Clone Name | baak4c22 |
---|---|
Clone Library Name | barley_pub |
>TL26_ARATH (P82538) Thylakoid lumenal 25.6 kDa protein, chloroplast precursor| Length = 230 Score = 129 bits (324), Expect = 5e-30 Identities = 61/158 (38%), Positives = 92/158 (58%) Frame = +2 Query: 14 AYAEEVPKNYRSYVDANDGYSYLYPADWRDFDFLGHDSAFKDRNVQLQSVRVAFIPTQKT 193 ++A E K + + D D Y++LYP W++ G D +KD L+SV V +PT K Sbjct: 72 SFAAESKKGFLAVSDNKDAYAFLYPFGWQEVVIEGQDKVYKDVIEPLESVSVNLVPTSKQ 131 Query: 194 DIRDLGPMDEAIFNLVNEVYAAPNQIPTIYEMQERTVDGRNYWTFEYDLEAPGYGVSAFA 373 I++ GP + L+ +V A PNQ T+ + E VDG+ Y+ FE+ ++A Y A Sbjct: 132 TIKEFGPPKQIAETLIKKVLAPPNQKTTLIDASEHDVDGKTYYQFEFTVQARNYTRHALG 191 Query: 374 TIAIGNGRYYTLIVTANERRWSRLRNKLKVVADSFKIS 487 TI + NG +YTL ANERRW +++++L V DSFKI+ Sbjct: 192 TITVFNGNFYTLTTGANERRWEKMKDRLHTVVDSFKIT 229
>TL215_ARATH (O23403) Thylakoid lumenal 21.5 kDa protein, chloroplast precursor| Length = 287 Score = 44.7 bits (104), Expect = 2e-04 Identities = 37/179 (20%), Positives = 70/179 (39%), Gaps = 28/179 (15%) Frame = +2 Query: 41 YRSYVDANDGYSYLYPADWRDFDFLGHDSAFKDRNVQLQSVRVAF---IPTQKTDIRDLG 211 +R Y+D DGYS+ YP +W G D F+D V +++ V F + T + DLG Sbjct: 109 FREYIDTFDGYSFKYPQNWIQVRGAGADIFFRDPVVLDENLSVEFSSPSSSNYTSLEDLG 168 Query: 212 PMDEA--------IFNLVNEVYAAPNQIPTIYEMQERTVDGRNYWTFEYDLEAPG----- 352 +E + ++ Q + DG+ Y+ E ++++ Sbjct: 169 SPEEVGKRVLRQYLTEFMSTRLGVKRQANILSTSSRVADDGKLYYQVEVNIKSYANNNEL 228 Query: 353 ------------YGVSAFATIAIGNGRYYTLIVTANERRWSRLRNKLKVVADSFKISDL 493 + A + + N R Y++ + E+ + L+ V DSF++ + Sbjct: 229 AVMPQDRVARLEWNRRYLAVLGVENDRLYSIRLQTPEKVFLEEEKDLRRVMDSFRVEKI 287
>PSBP_NARPS (Q40407) Oxygen-evolving enhancer protein 2, chloroplast precursor| (OEE2) (23 kDa subunit of oxygen evolving system of photosystem II) (OEC 23 kDa subunit) (23 kDa thylakoid membrane protein) Length = 265 Score = 41.2 bits (95), Expect = 0.002 Identities = 36/160 (22%), Positives = 65/160 (40%), Gaps = 22/160 (13%) Frame = +2 Query: 65 DGYSYLYPADW---RDFDFLGHDSAFKDRNVQLQSVRVAFIPTQKTDIRDLGPMDEAIFN 235 DG+ L P+ W ++ +F G ++D +V V PT K I+D G ++ + Sbjct: 103 DGFKILIPSKWNPSKEVEFPGQVLRYEDNFDTTSNVGVMVNPTDKKSIKDYGSPEQFLSQ 162 Query: 236 L-------------VNEVYAAPNQIPT--IYEMQERTVDGRNYWTFEY---DLEAPGYGV 361 + ++E PN + T I E V G++Y++ + G Sbjct: 163 VDYLLGKQAYFGKTISEGGFEPNAVRTANILETSTPVVGGKDYYSIHVLTRTADGDEGGK 222 Query: 362 SAFATIAIGNGRYYTLIVTANERRWSRLRNK-LKVVADSF 478 T + +G+ Y A ++RW + K ++ A SF Sbjct: 223 HLLITATVSDGKLYICKAQAGDKRWFKGAKKFVESAASSF 262
