Clone Name | baak4b17 |
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Clone Library Name | barley_pub |
>gb|AY596553.1| Saccharum officinarum clone SCUTLR1058C02, complete sequence Length = 1732 Score = 377 bits (190), Expect = e-101 Identities = 466/558 (83%) Strand = Plus / Plus Query: 6 atgtgagccctattgagtacggtcatgtgcttctcattccgcgtgtccttgaccgcctgc 65 |||||||||| ||||| || || ||||||||||||||||| ||||| || |||||||||| Sbjct: 680 atgtgagcccaattgaatatggacatgtgcttctcattcctcgtgttctggaccgcctgc 739 Query: 66 ctcagcaaattgatcctgaaagcttcctgcttgcactacacatggcagctgaggctgcaa 125 ||||| | |||||||| || || ||| |||||||||| || |||||||||||||| || | Sbjct: 740 ctcagaagattgatccagagagtttcttgcttgcactgcaaatggcagctgaggcagcta 799 Query: 126 gcccatactttaggcttggttacaacagcttgggtgcctttgccaccatcaatcatctcc 185 |||||||||| |||||||||||||| ||||||||||||||||||||||||||||| |||| Sbjct: 800 gcccatacttcaggcttggttacaatagcttgggtgcctttgccaccatcaatcacctcc 859 Query: 186 acttccaggcatactacctgtcagtaccttttcctgttgagaaggcgcctaccaagaaga 245 |||| |||||||||||| ||||||| ||||| |||||||| ||||| ||||| | |||| Sbjct: 860 actttcaggcatactacttgtcagtgcctttccctgttgaaaaggcagctacccacaaga 919 Query: 246 tcccccttgccaagtgtgcgctgaatagtggagtgaaggtgtcaaaactgacaaatttcc 305 |||| ||| | || | |||| | |||||||| ||||| || |||| ||||| | Sbjct: 920 tccctctttctgaggacacaatgaagaatggagtgaccgtgtccaagctgataaattatc 979 Query: 306 ccgtgagaggtctagtgtttgagagagggaacacactgaaggatttggctgatgtggtta 365 | |||||||| || || |||||| |||||||||||||| | || |||| |||||||| Sbjct: 980 ctgtgagaggcctggtatttgagggagggaacacactggacgacctggcaaatgtggttt 1039 Query: 366 ccaacgcttgcatttggctccaggagaacaatgttcctttcaacgtcctcatctctgatt 425 |||| |||||||||||||| || || |||||||| |||| ||| || ||||| ||||| | Sbjct: 1040 ccaatgcttgcatttggctgcaagacaacaatgtgccttacaatgtgctcatttctgact 1099 Query: 426 ctggtagaaggatcttcgtttttcctcagtgctatgctgagaaacaggctcttggtgaag 485 ||| | ||| ||||| | || || ||||| ||||| ||||| |||||||| ||||||| Sbjct: 1100 gtggcaagagggtcttcctgttcccccagtgttatgcagagaagcaggctctgggtgaag 1159 Query: 486 tgagccaggatctgctggacacgcaggtgaaccctgcagtatgggagatcagtggacaca 545 |||||||||| ||||||||||| ||||||||||| || || |||||||||||||| |||| Sbjct: 1160 tgagccaggagctgctggacactcaggtgaacccagctgtgtgggagatcagtggccaca 1219 Query: 546 ttgttctgaaacggagga 563 | || ||||| ||||||| Sbjct: 1220 tcgtgctgaagcggagga 1237
>dbj|AK071188.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023086M14, full insert sequence Length = 2088 Score = 305 bits (154), Expect = 8e-80 Identities = 457/558 (81%) Strand = Plus / Plus Query: 6 atgtgagccctattgagtacggtcatgtgcttctcattccgcgtgtccttgaccgcctgc 65 |||| ||||| ||||| || || ||||| ||||||||||| ||||| || |||||||||| Sbjct: 977 atgtaagcccaattgaatatggccatgttcttctcattccccgtgtactggaccgcctgc 1036 Query: 66 ctcagcaaattgatcctgaaagcttcctgcttgcactacacatggcagctgaggctgcaa 