ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name baak4b20
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1emb|X60158.1|HVPSAG H.vulgare PsaG mRNA 454 e-125
2gb|AY110144.1| Zea mays CL7431_1 mRNA sequence 283 1e-73
3dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 252 4e-64
4dbj|AP005633.3| Oryza sativa (japonica cultivar-group) genomic D... 252 4e-64
5dbj|AP005392.3| Oryza sativa (japonica cultivar-group) genomic D... 252 4e-64
6dbj|AK098847.1| Oryza sativa (japonica cultivar-group) cDNA clon... 252 4e-64
7dbj|AK061695.1| Oryza sativa (japonica cultivar-group) cDNA clon... 252 4e-64
8emb|AJ417528.1|OSA417528 Oryza sativa partial mRNA for putative ... 220 2e-54
9ref|NM_104443.2| Arabidopsis thaliana unknown protein AT1G55670 ... 52 8e-04
10gb|AY724779.1| Camellia sinensis chloroplast photosystem I react... 52 8e-04
11gb|AF339692.1| Arabidopsis thaliana putative photosystem I subun... 52 8e-04
12gb|AF326870.1| Arabidopsis thaliana putative photosystem I subun... 52 8e-04
13gb|AY050463.1| Arabidopsis thaliana At1g55670/F20N2_3 mRNA, comp... 52 8e-04
14gb|AF324710.2|AF324710 Arabidopsis thaliana At1g55670 (At1g55670... 52 8e-04
15gb|AF378859.1|AF378859 Arabidopsis thaliana At1g55670/F20N2_3 mR... 52 8e-04
16gb|AC002328.2|AC002328 Genomic sequence for Arabidopsis thaliana... 52 8e-04
17emb|AJ245630.1|ATH245630 Arabidopsis thaliana mRNA for photosyst... 52 8e-04
18gb|DQ226794.1| Boechera divaricarpa isolate SLW-B-C03 mRNA sequence 50 0.003
19dbj|AP004898.1| Lotus japonicus genomic DNA, chromosome 3, clone... 50 0.003
20ref|XM_449258.1| Candida glabrata CBS138, CAGL0L11264g partial mRNA 44 0.20
21emb|CR380958.1| Candida glabrata strain CBS138 chromosome L comp... 44 0.20
22gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome 44 0.20
23gb|CP000248.1| Novosphingobium aromaticivorans DSM 12444, comple... 42 0.80
24gb|AE010300.1| Leptospira interrogans serovar lai str. 56601 chr... 42 0.80
25gb|AC126471.4| Homo sapiens 12 BAC RP11-629O19 (Roswell Park Can... 42 0.80
26gb|AE016823.1| Leptospira interrogans serovar Copenhageni str. F... 42 0.80
27gb|AC123528.2| Oryza sativa chromosome 11 clone OSJNBa0078E03, ... 40 3.2
28gb|CP000152.1| Burkholderia sp. 383 chromosome 2, complete sequence 40 3.2
29ref|XM_322829.1| Neurospora crassa OR74A hypothetical protein (N... 40 3.2
30ref|XM_950918.1| Neurospora crassa OR74A hypothetical protein (N... 40 3.2
31ref|XM_751003.1| Aspergillus fumigatus Af293 hypothetical protei... 40 3.2
32gb|CP000271.1| Burkholderia xenovorans LB400 chromosome 2, compl... 40 3.2
33emb|BX284746.1|NCB23I4 Neurospora crassa DNA linkage group II BA... 40 3.2
34dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 40 3.2
35gb|U76874.2|VEU76874 Vesicular exanthema of swine virus stain A4... 40 3.2
36dbj|BA000012.4| Mesorhizobium loti MAFF303099 DNA, complete genome 40 3.2
37emb|AJ131384.1|VEX131384 Vesicular exanthema of swine virus A48 ... 40 3.2
38gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 40 3.2 
>emb|X60158.1|HVPSAG H.vulgare PsaG mRNA
          Length = 724