>PSBP_CUCSA (Q9SLQ8) Oxygen-evolving enhancer protein 2, chloroplast precursor| (OEE2) (23 kDa subunit of oxygen evolving system of photosystem II) (OEC 23 kDa subunit) (23 kDa thylakoid membrane protein) (OEC23) Length = 263 Score = 40.0 bits (92), Expect = 0.004 Identities = 38/175 (21%), Positives = 72/175 (41%), Gaps = 23/175 (13%) Frame = +2 Query: 32 PKNYRSYVD-ANDGYSYLYPADW---RDFDFLGHDSAFKDRNVQLQSVRVAFIPTQKTDI 199 PK+ Y+ + DG+ P+ W ++ +F G ++D ++ V PT K I Sbjct: 89 PKSNTDYLPYSGDGFKLSIPSKWNPSKEREFPGQVLRYEDNFDSNSNLSVIINPTDKKSI 148 Query: 200 RDLGPMDEAI----FNLVNEVYAA---------PNQIPT--IYEMQERTVDGRNYW---T 325 +D G +E + + L + Y P+ + T I E V+G++Y+ Sbjct: 149 KDFGSPEEFLSKVDYLLGKQAYFGKTASEGGFDPDAVATANILEATASNVNGKDYYFVSV 208 Query: 326 FEYDLEAPGYGVSAFATIAIGNGRYYTLIVTANERRWSR-LRNKLKVVADSFKIS 487 + G T + +G+ Y A ++RW + R ++ A SF ++ Sbjct: 209 LTRTADGDEGGKHQLITATVNDGKLYICKAQAGDKRWFKGARKFVEGAASSFSVA 263
>PSBP1_ARATH (Q42029) Oxygen-evolving enhancer protein 2-1, chloroplast| precursor (OEE2) (23 kDa subunit of oxygen evolving system of photosystem II) (OEC 23 kDa subunit) (23 kDa thylakoid membrane protein) Length = 263 Score = 38.9 bits (89), Expect = 0.008 Identities = 39/175 (22%), Positives = 67/175 (38%), Gaps = 23/175 (13%) Frame = +2 Query: 32 PKNYRSYVDAN-DGYSYLYPADW---RDFDFLGHDSAFKDRNVQLQSVRVAFIPTQKTDI 199 PK ++ N DG+ PA W ++ ++ G F+D ++ V PT K I Sbjct: 89 PKTNTDFLPYNGDGFKVQVPAKWNPSKEIEYPGQVLRFEDNFDATSNLNVMVTPTDKKSI 148 Query: 200 RDLGPMDEAI----FNLVNEVYAAP---------NQIPT--IYEMQERTVDGRNYW---T 325 D G +E + + L + Y N + T I E + V G+ Y+ Sbjct: 149 TDYGSPEEFLSQVNYLLGKQAYFGETASEGGFDNNAVATANILESSSQEVGGKPYYYLSV 208 Query: 326 FEYDLEAPGYGVSAFATIAIGNGRYYTLIVTANERRWSR-LRNKLKVVADSFKIS 487 + G T + G+ Y A ++RW + R ++ A SF ++ Sbjct: 209 LTRTADGDEGGKHQLITATVNGGKLYICKAQAGDKRWFKGARKFVESAATSFSVA 263
>PSBP3_TOBAC (Q04127) Oxygen-evolving enhancer protein 2-3, chloroplast| precursor (OEE2) (23 kDa subunit of oxygen evolving system of photosystem II) (OEC 23 kDa subunit) (23 kDa thylakoid membrane) Length = 266 Score = 37.7 bits (86), Expect = 0.019 Identities = 34/163 (20%), Positives = 62/163 (38%), Gaps = 22/163 (13%) Frame = +2 Query: 65 DGYSYLYPADW---RDFDFLGHDSAFKDRNVQLQSVRVAFIPTQKTDIRDLGPMDEAI-- 229 DG+ P+ W ++ ++ G F+D +V VA PT K I D G ++ + Sbjct: 104 