125 ||||| ||||| | || |||||| |||||||||| |||||||| ||||| || |||| Sbjct: 1037 ctcagaggattgaccaggagagcttcttgcttgcactgcacatggctgctgaagccgcaa 1096 Query: 126 gcccatactttaggcttggttacaacagcttgggtgcctttgccaccatcaatcatctcc 185 |||||||||| |||||||| || || || |||||||||||||| |||||||| || |||| Sbjct: 1097 gcccatacttcaggcttggctataatagtttgggtgcctttgcaaccatcaaccacctcc 1156 Query: 186 acttccaggcatactacctgtcagtaccttttcctgttgagaaggcgcctaccaagaaga 245 |||| |||||||||||| || |||| ||||| |||||||||||||| ||||||||| || Sbjct: 1157 actttcaggcatactacttgacagtgcctttccctgttgagaaggcagctaccaagagga 1216 Query: 246 tcccccttgccaagtgtgcgctgaatagtggagtgaaggtgtcaaaactgacaaatttcc 305 | |||||| || | | ||||||||||||| |||||||| || |||| || | || Sbjct: 1217 ttttccttgctgagggcacaatgaatagtggagtaaaggtgtccaagctgatgaactacc 1276 Query: 306 ccgtgagaggtctagtgtttgagagagggaacacactgaaggatttggctgatgtggtta 365 | ||||| || || || |||||| |||| ||| |||||| ||| |||| |||||||| Sbjct: 1277 ctgtgaggggactggtttttgagggaggcaactcactgagcgatctggccaatgtggttt 1336 Query: 366 ccaacgcttgcatttggctccaggagaacaatgttcctttcaacgtcctcatctctgatt 425 ||| |||||| || ||||| ||||| |||||||| |||| ||| || || |||||||| | Sbjct: 1337 ccagcgcttgtatctggctgcaggacaacaatgtgccttacaatgttcttatctctgact 1396 Query: 426 ctggtagaaggatcttcgtttttcctcagtgctatgctgagaaacaggctcttggtgaag 485 || | || ||||||| | || |||||||||||||| ||||| |||||||| || |||| Sbjct: 1397 gcggcaaaaagatcttcctcttccctcagtgctatgccgagaagcaggctctgggagaag 1456 Query: 486 tgagccaggatctgctggacacgcaggtgaaccctgcagtatgggagatcagtggacaca 545 |||||||||| || |||||||||||||| ||||| || || |||||||||||||| |||| Sbjct: 1457 tgagccaggagctactggacacgcaggttaacccagctgtgtgggagatcagtggccaca 1516 Query: 546 ttgttctgaaacggagga 563 | || |||||||| |||| Sbjct: 1517 tcgtgctgaaacgaagga 1534
>dbj|AK059556.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-029-G08, full insert sequence Length = 1295 Score = 297 bits (150), Expect = 2e-77 Identities = 456/558 (81%) Strand = Plus / Plus Query: 6 atgtgagccctattgagtacggtcatgtgcttctcattccgcgtgtccttgaccgcctgc 65 |||| ||||| ||||| || || ||||| ||||||||||| ||||| || |||||||||| Sbjct: 219 atgtaagcccaattgaatatggccatgttcttctcattccccgtgtactggaccgcctgc 278 Query: 66 ctcagcaaattgatcctgaaagcttcctgcttgcactacacatggcagctgaggctgcaa 125 ||||| ||||| | || |||||| |||||||||| |||||||| ||||| || |||| Sbjct: 279 ctcagaggattgaccaggagagcttcttgcttgcactgcacatggctgctgaagccgcaa 338 Query: 126 gcccatactttaggcttggttacaacagcttgggtgcctttgccaccatcaatcatctcc 185 |||||||||| |||||||| || || || |||||||||||||| |||||||| || |||| Sbjct: 339 gcccatacttcaggcttggctataatagtttgggtgcctttgcaaccatcaaccacctcc 398 Query: 186 acttccaggcatactacctgtcagtaccttttcctgttgagaaggcgcctaccaagaaga 245 |||| |||||||||||| || |||| ||||| |||||||||||||| ||||||||| || Sbjct: 399 actttcaggcatactacttgacagtgcctttccctgttgagaaggcagctaccaagagga 