ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | baak4b23 |
|---|---|
| Clone Library Name | barley_pub |
>ref|NM_190005.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 2136 Score = 170 bits (86), Expect = 2e-39 Identities = 132/145 (91%), Gaps = 2/145 (1%) Strand = Plus / Plus Query: 2 cggacaaaccgcacaactttgagnccggngnatctacatgatggagaggtccaagcgcga 61 ||||||| || |||||||||||| |||| | ||||||||||||||||| || ||||| Sbjct: 1967 cggacaagccacacaactttgag-ccggag-atctacatgatggagagatcggctcgcga 2024 Query: 62 caagctcatcgcggactacaactccatggacatctgggacttcaacgagaagtacggcga 121 |||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct: 2025 caagctcatcgccgactacaacaccatggacatctgggacttcaacgagaagtacggcga 2084 Query: 122 gctctgggacttcaccgtcaacaga 146 ||||||||||||||||||| ||||| Sbjct: 2085 gctctgggacttcaccgtcgacaga 2109
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 170 bits (86), Expect = 2e-39 Identities = 132/145 (91%), Gaps = 2/145 (1%) Strand = Plus / Plus Query: 2 cggacaaaccgcacaactttgagnccggngnatctacatgatggagaggtccaagcgcga 61 ||||||| || |||||||||||| |||| | ||||||||||||||||| || ||||| Sbjct: 40778593 cggacaagccacacaactttgag-ccggag-atctacatgatggagagatcggctcgcga 40778650 Query: 62 caagctcatcgcggactacaactccatggacatctgggacttcaacgagaagtacggcga 121 |||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct: 40778651 caagctcatcgccgactacaacaccatggacatctgggacttcaacgagaagtacggcga 40778710 Query: 122 gctctgggacttcaccgtcaacaga 146 ||||||||||||||||||| ||||| Sbjct: 40778711 gctctgggacttcaccgtcgacaga 40778735
>dbj|AP004330.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:OSJNBa0052O12 Length = 167881 Score = 170 bits (86), Expect = 2e-39 Identities = 132/145 (91%), Gaps = 2/145 (1%) Strand = Plus / Plus Query: 2 cggacaaaccgcacaactttgagnccggngnatctacatgatggagaggtccaagcgcga 61 ||||||| || |||||||||||| |||| | ||||||||||||||||| || ||||| Sbjct: 81239 cggacaagccacacaactttgag-ccggag-atctacatgatggagagatcggctcgcga 81296 Query: 62 caagctcatcgcggactacaactccatggacatctgggacttcaacgagaagtacggcga 121 |||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct: 81297 caagctcatcgccgactacaacaccatggacatctgggacttcaacgagaagtacggcga 81356 Query: 122 gctctgggacttcaccgtcaacaga 146 ||||||||||||||||||| ||||| Sbjct: 81357 gctctgggacttcaccgtcgacaga 81381
>dbj|AK105788.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-202-H02, full insert sequence Length = 967 Score = 170 bits (86), Expect = 2e-39 Identities = 132/145 (91%), Gaps = 2/145 (1%) Strand = Plus / Plus Query: 2 cggacaaaccgcacaactttgagnccggngnatctacatgatggagaggtccaagcgcga 61 ||||||| || |||||||||||| |||| | ||||||||||||||||| || ||||| Sbjct: 478 cggacaagccacacaactttgag-ccggag-atctacatgatggagagatcggctcgcga 535 Query: 62 caagctcatcgcggactacaactccatggacatctgggacttcaacgagaagtacggcga 121 |||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct: 536 caagctcatcgccgactacaacaccatggacatctgggacttcaacgagaagtacggcga 595 Query: 122 gctctgggacttcaccgtcaacaga 146 ||||||||||||||||||| ||||| Sbjct: 596 gctctgggacttcaccgtcgacaga 620