DGFKLQIPSKWNPNKEVEYPGQVLRFEDNFDATSNVIVAITPTDKKSITDFGSPEQFLSQ 163 Query: 230 --FNLVNEVYAAPNQ-----------IPTIYEMQERTVDGRNYWTFEY---DLEAPGYGV 361 + L + Y+ I + E V G+ Y+ + G Sbjct: 164 VDYLLGRQAYSGKTDSEGGFESDAVAIANVLETSTAEVGGKQYYYLSILTRTADGNEGGK 223 Query: 362 SAFATIAIGNGRYYTLIVTANERRWSRLRNK-LKVVADSFKIS 487 T + +G+ Y A ++RW + K ++ A SF ++ Sbjct: 224 HQLVTATVNDGKLYICKAQAGDKRWFKGAKKFVENTATSFSLA 266
>PSBP2_TOBAC (P18212) Oxygen-evolving enhancer protein 2-2, chloroplast| precursor (OEE2) (23 kDa subunit of oxygen evolving system of photosystem II) (OEC 23 kDa subunit) (23 kDa thylakoid membrane) Length = 265 Score = 37.0 bits (84), Expect = 0.032 Identities = 34/163 (20%), Positives = 62/163 (38%), Gaps = 22/163 (13%) Frame = +2 Query: 65 DGYSYLYPADW---RDFDFLGHDSAFKDRNVQLQSVRVAFIPTQKTDIRDLGPMDEAI-- 229 DG+ P+ W ++ ++ G F+D +V VA PT K I D G ++ + Sbjct: 103 DGFKLQIPSKWNPNKEVEYPGQVLRFEDNFDATSNVIVAITPTDKKSITDFGSPEQFLSQ 162 Query: 230 --FNLVNEVYAAPNQ-----------IPTIYEMQERTVDGRNYW---TFEYDLEAPGYGV 361 + L + Y+ I + E V G+ Y+ + G Sbjct: 163 VDYLLGRQAYSGKTDSEGGFESDAVAIANVLETSSAEVGGKPYYYLSVLTRTADGNEGGK 222 Query: 362 SAFATIAIGNGRYYTLIVTANERRWSRLRNK-LKVVADSFKIS 487 T + +G+ Y A ++RW + K ++ A SF ++ Sbjct: 223 HQLITATVNDGKLYICKAQAGDKRWFKGAKKFVENTATSFSLA 265
>TL30_ARATH (O49292) Thylakoid lumenal 29.8 kDa protein, chloroplast precursor| Length = 274 Score = 36.6 bits (83), Expect = 0.042 Identities = 26/60 (43%), Positives = 32/60 (53%) Frame = +2 Query: 305 DGRNYWTFEYDLEAPGYGVSAFATIAIGNGRYYTLIVTANERRWSRLRNKLKVVADSFKI 484 DGR Y+ FE LE P ++A A GN R Y VT N +W R LK +A SF+I Sbjct: 220 DGRLYYQFE--LEPPHVLITATAA---GN-RLYLFSVTGNGLQWKRHYKDLKRIASSFRI 273
>TL19_ARATH (P82658) Thylakoid lumenal 19 kDa protein, chloroplast precursor| (P19) Length = 229 Score = 35.8 bits (81), Expect = 0.071 Identities = 40/166 (24%), Positives = 66/166 (39%), Gaps = 18/166 (10%) Frame = +2 Query: 38 NYRSYVDANDG-----YSYLYPADWRDF-------DFLGHDSAFKDRNVQLQSVRVAFIP 181 NY Y +D Y Y P W++ G DS F + + + + F+ Sbjct: 70 NYGGYGGNSDRKTSAEYVYDVPEGWKERLVSKVEKGTNGTDSEFYNPKKKTEKEYLTFL- 128 Query: 182 TQKTDIRDLGPMDEAIFNL------VNEVYAAPNQIPTIYEMQERTVDGRNYWTFEYDLE 343 R L P D + NL + ++ A +++ + E ++ T G+ Y+ +E D Sbjct: 129 ---AGFRQLAPRDVILNNLALSDVELQDLIAGADKVVS-EERKDET--GQVYYLYEID-- 180 Query: 344 APGYGVSAFATIAIGNGRYYTLIVTANERRWSRLRNKLKVVADSFK 481 G G + T+ R Y V A W+R + L + DSFK Sbjct: 181 --GVGKHSLITVTCSKNRLYAHFVNAPAPEWNRDHDTLTHLRDSFK 224