458 Query: 246 tcccccttgccaagtgtgcgctgaatagtggagtgaaggtgtcaaaactgacaaatttcc 305 | |||||| || | | ||||||||||||| |||||||| || |||| || | || Sbjct: 459 ttttccttgctgagggcacaatgaatagtggagtaaaggtgtccaagctgatgaactacc 518 Query: 306 ccgtgagaggtctagtgtttgagagagggaacacactgaaggatttggctgatgtggtta 365 | ||||| || || || |||||| |||| ||| |||||| ||| |||| |||||||| Sbjct: 519 ctgtgaggggactggtttttgagggaggcaactcactgagcgatctggccaatgtggttt 578 Query: 366 ccaacgcttgcatttggctccaggagaacaatgttcctttcaacgtcctcatctctgatt 425 ||| |||||| || ||||| ||||| |||||||| |||| ||| || || |||||||| | Sbjct: 579 ccagcgcttgtatctggctgcaggacaacaatgtgccttacaatgttcttatctctgact 638 Query: 426 ctggtagaaggatcttcgtttttcctcagtgctatgctgagaaacaggctcttggtgaag 485 || | || ||||||| | || |||||||||||||| ||||| |||||||| || |||| Sbjct: 639 gcggcaaaaagatcttcctcttccctcagtgctatgccgagaagcaggctctgggagaag 698 Query: 486 tgagccaggatctgctggacacgcaggtgaaccctgcagtatgggagatcagtggacaca 545 || ||||||| || |||||||||||||| ||||| || || |||||||||||||| |||| Sbjct: 699 tgggccaggagctactggacacgcaggttaacccagctgtgtgggagatcagtggccaca 758 Query: 546 ttgttctgaaacggagga 563 | || |||||||| |||| Sbjct: 759 tcgtgctgaaacgaagga 776
>gb|AY105327.1| Zea mays PCO147247 mRNA sequence Length = 1954 Score = 214 bits (108), Expect = 2e-52 Identities = 210/244 (86%) Strand = Plus / Plus Query: 6 atgtgagccctattgagtacggtcatgtgcttctcattccgcgtgtccttgaccgcctgc 65 |||| ||||| ||||| || || ||||||||||||||||| ||||| || |||||||||| Sbjct: 938 atgtaagcccaattgaatatggacatgtgcttctcattcctcgtgttctggaccgcctgc 997 Query: 66 ctcagcaaattgatcctgaaagcttcctgcttgcactacacatggcagctgaggctgcaa 125 ||||| |||||||| || |||||| |||||||||| || |||||||| |||| | | Sbjct: 998 ctcagaggattgatccagagagcttcttgcttgcactgcaaatggcagccgagggaggta 1057 Query: 126 gcccatactttaggcttggttacaacagcttgggtgcctttgccaccatcaatcatctcc 185 |||||||||| |||||||||||||| ||||||||||| ||||||||||||||||| |||| Sbjct: 1058 gcccatacttcaggcttggttacaatagcttgggtgcgtttgccaccatcaatcacctcc 1117 Query: 186 acttccaggcatactacctgtcagtaccttttcctgttgagaaggcgcctaccaagaaga 245 |||| ||||| |||||| ||||||| ||||| |||||||||||||| ||||| | |||| Sbjct: 1118 actttcaggcgtactacttgtcagtgcctttccctgttgagaaggcagctacccacaaga 1177 Query: 246 tccc 249 |||| Sbjct: 1178 tccc 1181 Score = 155 bits (78), Expect = 2e-34 Identities = 216/262 (82%) Strand = Plus / Plus Query: 308 gtgagaggtctagtgtttgagagagggaacacactgaaggatttggctgatgtggttacc 367 |||||||| || || |||||| |||||||||| ||| | || |||| ||||||| | Sbjct: 1240 gtgagaggcctggtatttgagggagggaacaccctggacgacctggccactgtggtttct 1299 Query: 368 aacgcttgcatttggctccaggagaacaatgttcctttcaacgtcctcatctctgattct 427 || |||||||||||||| || || |||||||| |||| ||| || ||||| ||||| | | Sbjct: 1300 aatgcttgcatttggctgcaagacaacaatgtgccttacaatgtgctcatttctgactgt 1359 Query: 428 