ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name baak4c07
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AF474373.1| Hordeum vulgare subsp. vulgare BAC 259I16, comple... 60 8e-06
2gb|DQ175857.1| Hordeum vulgare clone DsC28 Ds insertion site fla... 60 8e-06
3gb|DQ175832.1| Hordeum vulgare clone DsB30 Ds insertion site fla... 60 8e-06
4gb|DQ175829.1| Hordeum vulgare clone DsB25 Ds insertion site fla... 60 8e-06
5emb|Y10813.1|HVPRPB H.vulgare mRNA for pathogenic related protei... 54 5e-04
6gb|AF474071.1| Hordeum vulgare subsp. vulgare cultivar Morex BAC... 52 0.002
7ref|NM_191305.1| Oryza sativa (japonica cultivar-group), predic... 46 0.12
8dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 46 0.12
9dbj|AP003409.4| Oryza sativa (japonica cultivar-group) genomic D... 46 0.12
10dbj|AK071083.1| Oryza sativa (japonica cultivar-group) cDNA clon... 46 0.12
11dbj|AB028133.1| Oryza sativa mRNA for Dof zinc finger protein, c... 46 0.12
12emb|AL929096.5| Zebrafish DNA sequence from clone DKEY-216E9 in ... 42 1.9
13gb|AC118646.23| Mus musculus chromosome 15, clone RP24-116A18, c... 40 7.6
14gb|AE017142.1| Yersinia pestis biovar Medievalis str. 91001 sect... 40 7.6
15gb|CP000067.1| Trypanosoma brucei chromosome 4, complete sequence 40 7.6
16gb|AC091702.3| Trypanosoma brucei chromosome 4 clone RPCI93-2L9,... 40 7.6
17gb|CP000010.1| Burkholderia mallei ATCC 23344 chromosome 1, comp... 40 7.6
18gb|CP000124.1| Burkholderia pseudomallei 1710b chromosome I, com... 40 7.6
19gb|AE009952.1| Yersinia pestis KIM, complete genome 40 7.6
20ref|XM_820908.1| Trypanosoma brucei TREU927 clone RPCI93-2L9 hyp... 40 7.6
21emb|AL451140.15| Human DNA sequence from clone RP11-540H22 on ch... 40 7.6
22emb|AL022326.1|HS333H23 Human DNA sequence from clone RP3-333H23... 40 7.6
23ref|XM_781566.1| PREDICTED: Strongylocentrotus purpuratus simila... 40 7.6
24emb|X60007.1|NSGRP2MR N.sylvestris mRNA for glycine rich protein... 40 7.6
25emb|BX936398.1| Yersinia pseudotuberculosis IP32953 genome, comp... 40 7.6
26emb|BX571965.1| Burkholderia pseudomallei strain K96243, chromos... 40 7.6
27emb|AJ414160.1| Yersinia pestis strain CO92 complete genome; seg... 40 7.6
28gb|AC010049.7| Drosophila melanogaster 3L BAC RPCI98-3O18 (Roswe... 40 7.6
29gb|AC093845.3| Homo sapiens BAC clone RP11-454M3 from 4, complet... 40 7.6
30gb|AC108173.1| Homo sapiens chromosome 5 clone RP11-526L22, comp... 40 7.6
31gb|AC099553.1| Drosophila melanogaster 3L BAC RP98-25G5 (Roswell... 40 7.6
32emb|BX322620.13| Zebrafish DNA sequence from clone DKEY-49L3 in ... 40 7.6
33emb|BX323555.10| Zebrafish DNA sequence from clone DKEY-163M14 i... 40 7.6
34emb|BX247872.12| Zebrafish DNA sequence from clone CH211-223M9, ... 40 7.6
35gb|AC010234.5|AC010234 Homo sapiens chromosome 5 clone CTC-337B1... 40 7.6
36dbj|BA000035.2| Corynebacterium efficiens YS-314 DNA, complete g... 40 7.6
37dbj|BA000012.4| Mesorhizobium loti MAFF303099 DNA, complete genome 40 7.6
38gb|AC157023.6| Mus musculus 6 BAC RP24-386D10 (Roswell Park Canc... 40 7.6
39emb|AL935049.19| Zebrafish DNA sequence from clone CH211-185K2 i... 40 7.6
40emb|AL928716.15| Zebrafish DNA sequence from clone DKEY-23K6 in ... 40 7.6
41gb|AC153827.5| Mus musculus 6 BAC RP23-58O24 (Roswell Park Cance... 40 7.6
42gb|AE003594.3| Drosophila melanogaster chromosome 3L, section 75... 40 7.6
43dbj|AB106877.1| Xenopus laevis ap-2rep mRNA for AP-2 repressor, ... 40 7.6 
>gb|AF474373.1| Hordeum vulgare subsp. vulgare BAC 259I16, complete sequence
          Length = 124050