>PSBP_CHLRE (P11471) Oxygen-evolving enhancer protein 2, chloroplast precursor| (OEE2) Length = 245 Score = 35.0 bits (79), Expect = 0.12 Identities = 40/167 (23%), Positives = 70/167 (41%), Gaps = 25/167 (14%) Frame = +2 Query: 59 ANDGYSYLYPADW---RDFDFLGHDSAFKDRNVQLQSVRVAFIPTQKTDIRDLGPMDEAI 229 A DG++ L PA W ++ DF G ++D + ++ V T K I D G D+ + Sbjct: 79 AGDGFALLLPAKWNPSKENDFPGVILRYEDNFDAVNNLVVIAQDTDKKAIADFGSQDKFL 138 Query: 230 ----FNLVNEVYA---------APNQIPTIYEMQERTV---DGRNYWTFEY-----DLEA 346 + L + Y+ APN++ + T G+ Y+ +E D + Sbjct: 139 ESVSYLLGKQAYSGETQSEGGFAPNRVSAASLLDVSTTTDKKGKTYYKYELLVRSADGDE 198 Query: 347 PGYGVSAFATIAIGNGRYYTLIVTANERRWSRLRNKLKVVA-DSFKI 484 G AT+ N + Y + + ++RW + K + A DSF + Sbjct: 199 GGRHQLIGATVGSDN-KLYIIKIQIGDKRWFKGAKKEAMGAFDSFTV 244
>PSBP2_ARATH (O49344) Oxygen-evolving enhancer protein 2-2, chloroplast| precursor (OEE2) (23 kDa subunit of oxygen evolving system of photosystem II) (OEC 23 kDa subunit) (23 kDa thylakoid membrane protein) Length = 265 Score = 35.0 bits (79), Expect = 0.12 Identities = 33/163 (20%), Positives = 62/163 (38%), Gaps = 22/163 (13%) Frame = +2 Query: 65 DGYSYLYPADW---RDFDFLGHDSAFKDRNVQLQSVRVAFIPTQKTDIRDLGPMDEAI-- 229 +G+ P+ W ++ ++ G F+D +V V PT K I D G ++ + Sbjct: 103 EGFKIQIPSKWNPSKEIEYPGQVLRFEDNFDATSNVSVMITPTDKKSITDYGSPEQFLSQ 162 Query: 230 --FNLVNEVYAA---------PNQIPT--IYEMQERTVDGRNYW---TFEYDLEAPGYGV 361 + L + Y N + T I E + + G+ Y+ + G Sbjct: 163 VNYLLGKQAYVGETASEGGFDANAVATANILETSTQEIGGKEYYYLSVLTRTADGDEGGK 222 Query: 362 SAFATIAIGNGRYYTLIVTANERRWSR-LRNKLKVVADSFKIS 487 T + G+ Y A ++RW + R ++ A SF ++ Sbjct: 223 HQLITATVNGGKLYICKAQAGDKRWFKGARKFVENAATSFSVA 265
>YTBQ_BACSU (P53560) Hypothetical protein ytbQ| Length = 253 Score = 32.3 bits (72), Expect = 0.79 Identities = 22/73 (30%), Positives = 32/73 (43%) Frame = +2 Query: 248 VYAAPNQIPTIYEMQERTVDGRNYWTFEYDLEAPGYGVSAFATIAIGNGRYYTLIVTANE 427 V+A+ N + +YE R++ GR T +Y L YGV + IG+ Y Sbjct: 108 VFASSNHVTDVYEKDGRSLLGREITTSDYPLSKNLYGVLKLTSEQIGHLFY--------- 158 Query: 428 RRWSRLRNKLKVV 466 L NKL V+ Sbjct: 159 -----LENKLSVI 166
>YNL5_CAEEL (Q21955) Hypothetical protein R12B2.5| Length = 780 Score = 31.2 bits (69), Expect = 1.8 Identities = 14/36 (38%), Positives = 22/36 (61%) Frame = -3 Query: 368 TPRRRSPAPPDRTQTSSSSCHPPCALAFHRSSVSGS 261 TP R+P PPD TS+ + +PP +A ++S + S Sbjct: 104 TPGYRAPVPPDPQPTSAQARNPPVTVATTQASTTPS 139
