>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score =  113 bits (57), Expect = 6e-22
 Identities = 108/125 (86%)
 Strand = Plus / Plus

                                                                           
Query: 100     ggatttcgacttcttggggcatgattcagcgttcaaggaccgtaatgtgcagctgcagtc 159
               ||||||||||||| |||||||||||||||||||||| || ||||||||   |||||||| 
Sbjct: 9528290 ggatttcgacttcctggggcatgattcagcgttcaaagatcgtaatgtagcgctgcagtg 9528349

                                                                           
Query: 160     tgtccgtgtggccttcattcctactcagaaaacagacattcgtgacctaggtccgatgga 219
                || ||||||| |||||||||||||   |||||||| || |||||||| ||||| |||||
Sbjct: 9528350 cgtgcgtgtgggcttcattcctactacaaaaacagatatccgtgaccttggtccaatgga 9528409

                    
Query: 220     tgagg 224
               |||||
Sbjct: 9528410 tgagg 9528414



 Score =  109 bits (55), Expect = 9e-21
 Identities = 85/95 (89%)
 Strand = Plus / Plus

                                                                           
Query: 396     ggtactacacgctgatcgtgaccgctaacgagcggcggtggagcaggctgcgcaacaagc 455
               |||||||||| ||||||||||| || ||||||||||| ||||| |||||| | |||| ||
Sbjct: 9529056 ggtactacacactgatcgtgacggcgaacgagcggcgatggagtaggctgaggaacaggc 9529115

                                                  
Query: 456     tcaaagtcgtcgccgactccttcaagatctccgac 490
               |||||||||||||||||||||||||| | ||||||
Sbjct: 9529116 tcaaagtcgtcgccgactccttcaagctgtccgac 9529150



 Score =  101 bits (51), Expect = 2e-18
 Identities = 75/83 (90%)
 Strand = Plus / Plus

                                                                           
Query: 294     agcgcacggtggatggcaggaactactggacgtttgagtacgatctggaggcgccgggct 353
               ||||||| |||||||||| |||||||||||| |||||||||||||| ||||| |||||||
Sbjct: 9528801 agcgcaccgtggatggcaagaactactggacatttgagtacgatcttgaggccccgggct 9528860

                                      
Query: 354     acggcgtctcggcgtttgcgacg 376
               ||||||| || || |||||||||
Sbjct: 9528861 acggcgtgtccgcatttgcgacg 9528883



 Score = 42.1 bits (21), Expect = 1.8
 Identities = 33/37 (89%)
 Strand = Plus / Plus

                                                    
Query: 65      gatggatactcgtacctctacccagctgattggaggg 101
               |||||||| || ||||| || ||||||||||||||||
Sbjct: 9528145 gatggatattcatacctgtatccagctgattggaggg 9528181

>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
               sequence
          Length = 36192742

 Score =  113 bits (57), Expect = 6e-22
 Identities = 108/125 (86%)
 Strand = Plus / Plus

                                                                           
Query: 100     ggatttcgacttcttggggcatgattcagcgttcaaggaccgtaatgtgcagctgcagtc 159
               ||||||||||||| |||||||||||||||||||||| || ||||||||   |||||||| 
Sbjct: 9526411 ggatttcgacttcctggggcatgattcagcgttcaaagatcgtaatgtagcgctgcagtg 9526470

                                                                           
Query: 160     tgtccgtgtggccttcattcctactcagaaaacagacattcgtgacctaggtccgatgga 219
                || ||||||| |||||||||||||   |||||||| || |||||||| ||||| |||||
Sbjct: 9526471 cgtgcgtgtgggcttcattcctactacaaaaacagatatccgtgaccttggtccaatgga 9526530

                    
Query: 220     tgagg 224
               |||||
Sbjct: 9526531 tgagg 9526535



 Score =  109 bits (55), Expect = 9e-21
 Identities = 85/95 (89%)
 Strand = Plus / Plus

                                                                           
Query: 396     ggtactacacgctgatcgtgaccgctaacgagcggcggtggagcaggctgcgcaacaagc 455
               |||||||||| ||||||||||| || ||||||||||| ||||| |||||| | |||| ||
Sbjct: 9527177 ggtactacacactgatcgtgacggcgaacgagcggcgatggagtaggctgaggaacaggc 9527236