 Score =  454 bits (229), Expect = e-125
 Identities = 242/245 (98%), Gaps = 1/245 (0%)
 Strand = Plus / Plus

                                                                       
Query: 2   gggccgcgctggnagccgtcggtggtgatcagcctcagcacggggctgtcgctcgtgatg 61
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 259 gggccgcgctgg-agccgtcggtggtgatcagcctcagcacggggctgtcgctcgtgatg 317

                                                                       
Query: 62  ggccgcttcgtcttcttcaacttccagcgggagaacgtggcgaagcaggtccccgagcag 121
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 318 ggccgcttcgtcttcttcaacttccagcgggagaacgtggcgaagcaggtccccgagcag 377

                                                                       
Query: 122 aacggcaagacccacttcgaggccggcgacgagcgcgccaaggagttcgccgggatcctc 181
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 378 aacggcaagacccacttcgaggccggcgacgagcgcgccaaggagttcgccgggatcctc 437

                                                                       
Query: 182 aagtccaacgaccccgtcggcttcaacctcgtcgacgtcctcgcatggggttccatcggc 241
           ||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||
Sbjct: 438 aagtccaacgaccccgtcggcttcaacctcgtcgacgtcctagcatggggctccatcggc 497

                
Query: 242 cacat 246
           |||||
Sbjct: 498 cacat 502
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>gb|AY110144.1| Zea mays CL7431_1 mRNA sequence
          Length = 1515

 Score =  283 bits (143), Expect = 1e-73
 Identities = 203/223 (91%)
 Strand = Plus / Minus

                                                                       
Query: 24  tggtgatcagcctcagcacggggctgtcgctcgtgatgggccgcttcgtcttcttcaact 83
           ||||||||||||| ||||||||  |||||||| |  ||||||||||||||||||||||||
Sbjct: 431 tggtgatcagcctgagcacgggcgtgtcgctcttcctgggccgcttcgtcttcttcaact 372

                                                                       
Query: 84  tccagcgggagaacgtggcgaagcaggtccccgagcagaacggcaagacccacttcgagg 143
           |||||||||||||||||||||||||||| |||| ||||||||||||||| |||||||| |
Sbjct: 371 tccagcgggagaacgtggcgaagcaggtgcccgcgcagaacggcaagacgcacttcgacg 312

                                                                       
Query: 144 ccggcgacgagcgcgccaaggagttcgccgggatcctcaagtccaacgaccccgtcggct 203
           |||||||||||||||||||||||||||| |   | |||||||||||||||||||| ||||
Sbjct: 311 ccggcgacgagcgcgccaaggagttcgcggccctgctcaagtccaacgaccccgtgggct 252

                                                      
Query: 204 tcaacctcgtcgacgtcctcgcatggggttccatcggccacat 246
           |||||||||||||||||||||| ||||| ||  ||||||||||
Sbjct: 251 tcaacctcgtcgacgtcctcgcctggggctcgctcggccacat 209
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>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
                sequence
          Length = 22696651

 Score =  252 bits (127), Expect = 4e-64
 Identities = 166/179 (92%)
 Strand = Plus / Plus

                                                                            
Query: 68       ttcgtcttcttcaacttccagcgggagaacgtggcgaagcaggtccccgagcagaacggc 127
                ||||| |||||||||||||||||||||||||||||||||||||| || ||||||||||||
Sbjct: 18415335 ttcgtgttcttcaacttccagcgggagaacgtggcgaagcaggtgccggagcagaacggc 18415394

                                                                            
Query: 128      aagacccacttcgaggccggcgacgagcgcgccaaggagttcgccgggatcctcaagtcc 187
                ||||| |||||||| ||||||||||||||||||||||||||||||||  | |||  ||||
Sbjct: 18415395 aagacgcacttcgacgccggcgacgagcgcgccaaggagttcgccggcctgctccggtcc 18415454

