>UCRQ_SOLTU (P46269) Ubiquinol-cytochrome c reductase complex|
           ubiquinone-binding protein QP-C (EC 1.10.2.2)
           (Ubiquinol-cytochrome c reductase complex 8.2 kDa
           protein)
          Length = 71

 Score =  118 bits (295), Expect = 1e-26
 Identities = 51/71 (71%), Positives = 62/71 (87%)
 Frame = +3

Query: 96  GKMPVRMKAVVYALSPFQQQVMPGLWKDITTKIHHKVSENWISATLLITPVVGTYQYAMY 275
           GK PV++KAVVYA+SPFQQ++MPGLWKD+  KIHHKVSENWISATLL+ P+VGTY Y  +
Sbjct: 1   GKQPVKLKAVVYAISPFQQKIMPGLWKDLPGKIHHKVSENWISATLLLGPLVGTYSYVQH 60

Query: 276 YKEQEKLSHRY 308
           + E+EKL HRY
Sbjct: 61  FLEKEKLEHRY 71

>POLG_DEN2T (P27914) Genome polyprotein [Contains: Major envelope protein E;|
           Nonstructural protein 1 (NS1); Nonstructural protein 2A
           (NS2A); Flavivirin protease NS3 catalytic subunit (EC
           3.4.21.91)] (Fragments)
          Length = 1683

 Score = 30.4 bits (67), Expect = 3.5
 Identities = 11/32 (34%), Positives = 21/32 (65%)
 Frame = +3

Query: 168 LWKDITTKIHHKVSENWISATLLITPVVGTYQ 263
           +WK IT++++H +SEN +  T++   + G  Q
Sbjct: 562 MWKQITSELNHILSENEVKLTIMTGDIKGIMQ 593

>POLG_DEN2P (P12823) Genome polyprotein [Contains: Capsid protein C (Core|
           protein); Envelope protein M (Matrix protein); Major
           envelope protein E; Nonstructural protein 1 (NS1);
           Nonstructural protein 2A (NS2A); Flavivirin protease
           NS2B regulatory subunit;
          Length = 3388

 Score = 30.4 bits (67), Expect = 3.5
 Identities = 11/32 (34%), Positives = 21/32 (65%)
 Frame = +3

Query: 168 LWKDITTKIHHKVSENWISATLLITPVVGTYQ 263
           +WK IT++++H +SEN +  T++   + G  Q
Sbjct: 842 MWKQITSELNHILSENEVKLTIMTGDIKGIMQ 873

>UCRQ_SCHPO (P50523) Ubiquinol-cytochrome c reductase complex|
           ubiquinone-binding protein QP-C (EC 1.10.2.2)
           (Ubiquinol-cytochrome c reductase complex 11 kDa
           protein) (Complex III subunit VIII)
          Length = 92

 Score = 30.0 bits (66), Expect = 4.5
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = +3

Query: 105 PVRMKAVVYALSPFQQQVMPGLWKDITTKIHHKV 206
           P +   + Y+LSPFQQ+ M G +K  T  +  +V
Sbjct: 20  PKQKGIITYSLSPFQQRPMAGFFKTSTQNMFRRV 53

>POLG_DEN1S (P33478) Genome polyprotein [Contains: Capsid protein C (Core|
           protein); Envelope protein M (Matrix protein); Major
           envelope protein E; Nonstructural protein 1 (NS1);
           Nonstructural protein 2A (NS2A); Flavivirin protease
           NS2B regulatory subunit;
          Length = 3396

 Score = 30.0 bits (66), Expect = 4.5
 Identities = 12/47 (25%), Positives = 25/47 (53%)
 Frame = +3

Query: 168 LWKDITTKIHHKVSENWISATLLITPVVGTYQYAMYYKEQEKLSHRY 308
           +WK I+ +++H + EN +  T+++  VVG           + + H+Y
Sbjct: 841 MWKQISNELNHILLENDMKFTVVVGDVVGILAQGKKMIRPQPMEHKY 887

>POLG_DEN2N (P14340) Genome polyprotein [Contains: Capsid protein C (Core|
           protein); Envelope protein M (Matrix protein); Major
           envelope protein E; Nonstructural protein 1 (NS1);
           Nonstructural protein 2A (NS2A); Flavivirin protease
           NS2B regulatory subunit;
          Length = 3391

 Score = 29.6 bits (65), Expect = 5.9
 Identities = 11/32 (34%), Positives = 20/32 (62%)
 Frame = +3

