ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name baak4c07
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1SLIT2_RAT (Q9WVC1) Slit homolog 2 protein precursor (Slit-2) (Fr... 30 4.7

>SLIT2_RAT (Q9WVC1) Slit homolog 2 protein precursor (Slit-2) (Fragment)|
          Length = 766

 Score = 30.0 bits (66), Expect = 4.7
 Identities = 13/36 (36%), Positives = 19/36 (52%), Gaps = 2/36 (5%)
 Frame = -3

Query: 189 ISGLSWRXXXXXXXXTARVLNRVPPHV--AQSTCSG 88
           +SG+ W+           +LN+V PH   AQ +CSG
Sbjct: 1   MSGIGWQTLSLSLALVLSILNKVAPHACPAQCSCSG 36


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 73,670,932
Number of Sequences: 219361
Number of extensions: 1348528
Number of successful extensions: 3157
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 2753
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3069
length of database: 80,573,946
effective HSP length: 106
effective length of database: 57,321,680
effective search space used: 4643056080
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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