                                                                           
Query: 188      aacgaccccgtcggcttcaacctcgtcgacgtcctcgcatggggttccatcggccacat 246
                |||||||||||||||||||||||||||||||||||||| ||||| ||| ||||||||||
Sbjct: 18415455 aacgaccccgtcggcttcaacctcgtcgacgtcctcgcctggggctccctcggccacat 18415513
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>dbj|AP005633.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC
              clone:P0463G11
          Length = 154188

 Score =  252 bits (127), Expect = 4e-64
 Identities = 166/179 (92%)
 Strand = Plus / Plus

                                                                          
Query: 68     ttcgtcttcttcaacttccagcgggagaacgtggcgaagcaggtccccgagcagaacggc 127
              ||||| |||||||||||||||||||||||||||||||||||||| || ||||||||||||
Sbjct: 130071 ttcgtgttcttcaacttccagcgggagaacgtggcgaagcaggtgccggagcagaacggc 130130

                                                                          
Query: 128    aagacccacttcgaggccggcgacgagcgcgccaaggagttcgccgggatcctcaagtcc 187
              ||||| |||||||| ||||||||||||||||||||||||||||||||  | |||  ||||
Sbjct: 130131 aagacgcacttcgacgccggcgacgagcgcgccaaggagttcgccggcctgctccggtcc 130190

                                                                         
Query: 188    aacgaccccgtcggcttcaacctcgtcgacgtcctcgcatggggttccatcggccacat 246
              |||||||||||||||||||||||||||||||||||||| ||||| ||| ||||||||||
Sbjct: 130191 aacgaccccgtcggcttcaacctcgtcgacgtcctcgcctggggctccctcggccacat 130249
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>dbj|AP005392.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC
             clone:P0463D04
          Length = 145828

 Score =  252 bits (127), Expect = 4e-64
 Identities = 166/179 (92%)
 Strand = Plus / Plus

                                                                         
Query: 68    ttcgtcttcttcaacttccagcgggagaacgtggcgaagcaggtccccgagcagaacggc 127
             ||||| |||||||||||||||||||||||||||||||||||||| || ||||||||||||
Sbjct: 77209 ttcgtgttcttcaacttccagcgggagaacgtggcgaagcaggtgccggagcagaacggc 77268

                                                                         
Query: 128   aagacccacttcgaggccggcgacgagcgcgccaaggagttcgccgggatcctcaagtcc 187
             ||||| |||||||| ||||||||||||||||||||||||||||||||  | |||  ||||
Sbjct: 77269 aagacgcacttcgacgccggcgacgagcgcgccaaggagttcgccggcctgctccggtcc 77328

                                                                        
Query: 188   aacgaccccgtcggcttcaacctcgtcgacgtcctcgcatggggttccatcggccacat 246
             |||||||||||||||||||||||||||||||||||||| ||||| ||| ||||||||||
Sbjct: 77329 aacgaccccgtcggcttcaacctcgtcgacgtcctcgcctggggctccctcggccacat 77387
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>dbj|AK098847.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013000C21, full
           insert sequence
          Length = 671

 Score =  252 bits (127), Expect = 4e-64
 Identities = 166/179 (92%)
 Strand = Plus / Plus

                                                                       
Query: 68  ttcgtcttcttcaacttccagcgggagaacgtggcgaagcaggtccccgagcagaacggc 127
           ||||| |||||||||||||||||||||||||||||||||||||| || ||||||||||||
Sbjct: 260 ttcgtgttcttcaacttccagcgggagaacgtggcgaagcaggtgccggagcagaacggc 319

                                                                       
Query: 128 aagacccacttcgaggccggcgacgagcgcgccaaggagttcgccgggatcctcaagtcc 187
           ||||| |||||||| ||||||||||||||||||||||||||||||||  | |||  ||||
Sbjct: 320 aagacgcacttcgacgccggcgacgagcgcgccaaggagttcgccggcctgctccggtcc 379