                                                  
Query: 456     tcaaagtcgtcgccgactccttcaagatctccgac 490
               |||||||||||||||||||||||||| | ||||||
Sbjct: 9527237 tcaaagtcgtcgccgactccttcaagctgtccgac 9527271



 Score =  101 bits (51), Expect = 2e-18
 Identities = 75/83 (90%)
 Strand = Plus / Plus

                                                                           
Query: 294     agcgcacggtggatggcaggaactactggacgtttgagtacgatctggaggcgccgggct 353
               ||||||| |||||||||| |||||||||||| |||||||||||||| ||||| |||||||
Sbjct: 9526922 agcgcaccgtggatggcaagaactactggacatttgagtacgatcttgaggccccgggct 9526981

                                      
Query: 354     acggcgtctcggcgtttgcgacg 376
               ||||||| || || |||||||||
Sbjct: 9526982 acggcgtgtccgcatttgcgacg 9527004



 Score = 42.1 bits (21), Expect = 1.8
 Identities = 33/37 (89%)
 Strand = Plus / Plus

                                                    
Query: 65      gatggatactcgtacctctacccagctgattggaggg 101
               |||||||| || ||||| || ||||||||||||||||
Sbjct: 9526266 gatggatattcatacctgtatccagctgattggaggg 9526302

>gb|AC137069.2| Genomic sequence for Oryza sativa, Nipponbare strain, clone
             OSJNBa0009C19, from chromosome 3, complete sequence
          Length = 131709

 Score =  113 bits (57), Expect = 6e-22
 Identities = 108/125 (86%)
 Strand = Plus / Minus

                                                                         
Query: 100   ggatttcgacttcttggggcatgattcagcgttcaaggaccgtaatgtgcagctgcagtc 159
             ||||||||||||| |||||||||||||||||||||| || ||||||||   |||||||| 
Sbjct: 84396 ggatttcgacttcctggggcatgattcagcgttcaaagatcgtaatgtagcgctgcagtg 84337

                                                                         
Query: 160   tgtccgtgtggccttcattcctactcagaaaacagacattcgtgacctaggtccgatgga 219
              || ||||||| |||||||||||||   |||||||| || |||||||| ||||| |||||
Sbjct: 84336 cgtgcgtgtgggcttcattcctactacaaaaacagatatccgtgaccttggtccaatgga 84277

                  
Query: 220   tgagg 224
             |||||
Sbjct: 84276 tgagg 84272



 Score =  109 bits (55), Expect = 9e-21
 Identities = 85/95 (89%)
 Strand = Plus / Minus

                                                                         
Query: 396   ggtactacacgctgatcgtgaccgctaacgagcggcggtggagcaggctgcgcaacaagc 455
             |||||||||| ||||||||||| || ||||||||||| ||||| |||||| | |||| ||
Sbjct: 83630 ggtactacacactgatcgtgacggcgaacgagcggcgatggagtaggctgaggaacaggc 83571

                                                
Query: 456   tcaaagtcgtcgccgactccttcaagatctccgac 490
             |||||||||||||||||||||||||| | ||||||
Sbjct: 83570 tcaaagtcgtcgccgactccttcaagctgtccgac 83536



 Score =  101 bits (51), Expect = 2e-18
 Identities = 75/83 (90%)
 Strand = Plus / Minus

                                                                         
Query: 294   agcgcacggtggatggcaggaactactggacgtttgagtacgatctggaggcgccgggct 353
             ||||||| |||||||||| |||||||||||| |||||||||||||| ||||| |||||||
Sbjct: 83885 agcgcaccgtggatggcaagaactactggacatttgagtacgatcttgaggccccgggct 83826

                                    
Query: 354   acggcgtctcggcgtttgcgacg 376
             ||||||| || || |||||||||
Sbjct: 83825 acggcgtgtccgcatttgcgacg 83803



 Score = 42.1 bits (21), Expect = 1.8
 Identities = 33/37 (89%)
 Strand = Plus / Minus

                                                  
Query: 65    gatggatactcgtacctctacccagctgattggaggg 101
             |||||||| || ||||| || ||||||||||||||||
Sbjct: 84541 gatggatattcatacctgtatccagctgattggaggg 84505