ggtagaaggatcttcgtttttcctcagtgctatgctgagaaacaggctcttggtgaagtg 487 || | ||| | ||| | || || |||||||| || ||||| |||||||| ||||||||| Sbjct: 1360 ggcaagagggttttcctgttcccccagtgctacgcagagaagcaggctctgggtgaagtg 1419 Query: 488 agccaggatctgctggacacgcaggtgaaccctgcagtatgggagatcagtggacacatt 547 |||||||| ||||||||||| ||||||||||| || || |||||||||||||||||||| Sbjct: 1420 agccaggagctgctggacactcaggtgaacccagctgtgtgggagatcagtggacacatg 1479 Query: 548 gttctgaaacggaggacggact 569 || ||||||||||||| ||||| Sbjct: 1480 gtgctgaaacggaggatggact 1501
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 135 bits (68), Expect = 2e-28 Identities = 155/184 (84%) Strand = Plus / Minus Query: 11 agccctattgagtacggtcatgtgcttctcattccgcgtgtccttgaccgcctgcctcag 70 ||||| ||||| || || ||||| ||||||||||| ||||| || ||||||||||||||| Sbjct: 4533852 agcccaattgaatatggccatgttcttctcattccccgtgtactggaccgcctgcctcag 4533793 Query: 71 caaattgatcctgaaagcttcctgcttgcactacacatggcagctgaggctgcaagccca 130 ||||| | || |||||| |||||||||| |||||||| ||||| || ||||||||| Sbjct: 4533792 aggattgaccaggagagcttcttgcttgcactgcacatggctgctgaagccgcaagccca 4533733 Query: 131 tactttaggcttggttacaacagcttgggtgcctttgccaccatcaatcatctccacttc 190 ||||| |||||||| || || || |||||||||||||| |||||||| || |||||||| Sbjct: 4533732 tacttcaggcttggctataatagtttgggtgcctttgcaaccatcaaccacctccacttt 4533673 Query: 191 cagg 194 |||| Sbjct: 4533672 cagg 4533669 Score = 111 bits (56), Expect = 3e-21 Identities = 98/112 (87%) Strand = Plus / Minus Query: 452 cagtgctatgctgagaaacaggctcttggtgaagtgagccaggatctgctggacacgcag 511 ||||||||||| ||||| |||||||| || |||||||||||||| || |||||||||||| Sbjct: 4532727 cagtgctatgccgagaagcaggctctgggagaagtgagccaggagctactggacacgcag 4532668 Query: 512 gtgaaccctgcagtatgggagatcagtggacacattgttctgaaacggagga 563 || ||||| || || |||||||||||||| ||||| || |||||||| |||| Sbjct: 4532667 gttaacccagctgtgtgggagatcagtggccacatcgtgctgaaacgaagga 4532616 Score = 81.8 bits (41), Expect = 2e-12 Identities = 185/233 (79%) Strand = Plus / Minus Query: 191 caggcatactacctgtcagtaccttttcctgttgagaaggcgcctaccaagaagatcccc 250 |||||||||||| || |||| ||||| |||||||||||||| ||||||||| ||| | Sbjct: 4533238 caggcatactacttgacagtgcctttccctgttgagaaggcagctaccaagaggattttc 4533179 Query: 251 cttgccaagtgtgcgctgaatagtggagtgaaggtgtcaaaactgacaaatttccccgtg 310 ||||| || | | ||||||||||||| |||||||| || |||| || | ||| ||| Sbjct: 4533178 cttgctgagggcacaatgaatagtggagtaaaggtgtccaagctgatgaactaccctgtg 4533119 Query: 311 agaggtctagtgtttgagagagggaacacactgaaggatttggctgatgtggttaccaac 370 || || || || |||||| |||| ||| |||||| ||| |||| |||||||| ||| | Sbjct: 4533118 aggggactggtttttgagggaggcaactcactgagcgatctggccaatgtggtttccagc 4533059 Query: 371 gcttgcatttggctccaggagaacaatgttcctttcaacgtcctcatctctga 423 ||||| || ||||| ||||| |||||||| |||| ||| || || |||||||| Sbjct: 4533058 gcttgtatctggctgcaggacaacaatgtgccttacaatgttcttatctctga 4533006