                                                                      
Query: 188 aacgaccccgtcggcttcaacctcgtcgacgtcctcgcatggggttccatcggccacat 246
           |||||||||||||||||||||||||||||||||||||| ||||| ||| ||||||||||
Sbjct: 380 aacgaccccgtcggcttcaacctcgtcgacgtcctcgcctggggctccctcggccacat 438
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>dbj|AK061695.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-037-C08, full
           insert sequence
          Length = 636

 Score =  252 bits (127), Expect = 4e-64
 Identities = 166/179 (92%)
 Strand = Plus / Plus

                                                                       
Query: 68  ttcgtcttcttcaacttccagcgggagaacgtggcgaagcaggtccccgagcagaacggc 127
           ||||| |||||||||||||||||||||||||||||||||||||| || ||||||||||||
Sbjct: 256 ttcgtgttcttcaacttccagcgggagaacgtggcgaagcaggtgccggagcagaacggc 315

                                                                       
Query: 128 aagacccacttcgaggccggcgacgagcgcgccaaggagttcgccgggatcctcaagtcc 187
           ||||| |||||||| ||||||||||||||||||||||||||||||||  | |||  ||||
Sbjct: 316 aagacgcacttcgacgccggcgacgagcgcgccaaggagttcgccggcctgctccggtcc 375

                                                                      
Query: 188 aacgaccccgtcggcttcaacctcgtcgacgtcctcgcatggggttccatcggccacat 246
           |||||||||||||||||||||||||||||||||||||| ||||| ||| ||||||||||
Sbjct: 376 aacgaccccgtcggcttcaacctcgtcgacgtcctcgcctggggctccctcggccacat 434
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>emb|AJ417528.1|OSA417528 Oryza sativa partial mRNA for putative photosystem I chain V
           precursor (xd17 gene)
          Length = 578

 Score =  220 bits (111), Expect = 2e-54
 Identities = 147/159 (92%)
 Strand = Plus / Plus

                                                                       
Query: 88  gcgggagaacgtggcgaagcaggtccccgagcagaacggcaagacccacttcgaggccgg 147
           |||||||||||||||||||||||| || ||||||||||||||||| |||||||| |||||
Sbjct: 10  gcgggagaacgtggcgaagcaggtgccggagcagaacggcaagacgcacttcgacgccgg 69

                                                                       
Query: 148 cgacgagcgcgccaaggagttcgccgggatcctcaagtccaacgaccccgtcggcttcaa 207
           |||||||||||||||||||||||||||  | |||  ||||||||||||||||||||||||
Sbjct: 70  cgacgagcgcgccaaggagttcgccggcctgctccggtccaacgaccccgtcggcttcaa 129

                                                  
Query: 208 cctcgtcgacgtcctcgcatggggttccatcggccacat 246
           |||||||||||||||||| ||||| ||| ||||||||||
Sbjct: 130 cctcgtcgacgtcctcgcctggggctccctcggccacat 168
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>ref|NM_104443.2| Arabidopsis thaliana unknown protein AT1G55670 mRNA, complete cds
          Length = 780

 Score = 52.0 bits (26), Expect = 8e-04
 Identities = 35/38 (92%)
 Strand = Plus / Plus

                                                 
Query: 62  ggccgcttcgtcttcttcaacttccagcgggagaacgt 99
           ||||| ||||||||||||||||||||| | ||||||||
Sbjct: 328 ggccgtttcgtcttcttcaacttccagagagagaacgt 365
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>gb|AY724779.1| Camellia sinensis chloroplast photosystem I reaction center V mRNA,
           partial cds; nuclear gene for chloroplast product
          Length = 612

 Score = 52.0 bits (26), Expect = 8e-04
 Identities = 59/70 (84%)
 Strand = Plus / Plus