>RSP7_CAEEL (O01159) Probable splicing factor, arginine/serine-rich 7 (p54)| Length = 452 Score = 31.2 bits (69), Expect = 1.8 Identities = 17/34 (50%), Positives = 24/34 (70%), Gaps = 1/34 (2%) Frame = +2 Query: 131 FKDRNVQLQSVRVAFI-PTQKTDIRDLGPMDEAI 229 FK+R +++Q RVA I P KTD + LG ++EAI Sbjct: 228 FKERPLKIQHSRVAIIKPQAKTDEQALGEIEEAI 261
>SRRM1_CHICK (Q5ZMJ9) Serine/arginine repetitive matrix protein 1| Length = 888 Score = 30.0 bits (66), Expect = 3.9 Identities = 13/27 (48%), Positives = 17/27 (62%) Frame = -3 Query: 380 RSSQTPRRRSPAPPDRTQTSSSSCHPP 300 RS PRRRSP+PP R ++ S + P Sbjct: 565 RSPSLPRRRSPSPPPRRRSPSPRRYSP 591
>CG117_HUMAN (Q9Y3C1) Protein CGI-117| Length = 178 Score = 30.0 bits (66), Expect = 3.9 Identities = 12/30 (40%), Positives = 18/30 (60%) Frame = +2 Query: 17 YAEEVPKNYRSYVDANDGYSYLYPADWRDF 106 Y ++ PK RS ++ Y YPA+W+DF Sbjct: 140 YYQDTPKQIRSKINV---YKRFYPAEWQDF 166
>BIR1F_MOUSE (Q9JIB6) Baculoviral IAP repeat-containing protein 1f (Neuronal| apoptosis inhibitory protein 6) Length = 1403 Score = 29.3 bits (64), Expect = 6.7 Identities = 22/91 (24%), Positives = 37/91 (40%), Gaps = 5/91 (5%) Frame = +2 Query: 14 AYAEEVPKNY-----RSYVDANDGYSYLYPADWRDFDFLGHDSAFKDRNVQLQSVRVAFI 178 A EE+ KNY R+ D ++GY L P + I Sbjct: 965 AQDEEIIKNYENIWPRALPDISEGYWNLSPKPCK-------------------------I 999 Query: 179 PTQKTDIRDLGPMDEAIFNLVNEVYAAPNQI 271 P + + ++GP D+A+ ++ EV++A I Sbjct: 1000 PKLEVQVNNMGPADQALLQVLMEVFSASQSI 1030
>BIR1G_MOUSE (Q9JIB3) Baculoviral IAP repeat-containing protein 1g (Neuronal| apoptosis inhibitory protein 7) Length = 1402 Score = 29.3 bits (64), Expect = 6.7 Identities = 22/91 (24%), Positives = 37/91 (40%), Gaps = 5/91 (5%) Frame = +2 Query: 14 AYAEEVPKNY-----RSYVDANDGYSYLYPADWRDFDFLGHDSAFKDRNVQLQSVRVAFI 178 A EE+ KNY R+ D ++GY L P + I Sbjct: 965 AQDEEIIKNYENIWPRALPDISEGYWNLSPKPCK-------------------------I 999 Query: 179 PTQKTDIRDLGPMDEAIFNLVNEVYAAPNQI 271 P + + ++GP D+A+ ++ EV++A I Sbjct: 1000 PKLEVQVNNMGPADQALLQVLMEVFSASQSI 1030
>PERT_PIG (P09933) Thyroid peroxidase precursor (EC 1.11.1.8) (TPO)| Length = 926 Score = 28.9 bits (63), Expect = 8.7 Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 1/52 (1%) Frame = -3 Query: 368 TPRRRSPAPPDRTQTSSSSCHPPCALAFHRSSVS-GSGQRTLRLPN*RWPHP 216 T RSP P + T++S L F+RSS + GSG++ + N W P Sbjct: 262 TCENRSPCFPIQLPTNASGAAGATCLPFYRSSAACGSGRQGALVGNLSWAAP 313