 Score = 60.0 bits (30), Expect = 8e-06
 Identities = 39/42 (92%)
 Strand = Plus / Minus

                                                       
Query: 300   tatacctgaataattacagttgaaaagaactagtctagtttt 341
             ||||||| |||||||| ||||||||| |||||||||||||||
Sbjct: 20323 tatacctaaataattatagttgaaaaaaactagtctagtttt 20282
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>gb|DQ175857.1| Hordeum vulgare clone DsC28 Ds insertion site flanking region
           genomic sequence
          Length = 838

 Score = 60.0 bits (30), Expect = 8e-06
 Identities = 39/42 (92%)
 Strand = Plus / Plus

                                                     
Query: 300 tatacctgaataattacagttgaaaagaactagtctagtttt 341
           ||||||| |||||||| ||||||||| |||||||||||||||
Sbjct: 441 tatacctaaataattatagttgaaaaaaactagtctagtttt 482
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>gb|DQ175832.1| Hordeum vulgare clone DsB30 Ds insertion site flanking region
           genomic sequence
          Length = 806

 Score = 60.0 bits (30), Expect = 8e-06
 Identities = 39/42 (92%)
 Strand = Plus / Plus

                                                     
Query: 300 tatacctgaataattacagttgaaaagaactagtctagtttt 341
           ||||||| |||||||| ||||||||| |||||||||||||||
Sbjct: 542 tatacctaaataattatagttgaaaaaaactagtctagtttt 583
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>gb|DQ175829.1| Hordeum vulgare clone DsB25 Ds insertion site flanking region
           genomic sequence
          Length = 892

 Score = 60.0 bits (30), Expect = 8e-06
 Identities = 39/42 (92%)
 Strand = Plus / Minus

                                                     
Query: 300 tatacctgaataattacagttgaaaagaactagtctagtttt 341
           ||||||| |||||||| ||||||||| |||||||||||||||
Sbjct: 283 tatacctaaataattatagttgaaaaaaactagtctagtttt 242
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>emb|Y10813.1|HVPRPB H.vulgare mRNA for pathogenic related protein in response to
          Blumeria
          Length = 546

 Score = 54.0 bits (27), Expect = 5e-04
 Identities = 36/39 (92%)
 Strand = Plus / Plus

                                                 
Query: 24 cttggccgcgtacctgtgcgtgatcctggcctcgctcgc 62
          ||||||| ||| |||||||||||| ||||||||||||||
Sbjct: 44 cttggccacgttcctgtgcgtgatgctggcctcgctcgc 82
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>gb|AF474071.1| Hordeum vulgare subsp. vulgare cultivar Morex BAC clone 745c13,
             complete sequence
          Length = 102842

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 32/34 (94%)
 Strand = Plus / Plus

                                               
Query: 308   aataattacagttgaaaagaactagtctagtttt 341
             |||||||  |||||||||||||||||||||||||
Sbjct: 37912 aataattgtagttgaaaagaactagtctagtttt 37945



 Score = 42.1 bits (21), Expect = 1.9
 Identities = 42/49 (85%)
 Strand = Plus / Minus

                                                              
Query: 291   tactccctctatacctgaataattacagttgaaaagaactagtctagtt 339
             ||||||||||||| || |||||||  | ||||||| |||||| ||||||
Sbjct: 37979 tactccctctatatctaaataattgtaattgaaaaaaactagactagtt 37931
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>ref|NM_191305.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 618