                                                                       
Query: 177 tcctcaagtccaacgaccccgtcggcttcaacctcgtcgacgtcctcgcatggggttcca 236
           ||||||| ||||||||||| || || |||||| ||||||| ||| | || ||||||||||
Sbjct: 308 tcctcaaatccaacgacccagttgggttcaacatcgtcgatgtcttggcttggggttcca 367

                     
Query: 237 tcggccacat 246
           | || |||||
Sbjct: 368 ttggacacat 377
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>gb|AF339692.1| Arabidopsis thaliana putative photosystem I subunit V precursor
           (At1g55670) mRNA, complete cds
          Length = 533

 Score = 52.0 bits (26), Expect = 8e-04
 Identities = 35/38 (92%)
 Strand = Plus / Plus

                                                 
Query: 62  ggccgcttcgtcttcttcaacttccagcgggagaacgt 99
           ||||| ||||||||||||||||||||| | ||||||||
Sbjct: 235 ggccgtttcgtcttcttcaacttccagagagagaacgt 272
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>gb|AF326870.1| Arabidopsis thaliana putative photosystem I subunit V precursor
           (At1g55670) mRNA, complete cds
          Length = 786

 Score = 52.0 bits (26), Expect = 8e-04
 Identities = 35/38 (92%)
 Strand = Plus / Plus

                                                 
Query: 62  ggccgcttcgtcttcttcaacttccagcgggagaacgt 99
           ||||| ||||||||||||||||||||| | ||||||||
Sbjct: 328 ggccgtttcgtcttcttcaacttccagagagagaacgt 365
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>gb|AY050463.1| Arabidopsis thaliana At1g55670/F20N2_3 mRNA, complete cds
          Length = 483

 Score = 52.0 bits (26), Expect = 8e-04
 Identities = 35/38 (92%)
 Strand = Plus / Plus

                                                 
Query: 62  ggccgcttcgtcttcttcaacttccagcgggagaacgt 99
           ||||| ||||||||||||||||||||| | ||||||||
Sbjct: 235 ggccgtttcgtcttcttcaacttccagagagagaacgt 272
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>gb|AF324710.2|AF324710 Arabidopsis thaliana At1g55670 (At1g55670/F20N2_3) mRNA, complete
           cds
          Length = 750

 Score = 52.0 bits (26), Expect = 8e-04
 Identities = 35/38 (92%)
 Strand = Plus / Plus

                                                 
Query: 62  ggccgcttcgtcttcttcaacttccagcgggagaacgt 99
           ||||| ||||||||||||||||||||| | ||||||||
Sbjct: 328 ggccgtttcgtcttcttcaacttccagagagagaacgt 365
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>gb|AF378859.1|AF378859 Arabidopsis thaliana At1g55670/F20N2_3 mRNA, complete cds
          Length = 737

 Score = 52.0 bits (26), Expect = 8e-04
 Identities = 35/38 (92%)
 Strand = Plus / Plus

                                                 
Query: 62  ggccgcttcgtcttcttcaacttccagcgggagaacgt 99
           ||||| ||||||||||||||||||||| | ||||||||
Sbjct: 330 ggccgtttcgtcttcttcaacttccagagagagaacgt 367
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>gb|AC002328.2|AC002328 Genomic sequence for Arabidopsis thaliana BAC F20N2 from chromosome I,
             complete sequence
          Length = 109171

 Score = 52.0 bits (26), Expect = 8e-04
 Identities = 35/38 (92%)
 Strand = Plus / Minus

                                                   
Query: 62    ggccgcttcgtcttcttcaacttccagcgggagaacgt 99
             ||||| ||||||||||||||||||||| | ||||||||
Sbjct: 41261 ggccgtttcgtcttcttcaacttccagagagagaacgt 41224
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>emb|AJ245630.1|ATH245630 Arabidopsis thaliana mRNA for photosystem I subunit V precursor
           (psaG gene)
          Length = 654

