>VA43_VARV (P33855) Protein A43|
          Length = 195

 Score = 28.1 bits (61), Expect = 5.8
 Identities = 16/36 (44%), Positives = 24/36 (66%), Gaps = 2/36 (5%)
 Frame = +3

Query: 36  YMMERSKRDKLIADYNSMDIW--DFNEKYGELWDFT 137
           Y + RSK   +I  Y+S+ IW  D N+KY +++DFT
Sbjct: 138 YSLHRSKCITIIG-YDSI-IWYKDINDKYNDIYDFT 171

>YCF4_LOTJA (Q9BBR9) Photosystem I assembly protein ycf4|
          Length = 200

 Score = 27.7 bits (60), Expect = 7.6
 Identities = 18/50 (36%), Positives = 25/50 (50%), Gaps = 13/50 (26%)
 Frame = -3

Query: 310 FLQGCFI*RSFFWSYVI----PGFLRV---------YLSYMSSELTSNCI 200
           F+ GC   R FFW+++      GFL V         +LS++SSE  S  I
Sbjct: 18  FVTGCRNPRDFFWAFITLLGSVGFLLVAASSYLHKNFLSFISSEFDSELI 67

>YPH2_THIVI (P45367) Hypothetical 41.3 kDa protein in phbC-phbA intergenic|
           region (ORF2)
          Length = 364

 Score = 27.7 bits (60), Expect = 7.6
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = +2

Query: 116 RRALGLHRQQR*PHPTIGAIQKWW 187
           R+A+GL  QQ    P  GA+  WW
Sbjct: 27  RKAMGLENQQTLTTPWEGALDHWW 50

>R51A1_HUMAN (Q96B01) RAD51-associated protein 1 (RAD51-interacting protein)|
          Length = 352

 Score = 27.3 bits (59), Expect = 9.9
 Identities = 10/32 (31%), Positives = 23/32 (71%)
 Frame = +3

Query: 219 SDDMYDKYTLRKPGMT*LQKKDLQIKQPCKKK 314
           S+D  + +++RK  +  ++KK++++K P +KK
Sbjct: 215 SEDNDEDFSMRKSKVKEIKKKEVKVKSPVEKK 246

>GLNA_CRYNE (Q96UG9) Glutamine synthetase (EC 6.3.1.2) (Glutamate--ammonia|
           ligase) (GS)
          Length = 358

 Score = 27.3 bits (59), Expect = 9.9
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = -1

Query: 312 FFYKVALFEDPFFGAMSSLVSLEC 241
           F   VA+F+DPF G  + LV  EC
Sbjct: 76  FLRPVAIFKDPFRGGANILVLCEC 99

>AKAP6_HUMAN (Q13023) A-kinase anchor protein 6 (Protein kinase A-anchoring|
            protein 6) (PRKA6) (A-kinase anchor protein 100 kDa)
            (AKAP 100) (mAKAP)
          Length = 2319

 Score = 27.3 bits (59), Expect = 9.9
 Identities = 14/42 (33%), Positives = 23/42 (54%), Gaps = 6/42 (14%)
 Frame = +3

Query: 51   SKRDKLIADYN------SMDIWDFNEKYGELWDFTVNRDDLI 158
            SKR +  AD +      S  + DF+ +Y ELWD  ++ + L+
Sbjct: 941  SKRKEEFADMSKVHSVGSNGLLDFDSEYQELWDCLIDMESLV 982

>UVRC_MESFL (Q6F216) UvrABC system protein C (Protein uvrC) (Excinuclease ABC|
           subunit C)
          Length = 588

 Score = 27.3 bits (59), Expect = 9.9
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = +3

Query: 60  DKLIADYNSMDIWDFNEKYGELWDFTVNRDDLI 158
           DK+I D N ++++D NEKY  +    +  D+ I
Sbjct: 301 DKIIVD-NEVELFDLNEKYKSISTHPIKEDEKI 332

>AKAP6_RAT (Q9WVC7) A-kinase anchor protein 6 (Protein kinase A-anchoring|
            protein 6) (PRKA6) (mAKAP)
          Length = 2314

 Score = 27.3 bits (59), Expect = 9.9
 Identities = 20/77 (25%), Positives = 36/77 (46%)
 Frame = +3

Query: 84   SMDIWDFNEKYGELWDFTVNRDDLIQP*VPFRSGGHIG*MQLEVSSDDMYDKYTLRKPGM 263
            S  + DF+ +Y ELWD+ ++ + L+          H   M  E     +Y +Y++ +  +
Sbjct: 957  SNGLLDFDSEYQELWDWLIDMESLVM-------DSH-DLMMSEEQQQHLYKRYSV-EMSI 1007

Query: 264  T*LQKKDLQIKQPCKKK 314
              L+K +L  K    KK
Sbjct: 1008 RHLKKSELLSKVEALKK 1024

>SSRP1_CHICK (Q04678) Structure-specific recognition protein 1 (SSRP1)|
           (Recombination signal sequence recognition protein)
           (T160) (Fragment)
          Length = 669

 Score = 27.3 bits (59), Expect = 9.9
 Identities = 10/26 (38%), Positives = 18/26 (69%)
 Frame = +3

Query: 51  SKRDKLIADYNSMDIWDFNEKYGELW 128
           + R+K+ +D+  + I D ++K GELW
Sbjct: 521 ANREKIKSDHPGISITDLSKKAGELW 546


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 37,301,871
Number of Sequences: 219361
Number of extensions: 575668
Number of successful extensions: 1208
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1198
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1208
length of database: 80,573,946
effective HSP length: 80
effective length of database: 63,025,066
effective search space used: 1512601584
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)