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 135 bits (68), Expect = 2e-28 Identities = 155/184 (84%) Strand = Plus / Minus Query: 11 agccctattgagtacggtcatgtgcttctcattccgcgtgtccttgaccgcctgcctcag 70 ||||| ||||| || || ||||| ||||||||||| ||||| || ||||||||||||||| Sbjct: 4533833 agcccaattgaatatggccatgttcttctcattccccgtgtactggaccgcctgcctcag 4533774 Query: 71 caaattgatcctgaaagcttcctgcttgcactacacatggcagctgaggctgcaagccca 130 ||||| | || |||||| |||||||||| |||||||| ||||| || ||||||||| Sbjct: 4533773 aggattgaccaggagagcttcttgcttgcactgcacatggctgctgaagccgcaagccca 4533714 Query: 131 tactttaggcttggttacaacagcttgggtgcctttgccaccatcaatcatctccacttc 190 ||||| |||||||| || || || |||||||||||||| |||||||| || |||||||| Sbjct: 4533713 tacttcaggcttggctataatagtttgggtgcctttgcaaccatcaaccacctccacttt 4533654 Query: 191 cagg 194 |||| Sbjct: 4533653 cagg 4533650 Score = 111 bits (56), Expect = 3e-21 Identities = 98/112 (87%) Strand = Plus / Minus Query: 452 cagtgctatgctgagaaacaggctcttggtgaagtgagccaggatctgctggacacgcag 511 ||||||||||| ||||| |||||||| || |||||||||||||| || |||||||||||| Sbjct: 4532708 cagtgctatgccgagaagcaggctctgggagaagtgagccaggagctactggacacgcag 4532649 Query: 512 gtgaaccctgcagtatgggagatcagtggacacattgttctgaaacggagga 563 || ||||| || || |||||||||||||| ||||| || |||||||| |||| Sbjct: 4532648 gttaacccagctgtgtgggagatcagtggccacatcgtgctgaaacgaagga 4532597 Score = 81.8 bits (41), Expect = 2e-12 Identities = 185/233 (79%) Strand = Plus / Minus Query: 191 caggcatactacctgtcagtaccttttcctgttgagaaggcgcctaccaagaagatcccc 250 |||||||||||| || |||| ||||| |||||||||||||| ||||||||| ||| | Sbjct: 4533219 caggcatactacttgacagtgcctttccctgttgagaaggcagctaccaagaggattttc 4533160 Query: 251 cttgccaagtgtgcgctgaatagtggagtgaaggtgtcaaaactgacaaatttccccgtg 310 ||||| || | | ||||||||||||| |||||||| || |||| || | ||| ||| Sbjct: 4533159 cttgctgagggcacaatgaatagtggagtaaaggtgtccaagctgatgaactaccctgtg 4533100 Query: 311 agaggtctagtgtttgagagagggaacacactgaaggatttggctgatgtggttaccaac 370 || || || || |||||| |||| ||| |||||| ||| |||| |||||||| ||| | Sbjct: 4533099 aggggactggtttttgagggaggcaactcactgagcgatctggccaatgtggtttccagc 4533040 Query: 371 gcttgcatttggctccaggagaacaatgttcctttcaacgtcctcatctctga 423 ||||| || ||||| ||||| |||||||| |||| ||| || || |||||||| Sbjct: 4533039 gcttgtatctggctgcaggacaacaatgtgccttacaatgttcttatctctga 4532987