 Score = 52.0 bits (26), Expect = 8e-04
 Identities = 35/38 (92%)
 Strand = Plus / Plus

                                                 
Query: 62  ggccgcttcgtcttcttcaacttccagcgggagaacgt 99
           ||||| ||||||||||||||||||||| | ||||||||
Sbjct: 306 ggccgtttcgtcttcttcaacttccagagagagaacgt 343
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>gb|DQ226794.1| Boechera divaricarpa isolate SLW-B-C03 mRNA sequence
          Length = 560

 Score = 50.1 bits (25), Expect = 0.003
 Identities = 69/83 (83%), Gaps = 3/83 (3%)
 Strand = Plus / Plus

                                                                       
Query: 62  ggccgcttcgtcttcttcaacttccagcgggagaacgtggcgaagcagg---tccccgag 118
           ||||| ||||| ||||||||||||||| | |||||||| || || ||||   | || |||
Sbjct: 161 ggccgtttcgttttcttcaacttccagagagagaacgttgcaaaacagggcttaccggag 220

                                  
Query: 119 cagaacggcaagacccacttcga 141
           |||||||| || |||||||||||
Sbjct: 221 cagaacgggaaaacccacttcga 243
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>dbj|AP004898.1| Lotus japonicus genomic DNA, chromosome 3, clone:LjT01P23, TM0047b,
             complete sequence
          Length = 69411

 Score = 50.1 bits (25), Expect = 0.003
 Identities = 28/29 (96%)
 Strand = Plus / Minus

                                          
Query: 74    ttcttcaacttccagcgggagaacgtggc 102
             ||||||||||||||| |||||||||||||
Sbjct: 40902 ttcttcaacttccagagggagaacgtggc 40874
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>ref|XM_449258.1| Candida glabrata CBS138, CAGL0L11264g partial mRNA
          Length = 3054

 Score = 44.1 bits (22), Expect = 0.20
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 66   gcttcgtcttcttcaacttcca 87
            ||||||||||||||||||||||
Sbjct: 1226 gcttcgtcttcttcaacttcca 1205
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>emb|CR380958.1| Candida glabrata strain CBS138 chromosome L complete sequence
          Length = 1440588

 Score = 44.1 bits (22), Expect = 0.20
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                     
Query: 66      gcttcgtcttcttcaacttcca 87
               ||||||||||||||||||||||
Sbjct: 1199938 gcttcgtcttcttcaacttcca 1199959
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>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome
          Length = 5013479

 Score = 44.1 bits (22), Expect = 0.20
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 97    cgtggcgaagcaggtccccgag 118
             ||||||||||||||||||||||
Sbjct: 19801 cgtggcgaagcaggtccccgag 19822
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>gb|CP000248.1| Novosphingobium aromaticivorans DSM 12444, complete genome
          Length = 3561584

 Score = 42.1 bits (21), Expect = 0.80
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 195    ccgtcggcttcaacctcgtcg 215
              |||||||||||||||||||||
Sbjct: 463433 ccgtcggcttcaacctcgtcg 463413
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>gb|AE010300.1| Leptospira interrogans serovar lai str. 56601 chromosome I, complete
               sequence
          Length = 4332241

 Score = 42.1 bits (21), Expect = 0.80
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 68      ttcgtcttcttcaacttccag 88
               |||||||||||||||||||||
Sbjct: 4318570 ttcgtcttcttcaacttccag 4318550
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>gb|AC126471.4| Homo sapiens 12 BAC RP11-629O19 (Roswell Park Cancer Institute Human
             BAC Library) complete sequence
          Length = 199945

 Score = 42.1 bits (21), Expect = 0.80
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 67    cttcgtcttcttcaacttcca 87
             |||||||||||||||||||||
Sbjct: 20668 cttcgtcttcttcaacttcca 20648
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>gb|AE016823.1| Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130, chromosome
               I, complete sequence
          Length = 4277185