>gb|AC087698.5| Homo sapiens chromosome 8, clone RP11-25K19, complete sequence
          Length = 150750

 Score = 44.1 bits (22), Expect = 0.45
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 427   gcggcggtggagcaggctgcgc 448
             ||||||||||||||||||||||
Sbjct: 23399 gcggcggtggagcaggctgcgc 23378

>emb|CR617952.1| full-length cDNA clone CS0DJ008YF10 of T cells (Jurkat cell line)
           Cot 10-normalized of Homo sapiens (human)
          Length = 1537

 Score = 44.1 bits (22), Expect = 0.45
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 427 gcggcggtggagcaggctgcgc 448
           ||||||||||||||||||||||
Sbjct: 27  gcggcggtggagcaggctgcgc 6

>gb|AC090152.4| Homo sapiens chromosome 8, clone RP11-554M1, complete sequence
          Length = 118755

 Score = 44.1 bits (22), Expect = 0.45
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 427  gcggcggtggagcaggctgcgc 448
            ||||||||||||||||||||||
Sbjct: 2103 gcggcggtggagcaggctgcgc 2124

>emb|AJ315949.1|HSA315949 Homo sapiens DL8Q12 gene for hypothetical protein, exons 1-2
          Length = 2935

 Score = 44.1 bits (22), Expect = 0.45
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 427 gcggcggtggagcaggctgcgc 448
           ||||||||||||||||||||||
Sbjct: 176 gcggcggtggagcaggctgcgc 155

>emb|AL513406.1|CNS07EFT Human DNA sequence chromosome 8 of Homo sapiens (human)
          Length = 204955

 Score = 44.1 bits (22), Expect = 0.45
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 427    gcggcggtggagcaggctgcgc 448
              ||||||||||||||||||||||
Sbjct: 128825 gcggcggtggagcaggctgcgc 128846

>ref|XM_345253.2| PREDICTED: Rattus norvegicus similar to CGI-143 protein (predicted)
           (LOC365875), mRNA
          Length = 746

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 430 gcggtggagcaggctgcgcaacaag 454
           |||||| ||||||||||||||||||
Sbjct: 28  gcggtgcagcaggctgcgcaacaag 52

>gb|CP000027.1| Dehalococcoides ethenogenes 195, complete genome
          Length = 1469720

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 255    ctgccccgaaccagataccg 274
              ||||||||||||||||||||
Sbjct: 203012 ctgccccgaaccagataccg 202993

>ref|NM_124140.1| Arabidopsis thaliana transcription factor AT5G47660 mRNA, complete
           cds
          Length = 1197

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 455 ctcaaagtcgtcgccgactc 474
           ||||||||||||||||||||
Sbjct: 51  ctcaaagtcgtcgccgactc 32

>emb|AL645784.20| Mouse DNA sequence from clone RP23-11C7 on chromosome 11 Contains a zinc
              finger protein pseudogene, a chaperonin subunit 7 (eta)
              (Cct7) pseudogene, a novel pseudogene and a CpG island,
              complete sequence
          Length = 217352

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 277    gatctatgaaatgcaagagc 296
              ||||||||||||||||||||
Sbjct: 137545 gatctatgaaatgcaagagc 137564

>gb|DQ108785.1| Arabidopsis thaliana clone 24170 mRNA sequence
          Length = 787

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 455 ctcaaagtcgtcgccgactc 474
           ||||||||||||||||||||
Sbjct: 381 ctcaaagtcgtcgccgactc 400

>emb|AL929152.24| Zebrafish DNA sequence from clone CH211-59L24, complete sequence
          Length = 172954

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 17    tatgctgaagaagtaccaaa 36
             ||||||||||||||||||||
Sbjct: 11364 tatgctgaagaagtaccaaa 11345

>dbj|AB025628.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MNJ7
          Length = 80117

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 455   ctcaaagtcgtcgccgactc 474
             ||||||||||||||||||||
Sbjct: 73001 ctcaaagtcgtcgccgactc 72982


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,918,182
Number of Sequences: 3902068
Number of extensions: 2918182
Number of successful extensions: 47200
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 47113
Number of HSP's gapped (non-prelim): 87
length of query: 517
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 494
effective length of database: 17,143,297,704
effective search space: 8468789065776
effective search space used: 8468789065776
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)