>gb|AY103974.1| Zea mays PCO123560 mRNA sequence
          Length = 1889

 Score =  109 bits (55), Expect = 7e-21
 Identities = 79/87 (90%)
 Strand = Plus / Plus

                                                                        
Query: 12   gtggttgatctggcgcacctggtggcggccaagtggccgggcgccgggaccggcggcagc 71
            |||||||||||||||||||||||||||||||||||||| ||||| | | | | |||||||
Sbjct: 1463 gtggttgatctggcgcacctggtggcggccaagtggcccggcgcggcggcggccggcagc 1522

                                       
Query: 72   ggcgaccccctggaggactactgcaag 98
            |||||||| |||||||||| |||||||
Sbjct: 1523 ggcgaccctctggaggacttctgcaag 1549

>gb|M95076.1|MZEORFQ Zea mays putative glyceraldehyde-3-phosphate dehydrogenase mRNA,
           partial cds
          Length = 188

 Score =  109 bits (55), Expect = 7e-21
 Identities = 79/87 (90%)
 Strand = Plus / Plus

                                                                       
Query: 12  gtggttgatctggcgcacctggtggcggccaagtggccgggcgccgggaccggcggcagc 71
           |||||||||||||||||||||||||||||||||||||| ||||| | | | | |||||||
Sbjct: 46  gtggttgatctggcgcacctggtggcggccaagtggcccggcgcggcggcggccggcagc 105

                                      
Query: 72  ggcgaccccctggaggactactgcaag 98
           |||||||| |||||||||| |||||||
Sbjct: 106 ggcgaccctctggaggacttctgcaag 132

>ref|XM_493811.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1335

 Score = 56.0 bits (28), Expect = 9e-05
 Identities = 75/88 (85%), Gaps = 2/88 (2%)
 Strand = Plus / Plus

                                                                        
Query: 12   gtggttgatctggcgcacctggtggcggccaagtggccgggcgccg-ggaccggcggcag 70
            ||||| ||||||||||| |||||||||  ||||||||| ||||| | ||  | | |||||
Sbjct: 1207 gtggtcgatctggcgcatctggtggcgagcaagtggcccggcgcggcggtgcag-ggcag 1265

                                        
Query: 71   cggcgaccccctggaggactactgcaag 98
            ||||||||| |||||||||| |||||||
Sbjct: 1266 cggcgacccactggaggacttctgcaag 1293

>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 56.0 bits (28), Expect = 9e-05
 Identities = 75/88 (85%), Gaps = 2/88 (2%)
 Strand = Plus / Plus

                                                                           
Query: 12      gtggttgatctggcgcacctggtggcggccaagtggccgggcgccg-ggaccggcggcag 70
               ||||| ||||||||||| |||||||||  ||||||||| ||||| | ||  | | |||||
Sbjct: 1644769 gtggtcgatctggcgcatctggtggcgagcaagtggcccggcgcggcggtgcag-ggcag 1644827

                                           
Query: 71      cggcgaccccctggaggactactgcaag 98
               ||||||||| |||||||||| |||||||
Sbjct: 1644828 cggcgacccactggaggacttctgcaag 1644855

>gb|AC099739.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OJ1528D07,
             complete sequence
          Length = 87592

 Score = 56.0 bits (28), Expect = 9e-05
 Identities = 75/88 (85%), Gaps = 2/88 (2%)
 Strand = Plus / Plus

                                                                         
Query: 12    gtggttgatctggcgcacctggtggcggccaagtggccgggcgccg-ggaccggcggcag 70
             ||||| ||||||||||| |||||||||  ||||||||| ||||| | ||  | | |||||
Sbjct: 52215 gtggtcgatctggcgcatctggtggcgagcaagtggcccggcgcggcggtgcag-ggcag 52273

                                         
Query: 71    cggcgaccccctggaggactactgcaag 98
             ||||||||| |||||||||| |||||||
Sbjct: 52274 cggcgacccactggaggacttctgcaag 52301