 Score = 42.1 bits (21), Expect = 0.80
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 68      ttcgtcttcttcaacttccag 88
               |||||||||||||||||||||
Sbjct: 4263363 ttcgtcttcttcaacttccag 4263343
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>gb|AC123528.2| Oryza sativa chromosome 11 clone  OSJNBa0078E03, complete sequence
          Length = 149493

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 145    cggcgacgagcgcgccaagg 164
              ||||||||||||||||||||
Sbjct: 137917 cggcgacgagcgcgccaagg 137936
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>gb|CP000152.1| Burkholderia sp. 383 chromosome 2, complete sequence
          Length = 3587082

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 139     cgaggccggcgacgagcgcg 158
               ||||||||||||||||||||
Sbjct: 2181917 cgaggccggcgacgagcgcg 2181898
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>ref|XM_322829.1| Neurospora crassa OR74A hypothetical protein (NCU03572.1) partial
            mRNA
          Length = 1938

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 186  ccaacgaccccgtcggcttc 205
            ||||||||||||||||||||
Sbjct: 1475 ccaacgaccccgtcggcttc 1494
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>ref|XM_950918.1| Neurospora crassa OR74A hypothetical protein (NCU03572.1) partial
            mRNA
          Length = 1938

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 186  ccaacgaccccgtcggcttc 205
            ||||||||||||||||||||
Sbjct: 1475 ccaacgaccccgtcggcttc 1494
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>ref|XM_751003.1| Aspergillus fumigatus Af293 hypothetical protein (Afu2g17610) partial
            mRNA
          Length = 2667

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 111  tccccgagcagaacggcaag 130
            ||||||||||||||||||||
Sbjct: 2339 tccccgagcagaacggcaag 2358
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>gb|CP000271.1| Burkholderia xenovorans LB400 chromosome 2, complete sequence
          Length = 3363523

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 143     gccggcgacgagcgcgccaa 162
               ||||||||||||||||||||
Sbjct: 1483221 gccggcgacgagcgcgccaa 1483240
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>emb|BX284746.1|NCB23I4 Neurospora crassa DNA linkage group II BAC contig B23I4
          Length = 71047

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 186   ccaacgaccccgtcggcttc 205
             ||||||||||||||||||||
Sbjct: 46041 ccaacgaccccgtcggcttc 46022
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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
               sequence
          Length = 28386948

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 145     cggcgacgagcgcgccaagg 164
               ||||||||||||||||||||
Sbjct: 1773746 cggcgacgagcgcgccaagg 1773765
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>gb|U76874.2|VEU76874 Vesicular exanthema of swine virus stain A48, complete genome
          Length = 8284

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 221  ctcgcatggggttccatcgg 240
            ||||||||||||||||||||
Sbjct: 5967 ctcgcatggggttccatcgg 5948
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>dbj|BA000012.4| Mesorhizobium loti MAFF303099 DNA, complete genome
          Length = 7036071

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 145     cggcgacgagcgcgccaagg 164
               ||||||||||||||||||||
Sbjct: 5696626 cggcgacgagcgcgccaagg 5696645
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>emb|AJ131384.1|VEX131384 Vesicular exanthema of swine virus A48 capsid coding region A,
           partial
          Length = 712

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 221 ctcgcatggggttccatcgg 240
           ||||||||||||||||||||
Sbjct: 286 ctcgcatggggttccatcgg 267
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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 145     cggcgacgagcgcgccaagg 164
               ||||||||||||||||||||
Sbjct: 1771467 cggcgacgagcgcgccaagg 1771486


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,232,487
Number of Sequences: 3902068
Number of extensions: 1232487
Number of successful extensions: 31511
Number of sequences better than 10.0: 38
Number of HSP's better than 10.0 without gapping: 38
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 31035
Number of HSP's gapped (non-prelim): 474
length of query: 246
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 224
effective length of database: 17,147,199,772
effective search space: 3840972748928
effective search space used: 3840972748928
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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