>dbj|AK067717.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013117F22, full insert sequence Length = 1092 Score = 170 bits (86), Expect = 2e-39 Identities = 132/145 (91%), Gaps = 2/145 (1%) Strand = Plus / Plus Query: 2 cggacaaaccgcacaactttgagnccggngnatctacatgatggagaggtccaagcgcga 61 ||||||| || |||||||||||| |||| | ||||||||||||||||| || ||||| Sbjct: 562 cggacaagccacacaactttgag-ccggag-atctacatgatggagagatcggctcgcga 619 Query: 62 caagctcatcgcggactacaactccatggacatctgggacttcaacgagaagtacggcga 121 |||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct: 620 caagctcatcgccgactacaacaccatggacatctgggacttcaacgagaagtacggcga 679 Query: 122 gctctgggacttcaccgtcaacaga 146 ||||||||||||||||||| ||||| Sbjct: 680 gctctgggacttcaccgtcgacaga 704
>dbj|AK059975.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-212-A09, full insert sequence Length = 1077 Score = 170 bits (86), Expect = 2e-39 Identities = 132/145 (91%), Gaps = 2/145 (1%) Strand = Plus / Plus Query: 2 cggacaaaccgcacaactttgagnccggngnatctacatgatggagaggtccaagcgcga 61 ||||||| || |||||||||||| |||| | ||||||||||||||||| || ||||| Sbjct: 569 cggacaagccacacaactttgag-ccggag-atctacatgatggagagatcggctcgcga 626 Query: 62 caagctcatcgcggactacaactccatggacatctgggacttcaacgagaagtacggcga 121 |||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct: 627 caagctcatcgccgactacaacaccatggacatctgggacttcaacgagaagtacggcga 686 Query: 122 gctctgggacttcaccgtcaacaga 146 ||||||||||||||||||| ||||| Sbjct: 687 gctctgggacttcaccgtcgacaga 711
>dbj|AK059880.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-207-H04, full insert sequence Length = 876 Score = 170 bits (86), Expect = 2e-39 Identities = 132/145 (91%), Gaps = 2/145 (1%) Strand = Plus / Plus Query: 2 cggacaaaccgcacaactttgagnccggngnatctacatgatggagaggtccaagcgcga 61 ||||||| || |||||||||||| |||| | ||||||||||||||||| || ||||| Sbjct: 569 cggacaagccacacaactttgag-ccggag-atctacatgatggagagatcggctcgcga 626 Query: 62 caagctcatcgcggactacaactccatggacatctgggacttcaacgagaagtacggcga 121 |||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct: 627 caagctcatcgccgactacaacaccatggacatctgggacttcaacgagaagtacggcga 686 Query: 122 gctctgggacttcaccgtcaacaga 146 ||||||||||||||||||| ||||| Sbjct: 687 gctctgggacttcaccgtcgacaga 711
>dbj|AK060605.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-025-B09, full insert sequence Length = 255 Score = 155 bits (78), Expect = 1e-34 Identities = 87/90 (96%) Strand = Plus / Plus Query: 57 cgcgacaagctcatcgcggactacaactccatggacatctgggacttcaacgagaagtac 116 ||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||| Sbjct: 1 cgcgacaagctcatcgccgactacaacaccatggacatctgggacttcaacgagaagtac 60 Query: 117 ggcgagctctgggacttcaccgtcaacaga 146 |||||||||||||||||||||||| ||||| Sbjct: 61 ggcgagctctgggacttcaccgtcgacaga 90
>gb|AC104958.6| Homo sapiens chromosome 8, clone RP11-713M15, complete sequence Length = 188326 Score = 42.1 bits (21), Expect = 1.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 242 cactctaaggaaaccagggat 262 ||||||||||||||||||||| Sbjct: 42435 cactctaaggaaaccagggat 42455
>gb|AC106013.2| Homo sapiens chromosome 8, clone RP11-1109L18, complete sequence Length = 166093 Score = 42.1 bits (21), Expect = 1.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 242 cactctaaggaaaccagggat 262 ||||||||||||||||||||| Sbjct: 50041 cactctaaggaaaccagggat 50021
>dbj|AP005716.2| Homo sapiens genomic DNA, chromosome 8q23, clone: KB1445E9, complete sequence Length = 151880 Score = 42.1 bits (21), Expect = 1.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 242 cactctaaggaaaccagggat 262 ||||||||||||||||||||| Sbjct: 11223 cactctaaggaaaccagggat 11203