>gb|AC144426.1| Oryza sativa (japonica cultivar-group) chromosome 3 clone OJA1015F07,
              complete sequence
          Length = 127098

 Score = 56.0 bits (28), Expect = 9e-05
 Identities = 75/88 (85%), Gaps = 2/88 (2%)
 Strand = Plus / Plus

                                                                          
Query: 12     gtggttgatctggcgcacctggtggcggccaagtggccgggcgccg-ggaccggcggcag 70
              ||||| ||||||||||| |||||||||  ||||||||| ||||| | ||  | | |||||
Sbjct: 124330 gtggtcgatctggcgcatctggtggcgagcaagtggcccggcgcggcggtgcag-ggcag 124388

                                          
Query: 71     cggcgaccccctggaggactactgcaag 98
              ||||||||| |||||||||| |||||||
Sbjct: 124389 cggcgacccactggaggacttctgcaag 124416

>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
               sequence
          Length = 36192742

 Score = 56.0 bits (28), Expect = 9e-05
 Identities = 75/88 (85%), Gaps = 2/88 (2%)
 Strand = Plus / Plus

                                                                           
Query: 12      gtggttgatctggcgcacctggtggcggccaagtggccgggcgccg-ggaccggcggcag 70
               ||||| ||||||||||| |||||||||  ||||||||| ||||| | ||  | | |||||
Sbjct: 1644767 gtggtcgatctggcgcatctggtggcgagcaagtggcccggcgcggcggtgcag-ggcag 1644825

                                           
Query: 71      cggcgaccccctggaggactactgcaag 98
               ||||||||| |||||||||| |||||||
Sbjct: 1644826 cggcgacccactggaggacttctgcaag 1644853

>dbj|AK067755.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013118G18, full
            insert sequence
          Length = 1668

 Score = 56.0 bits (28), Expect = 9e-05
 Identities = 75/88 (85%), Gaps = 2/88 (2%)
 Strand = Plus / Plus

                                                                        
Query: 12   gtggttgatctggcgcacctggtggcggccaagtggccgggcgccg-ggaccggcggcag 70
            ||||| ||||||||||| |||||||||  ||||||||| ||||| | ||  | | |||||
Sbjct: 1262 gtggtcgatctggcgcatctggtggcgagcaagtggcccggcgcggcggtgcag-ggcag 1320

                                        
Query: 71   cggcgaccccctggaggactactgcaag 98
            ||||||||| |||||||||| |||||||
Sbjct: 1321 cggcgacccactggaggacttctgcaag 1348

>dbj|AK059014.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-021-A08, full
           insert sequence
          Length = 892

 Score = 56.0 bits (28), Expect = 9e-05
 Identities = 75/88 (85%), Gaps = 2/88 (2%)
 Strand = Plus / Plus

                                                                       
Query: 12  gtggttgatctggcgcacctggtggcggccaagtggccgggcgccg-ggaccggcggcag 70
           ||||| ||||||||||| |||||||||  ||||||||| ||||| | ||  | | |||||
Sbjct: 532 gtggtcgatctggcgcatctggtggcgagcaagtggcccggcgcggcggtgcag-ggcag 590

                                       
Query: 71  cggcgaccccctggaggactactgcaag 98
           ||||||||| |||||||||| |||||||
Sbjct: 591 cggcgacccactggaggacttctgcaag 618

>dbj|AP000615.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3,
             clone:P0043E01
          Length = 154128

 Score = 56.0 bits (28), Expect = 9e-05
 Identities = 75/88 (85%), Gaps = 2/88 (2%)
 Strand = Plus / Plus

                                                                         
Query: 12    gtggttgatctggcgcacctggtggcggccaagtggccgggcgccg-ggaccggcggcag 70
             ||||| ||||||||||| |||||||||  ||||||||| ||||| | ||  | | |||||
Sbjct: 57232 gtggtcgatctggcgcatctggtggcgagcaagtggcccggcgcggcggtgcag-ggcag 57290