 Score = 46.1 bits (23), Expect = 0.12
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                  
Query: 136 ccgcgcggtggtggtggttatgg 158
           |||||||||||||||||||||||
Sbjct: 517 ccgcgcggtggtggtggttatgg 495
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 46.1 bits (23), Expect = 0.12
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                       
Query: 136      ccgcgcggtggtggtggttatgg 158
                |||||||||||||||||||||||
Sbjct: 31844233 ccgcgcggtggtggtggttatgg 31844255
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>dbj|AP003409.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
             clone:B1131G08
          Length = 158241

 Score = 46.1 bits (23), Expect = 0.12
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                    
Query: 136   ccgcgcggtggtggtggttatgg 158
             |||||||||||||||||||||||
Sbjct: 30311 ccgcgcggtggtggtggttatgg 30333
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>dbj|AK071083.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023076F14, full
           insert sequence
          Length = 1078

 Score = 46.1 bits (23), Expect = 0.12
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                  
Query: 136 ccgcgcggtggtggtggttatgg 158
           |||||||||||||||||||||||
Sbjct: 644 ccgcgcggtggtggtggttatgg 622
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>dbj|AB028133.1| Oryza sativa mRNA for Dof zinc finger protein, complete cds
          Length = 1174

 Score = 46.1 bits (23), Expect = 0.12
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                  
Query: 136 ccgcgcggtggtggtggttatgg 158
           |||||||||||||||||||||||
Sbjct: 721 ccgcgcggtggtggtggttatgg 699
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>emb|AL929096.5| Zebrafish DNA sequence from clone DKEY-216E9 in linkage group 17,
             complete sequence
          Length = 192592

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 305   ctgaataattacagttgaaaa 325
             |||||||||||||||||||||
Sbjct: 25248 ctgaataattacagttgaaaa 25268
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>gb|AC118646.23| Mus musculus chromosome 15, clone RP24-116A18, complete sequence
          Length = 205272

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 73     cagggcgcgctcgcagccag 92
              ||||||||||||||||||||
Sbjct: 144075 cagggcgcgctcgcagccag 144056
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>gb|AE017142.1| Yersinia pestis biovar Medievalis str. 91001 section 16 of 16 of the
              complete genome
          Length = 229338

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 1      aacaatatggctctcctcaagaac 24
              |||||||| |||||||||||||||
Sbjct: 144898 aacaatatagctctcctcaagaac 144921
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>gb|CP000067.1| Trypanosoma brucei chromosome 4, complete sequence
          Length = 1590432

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 337    gttttcctcaactcgcctcttcct 360
              ||||||||||||||||||| ||||
Sbjct: 412954 gttttcctcaactcgcctcctcct 412977
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>gb|AC091702.3| Trypanosoma brucei chromosome 4 clone RPCI93-2L9, complete sequence
          Length = 161383

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 337    gttttcctcaactcgcctcttcct 360
              ||||||||||||||||||| ||||
Sbjct: 114270 gttttcctcaactcgcctcctcct 114293
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>gb|CP000010.1| Burkholderia mallei ATCC 23344 chromosome 1, complete sequence
          Length = 3510148

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 66      cgtggcgcagggcgcgctcg 85
               ||||||||||||||||||||
Sbjct: 1411580 cgtggcgcagggcgcgctcg 1411561
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>gb|CP000124.1| Burkholderia pseudomallei 1710b chromosome I, complete sequence
          Length = 4126292

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 66      cgtggcgcagggcgcgctcg 85
               ||||||||||||||||||||
Sbjct: 2637697 cgtggcgcagggcgcgctcg 2637678
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>gb|AE009952.1| Yersinia pestis KIM, complete genome
          Length = 4600755

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 1       aacaatatggctctcctcaagaac 24
               |||||||| |||||||||||||||
Sbjct: 4516328 aacaatatagctctcctcaagaac 4516351
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>ref|XM_820908.1| Trypanosoma brucei TREU927 clone RPCI93-2L9 hypothetical protein
           (Tb927.4.1610) partial mRNA
          Length = 1080