>FZD8_HUMAN (Q9H461) Frizzled 8 precursor (Frizzled-8) (Fz-8) (hFz8)| Length = 694 Score = 28.9 bits (63), Expect = 8.7 Identities = 17/42 (40%), Positives = 20/42 (47%), Gaps = 2/42 (4%) Frame = -3 Query: 377 SSQTPRRRSPAPPDRTQTSSSSCH--PPCALAFHRSSVSGSG 258 ++ +P RR P PP Q S S H PP A HR G G Sbjct: 159 AAPSPPRRLPPPPPGEQPPSGSGHGRPPGARPPHRGGGRGGG 200
>PNCB_NEIMB (Q9JYM9) Nicotinate phosphoribosyltransferase (EC 2.4.2.11)| (NAPRTase) Length = 402 Score = 28.9 bits (63), Expect = 8.7 Identities = 23/90 (25%), Positives = 41/90 (45%), Gaps = 6/90 (6%) Frame = +2 Query: 62 NDGYSYLYPADWRDFDFLGHDSAFKDRNVQLQSVRVAFIPTQKTDIRDLGPMDEAIF--- 232 +D YL + DF+ + F+ +Q + V + + +IR GPM +A+F Sbjct: 67 HDELGYLRSLRFIKSDFVDYLELFQ---LQRRFVEIGTDDKDRLNIRIEGPMIQAMFFEI 123 Query: 233 ---NLVNEVYAAPNQIPTIYEMQERTVDGR 313 +VNE+Y + P + E ER + + Sbjct: 124 FILAIVNELYFRRLETPAVIEEGERRLQAK 153
>JHD1_EMENI (Q5AW75) JmjC domain-containing histone demethylation protein 1 (EC| 1.14.11.-) Length = 1407 Score = 28.9 bits (63), Expect = 8.7 Identities = 19/63 (30%), Positives = 29/63 (46%), Gaps = 7/63 (11%) Frame = -3 Query: 374 SQTPRRRSPAPPDRTQTSSSSCHPPCALAFHRS-------SVSGSGQRTLRLPN*RWPHP 216 S+ PR R+P+PP R S PC+ A +R+ S S + P + P P Sbjct: 13 SRPPRYRTPSPPRRAVEPIS----PCSTADYRTYRASREISASATSDHVRSTPTDKRPSP 68 Query: 215 SDL 207 +D+ Sbjct: 69 ADV 71
>PRG4_HUMAN (Q92954) Proteoglycan-4 precursor (Lubricin) (Megakaryocyte| stimulating factor) (Superficial zone proteoglycan) [Contains: Proteoglycan-4 C-terminal part] Length = 1404 Score = 28.9 bits (63), Expect = 8.7 Identities = 17/71 (23%), Positives = 28/71 (39%), Gaps = 5/71 (7%) Frame = +2 Query: 239 VNEVYAAPNQIPTIY-----EMQERTVDGRNYWTFEYDLEAPGYGVSAFATIAIGNGRYY 403 + EV+ P+ I T++ E + YW F D++ GY F G+ Sbjct: 1185 ITEVWGIPSPIDTVFTRCNCEGKTFFFKDSQYWRFTNDIKDAGYPKPIFKGFGGLTGQIV 1244 Query: 404 TLIVTANERRW 436 + TA + W Sbjct: 1245 AALSTAKYKNW 1255 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 70,321,471 Number of Sequences: 219361 Number of extensions: 1483787 Number of successful extensions: 4408 Number of sequences better than 10.0: 23 Number of HSP's better than 10.0 without gapping: 4115 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4392 length of database: 80,573,946 effective HSP length: 104 effective length of database: 57,760,402 effective search space used: 3869946934 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)