Sequences: 219361
Number of extensions: 2055520
Number of successful extensions: 4422
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4292
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4421
length of database: 80,573,946
effective HSP length: 107
effective length of database: 57,102,319
effective search space used: 5653129581
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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