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 337 gttttcctcaactcgcctcttcct 360
           ||||||||||||||||||| ||||
Sbjct: 221 gttttcctcaactcgcctcctcct 198
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>emb|AL451140.15| Human DNA sequence from clone RP11-540H22 on chromosome 9 Contains the 5'
              end of a novel gene and the 3' end of a novel gene,
              complete sequence
          Length = 187738

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 91     agagcaggtgctttgagcaa 110
              ||||||||||||||||||||
Sbjct: 125390 agagcaggtgctttgagcaa 125371
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>emb|AL022326.1|HS333H23 Human DNA sequence from clone RP3-333H23 on chromosome 22q12.1-12.3
             Contains the (possibly alternatively spliced) RPL3 gene
             for 60S Ribosomal Protein L3 and the threefold
             alternatively spliced gene for Synaptogyrin 1A, 1B and 1C
             (SYNGR1A, SYBGRIB, SYNGR1C), both genes downstream of a
             putative CpG island. Contains ESTs, an STS, GSSs,  and a
             ca repeat (D22S1155) polymorphism, complete sequence
          Length = 122888

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 73    cagggcgcgctcgcagccag 92
             ||||||||||||||||||||
Sbjct: 82831 cagggcgcgctcgcagccag 82812
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>ref|XM_781566.1| PREDICTED: Strongylocentrotus purpuratus similar to ubiquitin
           associated protein 2 isoform 1 (LOC581577), mRNA
          Length = 724

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 438 cacggttacggccccgcccg 457
           ||||||||||||||||||||
Sbjct: 569 cacggttacggccccgcccg 550
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>emb|X60007.1|NSGRP2MR N.sylvestris mRNA for glycine rich protein 2 (GRP2)
          Length = 991

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 139 cgcggtggtggtggttatgg 158
           ||||||||||||||||||||
Sbjct: 306 cgcggtggtggtggttatgg 325
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>emb|BX936398.1| Yersinia pseudotuberculosis IP32953 genome, complete sequence
          Length = 4744671

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 1       aacaatatggctctcctcaagaac 24
               |||||||| |||||||||||||||
Sbjct: 4697301 aacaatatagctctcctcaagaac 4697278
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>emb|BX571965.1| Burkholderia pseudomallei strain K96243, chromosome 1, complete sequence
          Length = 4074542

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 66      cgtggcgcagggcgcgctcg 85
               ||||||||||||||||||||
Sbjct: 1745781 cgtggcgcagggcgcgctcg 1745800
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>emb|AJ414160.1| Yersinia pestis strain CO92 complete genome; segment 20/20
          Length = 203728

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 1      aacaatatggctctcctcaagaac 24
              |||||||| |||||||||||||||
Sbjct: 119541 aacaatatagctctcctcaagaac 119564
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>gb|AC010049.7| Drosophila melanogaster 3L BAC RPCI98-3O18 (Roswell Park Cancer
             Institute Drosophila BAC library) complete sequence
          Length = 168058

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 150   tggttatgggaatgggtatc 169
             ||||||||||||||||||||
Sbjct: 29077 tggttatgggaatgggtatc 29058
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>gb|AC093845.3| Homo sapiens BAC clone RP11-454M3 from 4, complete sequence
          Length = 97736

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 306   tgaataattacagttgaaaa 325
             ||||||||||||||||||||
Sbjct: 49417 tgaataattacagttgaaaa 49436
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>gb|AC108173.1| Homo sapiens chromosome 5 clone RP11-526L22, complete sequence
          Length = 174346

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 331    agtctagttttcctcaactc 350
              ||||||||||||||||||||
Sbjct: 158990 agtctagttttcctcaactc 158971
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>gb|AC099553.1| Drosophila melanogaster 3L BAC RP98-25G5 (Roswell Park Cancer Institute
             Drosophila BAC Library) complete sequence
          Length = 177608