Query: 168 LWKDITTKIHHKVSENWISATLLITPVVGTYQ 263
           +WK IT +++H +SEN +  T++   + G  Q
Sbjct: 842 MWKQITPELNHILSENEVKLTIMTGDIKGIMQ 873

>POLG_DEN2J (P07564) Genome polyprotein [Contains: Capsid protein C (Core|
           protein); Envelope protein M (Matrix protein); Major
           envelope protein E; Nonstructural protein 1 (NS1);
           Nonstructural protein 2A (NS2A); Flavivirin protease
           NS2B regulatory subunit;
          Length = 3391

 Score = 29.6 bits (65), Expect = 5.9
 Identities = 11/32 (34%), Positives = 20/32 (62%)
 Frame = +3

Query: 168 LWKDITTKIHHKVSENWISATLLITPVVGTYQ 263
           +WK IT +++H +SEN +  T++   + G  Q
Sbjct: 842 MWKQITPELNHILSENEVKLTIMTGDIKGIMQ 873

>POLG_DEN27 (P29991) Genome polyprotein [Contains: Capsid protein C (Core|
           protein); Envelope protein M (Matrix protein); Major
           envelope protein E; Nonstructural protein 1 (NS1);
           Nonstructural protein 2A (NS2A); Flavivirin protease
           NS2B regulatory subunit;
          Length = 3391

 Score = 29.6 bits (65), Expect = 5.9
 Identities = 11/32 (34%), Positives = 20/32 (62%)
 Frame = +3

Query: 168 LWKDITTKIHHKVSENWISATLLITPVVGTYQ 263
           +WK IT +++H +SEN +  T++   + G  Q
Sbjct: 842 MWKQITPELNHILSENEVKLTIMTGDIKGIMQ 873

>POLG_DEN26 (P29990) Genome polyprotein [Contains: Capsid protein C (Core|
           protein); Envelope protein M (Matrix protein); Major
           envelope protein E; Nonstructural protein 1 (NS1);
           Nonstructural protein 2A (NS2A); Flavivirin protease
           NS2B regulatory subunit;
          Length = 3391

 Score = 29.6 bits (65), Expect = 5.9
 Identities = 11/32 (34%), Positives = 20/32 (62%)
 Frame = +3

Query: 168 LWKDITTKIHHKVSENWISATLLITPVVGTYQ 263
           +WK IT +++H +SEN +  T++   + G  Q
Sbjct: 842 MWKQITPELNHILSENEVKLTIMTGDIKGIMQ 873

>DPOE_SCHPO (P87154) DNA polymerase epsilon, catalytic subunit A (EC 2.7.7.7)|
            (DNA polymerase II subunit A)
          Length = 2199

 Score = 29.3 bits (64), Expect = 7.8
 Identities = 15/34 (44%), Positives = 19/34 (55%)
 Frame = -3

Query: 247  TGVMRSVAEIQFSETLWWILVVMSFHRPGITCCW 146
            T V++S AE+ F E LW IL +     PGI   W
Sbjct: 1282 TNVLQSSAEVMF-ENLWHILQIRETDVPGILHAW 1314

>ARRB_DROMI (P19108) Phosrestin-1 (Phosrestin I) (Arrestin B) (Arrestin-2) (49|
           kDa arrestin-like protein)
          Length = 401

 Score = 29.3 bits (64), Expect = 7.8
 Identities = 16/36 (44%), Positives = 26/36 (72%), Gaps = 3/36 (8%)
 Frame = -2

Query: 470 KVSLQVTLTASLHMHGKR--KRVQLGNDS-KNVKSL 372
           K+SL+VTL   ++ HG++    VQ+ N+S K+VKS+
Sbjct: 195 KISLEVTLDREIYYHGEKTAATVQVSNNSKKSVKSI 230

>ARRB_DROME (P19107) Phosrestin-1 (Phosrestin I) (Arrestin B) (Arrestin-2) (49|
           kDa arrestin-like protein)
          Length = 401

 Score = 29.3 bits (64), Expect = 7.8
 Identities = 16/36 (44%), Positives = 26/36 (72%), Gaps = 3/36 (8%)
 Frame = -2

Query: 470 KVSLQVTLTASLHMHGKR--KRVQLGNDS-KNVKSL 372
           K+SL+VTL   ++ HG++    VQ+ N+S K+VKS+
Sbjct: 195 KISLEVTLDREIYYHGEKTAATVQVSNNSKKSVKSI 230


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 64,010,322
Number of Sequences: 219361
Number of extensions: 1115353
Number of successful extensions: 3015
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 2982
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3015
length of database: 80,573,946
effective HSP length: 105
effective length of database: 57,541,041
effective search space used: 4488201198
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)