                                         
Query: 71    cggcgaccccctggaggactactgcaag 98
             ||||||||| |||||||||| |||||||
Sbjct: 57291 cggcgacccactggaggacttctgcaag 57318

>gb|CP000115.1| Nitrobacter winogradskyi Nb-255, complete genome
          Length = 3402093

 Score = 48.1 bits (24), Expect = 0.023
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                          
Query: 54     gccgggaccggcggcagcggcgaccccc 81
              ||||||||||||||| ||||||||||||
Sbjct: 527779 gccgggaccggcggcggcggcgaccccc 527806

>emb|AL646052.1| Ralstonia solanacearum GMI1000 chromosome complete sequence
          Length = 3716413

 Score = 44.1 bits (22), Expect = 0.35
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                         
Query: 45      tggccgggcgccgggaccggcggcag 70
               |||||||||||||| |||||||||||
Sbjct: 3019878 tggccgggcgccggcaccggcggcag 3019903

>emb|AL731636.3|OSJN00281 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0093G06,
             complete sequence
          Length = 127420

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 62    cggcggcagcggcgaccccct 82
             |||||||||||||||||||||
Sbjct: 16338 cggcggcagcggcgaccccct 16318

>gb|AC107365.2| Danio rerio, clone -241I7, complete sequence
          Length = 128411

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 218    ttatcgtctatctatagccta 238
              |||||||||||||||||||||
Sbjct: 106188 ttatcgtctatctatagccta 106168

>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
               sequence
          Length = 35498469

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 62      cggcggcagcggcgaccccct 82
               |||||||||||||||||||||
Sbjct: 8832029 cggcggcagcggcgaccccct 8832009

>emb|AL662961.3|OSJN00164 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0028M15,
              complete sequence
          Length = 187330

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 62     cggcggcagcggcgaccccct 82
              |||||||||||||||||||||
Sbjct: 174568 cggcggcagcggcgaccccct 174548

>ref|XM_463326.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1890

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                        
Query: 62   cggcggcagcggcgaccccctggaggac 89
            ||||||||||||||| ||| ||||||||
Sbjct: 1432 cggcggcagcggcgagcccttggaggac 1405

>ref|XM_479008.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 3330

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                        
Query: 53   cgccgggaccggcggcagcggcgacccc 80
            ||||||| |||||||| |||||||||||
Sbjct: 3294 cgccgggtccggcggcggcggcgacccc 3321

>ref|XM_478204.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 489

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 52  gcgccgggaccggcggcagcggcg 75
           ||||||||||| ||||||||||||
Sbjct: 206 gcgccgggacctgcggcagcggcg 229

>gb|CP000284.1| Methylobacillus flagellatus KT, complete genome
          Length = 2971517

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 11      ggtggttgatctggcgcacc 30
               ||||||||||||||||||||
Sbjct: 1919922 ggtggttgatctggcgcacc 1919941

>gb|AC130725.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0494H05,
             complete sequence
          Length = 141715

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 62    cggcggcagcggcgaccccc 81
             ||||||||||||||||||||
Sbjct: 13670 cggcggcagcggcgaccccc 13689

>emb|AL627248.7| Zebrafish DNA sequence from clone RP71-1G18 in linkage group 2 Contains
              three novel genes, a novel gene similar to human CASQ1
              (calsequestrin 1), six novel genes similar to vertebrate
              C1Q (gliacolin), a novel gene similar to human HNRPC
              (heterogeneous nuclear ribonucleoprotein C (C1/C2)), a
              novel gene for a protein similar to human H326 protein, two
              novel genes for proteins similar to human apolipoproteins,
              a novel gene similar to human TEP1 (telomerase-associated
              protein 1) and a CpG island, complete sequence
          Length = 143586

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 238    ataatatggacctgctggat 257
              ||||||||||||||||||||
Sbjct: 122457 ataatatggacctgctggat 122476

>gb|AC136492.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0554F08,
             complete sequence
          Length = 166218