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 150   tggttatgggaatgggtatc 169
             ||||||||||||||||||||
Sbjct: 97983 tggttatgggaatgggtatc 97964
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>emb|BX322620.13| Zebrafish DNA sequence from clone DKEY-49L3 in linkage group 13, complete
              sequence
          Length = 192504

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 263    tatagtaaaacacagtgatg 282
              ||||||||||||||||||||
Sbjct: 133802 tatagtaaaacacagtgatg 133821
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>emb|BX323555.10| Zebrafish DNA sequence from clone DKEY-163M14 in linkage group 21,
              complete sequence
          Length = 180416

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 90     cagagcaggtgctttgagca 109
              ||||||||||||||||||||
Sbjct: 151042 cagagcaggtgctttgagca 151023
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>emb|BX247872.12| Zebrafish DNA sequence from clone CH211-223M9, complete sequence
          Length = 199873

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 263   tatagtaaaacacagtgatg 282
             ||||||||||||||||||||
Sbjct: 53269 tatagtaaaacacagtgatg 53250
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>gb|AC010234.5|AC010234 Homo sapiens chromosome 5 clone CTC-337B15, complete sequence
          Length = 143553

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 331   agtctagttttcctcaactc 350
             ||||||||||||||||||||
Sbjct: 32861 agtctagttttcctcaactc 32842
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>dbj|BA000035.2| Corynebacterium efficiens YS-314 DNA, complete genome
          Length = 3147090

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 446     cggccccgcccggtgtgggt 465
               ||||||||||||||||||||
Sbjct: 3020087 cggccccgcccggtgtgggt 3020068
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>dbj|BA000012.4| Mesorhizobium loti MAFF303099 DNA, complete genome
          Length = 7036071

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 44      tgatcctggcctcgctcgccttcg 67
               ||||||||||| ||||||||||||
Sbjct: 2807590 tgatcctggccgcgctcgccttcg 2807613
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>gb|AC157023.6| Mus musculus 6 BAC RP24-386D10 (Roswell Park Cancer Institute (C57BL/6J
             Male) Mouse BAC Library) complete sequence
          Length = 170298

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 312   attacagttgaaaagaacta 331
             ||||||||||||||||||||
Sbjct: 59259 attacagttgaaaagaacta 59278
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>emb|AL935049.19| Zebrafish DNA sequence from clone CH211-185K2 in linkage group 20,
            complete sequence
          Length = 148715

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 90   cagagcaggtgctttgagca 109
            ||||||||||||||||||||
Sbjct: 7605 cagagcaggtgctttgagca 7624
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>emb|AL928716.15| Zebrafish DNA sequence from clone DKEY-23K6 in linkage group 20, complete
              sequence
          Length = 246647

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 90     cagagcaggtgctttgagca 109
              ||||||||||||||||||||
Sbjct: 198797 cagagcaggtgctttgagca 198816
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>gb|AC153827.5| Mus musculus 6 BAC RP23-58O24 (Roswell Park Cancer Institute (C57BL/6J
              Female) Mouse BAC Library) complete sequence
          Length = 234403

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 312    attacagttgaaaagaacta 331
              ||||||||||||||||||||
Sbjct: 192395 attacagttgaaaagaacta 192414
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>gb|AE003594.3| Drosophila melanogaster chromosome 3L, section 75 of 83 of the complete
              sequence
          Length = 314904

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 150    tggttatgggaatgggtatc 169
              ||||||||||||||||||||
Sbjct: 125679 tggttatgggaatgggtatc 125660
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>dbj|AB106877.1| Xenopus laevis ap-2rep mRNA for AP-2 repressor, complete cds
          Length = 2282

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 347 actcgcctcttcctcgtgtc 366
           ||||||||||||||||||||
Sbjct: 846 actcgcctcttcctcgtgtc 827


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,198,335
Number of Sequences: 3902068
Number of extensions: 4198335
Number of successful extensions: 80223
Number of sequences better than 10.0: 43
Number of HSP's better than 10.0 without gapping: 43
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 79927
Number of HSP's gapped (non-prelim): 296
length of query: 563
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 540
effective length of database: 17,143,297,704
effective search space: 9257380760160
effective search space used: 9257380760160
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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