>dbj|AP004387.2| Homo sapiens genomic DNA, chromosome 8q23, clone: KB1201B11 Length = 156200 Score = 42.1 bits (21), Expect = 1.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 242 cactctaaggaaaccagggat 262 ||||||||||||||||||||| Sbjct: 143098 cactctaaggaaaccagggat 143078
>ref|XM_593034.2| PREDICTED: Bos taurus similar to olfactomedin 4 precursor (LOC515082), partial mRNA Length = 789 Score = 40.1 bits (20), Expect = 4.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 130 acttcaccgtcaacagagatgacc 153 ||||||||| |||||||||||||| Sbjct: 283 acttcaccggcaacagagatgacc 306
>gb|AC144625.3| Mus musculus BAC clone RP24-196P19 from chromosome 5, complete sequence Length = 145348 Score = 40.1 bits (20), Expect = 4.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 38 catgatggagaggtccaagc 57 |||||||||||||||||||| Sbjct: 20187 catgatggagaggtccaagc 20168
>gb|AC125043.4| Mus musculus BAC clone RP23-342M4 from chromosome 5, complete sequence Length = 199287 Score = 40.1 bits (20), Expect = 4.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 38 catgatggagaggtccaagc 57 |||||||||||||||||||| Sbjct: 189325 catgatggagaggtccaagc 189306
>emb|AL163281.2|HS21C081 Homo sapiens chromosome 21 segment HS21C081 Length = 340000 Score = 40.1 bits (20), Expect = 4.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 152 cctcatccaaccataggtgccatt 175 ||||||||||||| |||||||||| Sbjct: 233552 cctcatccaaccagaggtgccatt 233529
>gb|AF064862.2| Homo sapiens chromosome 21 clone PAC 31P10 map 21q22.3, complete sequence Length = 145861 Score = 40.1 bits (20), Expect = 4.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 152 cctcatccaaccataggtgccatt 175 ||||||||||||| |||||||||| Sbjct: 79390 cctcatccaaccagaggtgccatt 79367
>gb|AC091759.2| Sus scrofa clone RP44-484M10, complete sequence Length = 168703 Score = 40.1 bits (20), Expect = 4.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 195 ggctagatgcagttggaggtcagt 218 ||||||| |||||||||||||||| Sbjct: 74302 ggctagaagcagttggaggtcagt 74325
>emb|AL954230.2|RP43035C13 Pan troglodytes chromosome 22 BAC RP43-035C13, complete sequence Length = 157305 Score = 40.1 bits (20), Expect = 4.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 152 cctcatccaaccataggtgccatt 175 ||||||||||||| |||||||||| Sbjct: 5939 cctcatccaaccagaggtgccatt 5916
>emb|BX248124.7| Zebrafish DNA sequence from clone CH211-214E3 in linkage group 12, complete sequence Length = 211571 Score = 40.1 bits (20), Expect = 4.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 141 aacagagatgacctcatcca 160 |||||||||||||||||||| Sbjct: 195663 aacagagatgacctcatcca 195682 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,064,327 Number of Sequences: 3902068 Number of extensions: 2064327 Number of successful extensions: 35725 Number of sequences better than 10.0: 20 Number of HSP's better than 10.0 without gapping: 20 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 35678 Number of HSP's gapped (non-prelim): 33 length of query: 315 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 293 effective length of database: 17,147,199,772 effective search space: 5024129533196 effective search space used: 5024129533196 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