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 62    cggcggcagcggcgaccccc 81
             ||||||||||||||||||||
Sbjct: 39511 cggcggcagcggcgaccccc 39530

>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                        
Query: 52       gcgccgggaccggcggcagcggcg 75
                ||||||||||| ||||||||||||
Sbjct: 18421205 gcgccgggacctgcggcagcggcg 18421228

>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 58       ggaccggcggcagcggcgac 77
                ||||||||||||||||||||
Sbjct: 25645066 ggaccggcggcagcggcgac 25645085



 Score = 40.1 bits (20), Expect = 5.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                        
Query: 62       cggcggcagcggcgaccccctgga 85
                ||||||| ||||||||||||||||
Sbjct: 24662716 cggcggccgcggcgaccccctgga 24662693

>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 62       cggcggcagcggcgaccccc 81
                ||||||||||||||||||||
Sbjct: 27007088 cggcggcagcggcgaccccc 27007107

>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                            
Query: 62       cggcggcagcggcgaccccctggaggac 89
                ||||||||||||||| ||| ||||||||
Sbjct: 21885034 cggcggcagcggcgagcccttggaggac 21885007

>dbj|AP003334.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
              clone:B1114B07
          Length = 148060

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                          
Query: 62     cggcggcagcggcgaccccctggaggac 89
              ||||||||||||||| ||| ||||||||
Sbjct: 114327 cggcggcagcggcgagcccttggaggac 114300

>dbj|AP003571.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
             clone:P0458E02
          Length = 154458

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 58    ggaccggcggcagcggcgac 77
             ||||||||||||||||||||
Sbjct: 68511 ggaccggcggcagcggcgac 68530

>dbj|AP003539.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
              clone:P0040H10
          Length = 173301

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 62     cggcggcagcggcgaccccctgga 85
              ||||||| ||||||||||||||||
Sbjct: 145909 cggcggccgcggcgaccccctgga 145886

>dbj|AP003864.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OJ1058_B11
          Length = 102824

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 52    gcgccgggaccggcggcagcggcg 75
             ||||||||||| ||||||||||||
Sbjct: 13053 gcgccgggacctgcggcagcggcg 13076

>dbj|AP004266.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
              clone:P0038F10
          Length = 153929

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 52     gcgccgggaccggcggcagcggcg 75
              ||||||||||| ||||||||||||
Sbjct: 150700 gcgccgggacctgcggcagcggcg 150723

>dbj|AK106068.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-206-H02, full
            insert sequence
          Length = 1775

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 58   ggaccggcggcagcggcgac 77
            ||||||||||||||||||||
Sbjct: 1279 ggaccggcggcagcggcgac 1298

>emb|BX470117.7| Zebrafish DNA sequence from clone CH211-204N10 in linkage group 19,
             complete sequence
          Length = 169993

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 197   cgaagcaactacagtacatt 216
             ||||||||||||||||||||
Sbjct: 60684 cgaagcaactacagtacatt 60703

>dbj|AK060486.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-013-E10, full
            insert sequence
          Length = 1815

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 58   ggaccggcggcagcggcgac 77
            ||||||||||||||||||||
Sbjct: 1293 ggaccggcggcagcggcgac 1312

>gb|DQ065771.1| Polyangium cellulosum hypothetical protein gene, complete cds;
             chivosazol biosynthetic gene cluster, complete sequence;
             and hypothetical protein gene, complete cds
          Length = 96547

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 50    gggcgccgggaccggcggca 69
             ||||||||||||||||||||
Sbjct: 89639 gggcgccgggaccggcggca 89658


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,585,229
Number of Sequences: 3902068
Number of extensions: 2585229
Number of successful extensions: 56598
Number of sequences better than 10.0: 36
Number of HSP's better than 10.0 without gapping: 37
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 56209
Number of HSP's gapped (non-prelim): 389
length of query: 413
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 391
effective length of database: 17,147,199,772
effective search space: 6704555110852
effective search space used: 6704555110852
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)