>emb|AL928749.4|CNS08CBM Oryza sativa chromosome 12, . BAC OSJNBa0002O20 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 129155 Score = 135 bits (68), Expect = 2e-28 Identities = 155/184 (84%) Strand = Plus / Plus Query: 11 agccctattgagtacggtcatgtgcttctcattccgcgtgtccttgaccgcctgcctcag 70 ||||| ||||| || || ||||| ||||||||||| ||||| || ||||||||||||||| Sbjct: 70926 agcccaattgaatatggccatgttcttctcattccccgtgtactggaccgcctgcctcag 70985 Query: 71 caaattgatcctgaaagcttcctgcttgcactacacatggcagctgaggctgcaagccca 130 ||||| | || |||||| |||||||||| |||||||| ||||| || ||||||||| Sbjct: 70986 aggattgaccaggagagcttcttgcttgcactgcacatggctgctgaagccgcaagccca 71045 Query: 131 tactttaggcttggttacaacagcttgggtgcctttgccaccatcaatcatctccacttc 190 ||||| |||||||| || || || |||||||||||||| |||||||| || |||||||| Sbjct: 71046 tacttcaggcttggctataatagtttgggtgcctttgcaaccatcaaccacctccacttt 71105 Query: 191 cagg 194 |||| Sbjct: 71106 cagg 71109 Score = 111 bits (56), Expect = 3e-21 Identities = 98/112 (87%) Strand = Plus / Plus Query: 452 cagtgctatgctgagaaacaggctcttggtgaagtgagccaggatctgctggacacgcag 511 ||||||||||| ||||| |||||||| || |||||||||||||| || |||||||||||| Sbjct: 72051 cagtgctatgccgagaagcaggctctgggagaagtgagccaggagctactggacacgcag 72110 Query: 512 gtgaaccctgcagtatgggagatcagtggacacattgttctgaaacggagga 563 || ||||| || || |||||||||||||| ||||| || |||||||| |||| Sbjct: 72111 gttaacccagctgtgtgggagatcagtggccacatcgtgctgaaacgaagga 72162 Score = 81.8 bits (41), Expect = 2e-12 Identities = 185/233 (79%) Strand = Plus / Plus Query: 191 caggcatactacctgtcagtaccttttcctgttgagaaggcgcctaccaagaagatcccc 250 |||||||||||| || |||| ||||| |||||||||||||| ||||||||| ||| | Sbjct: 71540 caggcatactacttgacagtgcctttccctgttgagaaggcagctaccaagaggattttc 71599 Query: 251 cttgccaagtgtgcgctgaatagtggagtgaaggtgtcaaaactgacaaatttccccgtg 310 ||||| || | | ||||||||||||| |||||||| || |||| || | ||| ||| Sbjct: 71600 cttgctgagggcacaatgaatagtggagtaaaggtgtccaagctgatgaactaccctgtg 71659 Query: 311 agaggtctagtgtttgagagagggaacacactgaaggatttggctgatgtggttaccaac 370 || || || || |||||| |||| ||| |||||| ||| |||| |||||||| ||| | Sbjct: 71660 aggggactggtttttgagggaggcaactcactgagcgatctggccaatgtggtttccagc 71719 Query: 371 gcttgcatttggctccaggagaacaatgttcctttcaacgtcctcatctctga 423 ||||| || ||||| ||||| |||||||| |||| ||| || || |||||||| Sbjct: 71720 gcttgtatctggctgcaggacaacaatgtgccttacaatgttcttatctctga 71772
>ref|NM_118819.2| Arabidopsis thaliana VTC2 (VITAMIN C DEFECTIVE 2) AT4G26850 (VTC2) mRNA, complete cds Length = 2084 Score = 109 bits (55), Expect = 1e-20 Identities = 91/103 (88%) Strand = Plus / Plus Query: 93 tgcttgcactacacatggcagctgaggctgcaagcccatactttaggcttggttacaaca 152 |||||||| | |||||||| ||||||||||| | |||||||| || || |||||||||| Sbjct: 1123 tgcttgcagttcacatggctgctgaggctgctaatccatacttcagactcggttacaaca 1182 Query: 153 gcttgggtgcctttgccaccatcaatcatctccacttccaggc 195 |||||||||| |||||||| ||||||||||||||||| ||||| Sbjct: 1183 gcttgggtgcttttgccactatcaatcatctccactttcaggc 1225 Score = 65.9 bits (33), Expect = 1e-07 Identities = 126/157 (80%) Strand = Plus / Plus Query: 399 ttcctttcaacgtcctcatctctgattctggtagaaggatcttcgtttttcctcagtgct 458 ||||||||||| | ||||||||||||| ||| || ||||||| | | || ||||| | Sbjct: 1417 ttcctttcaacattctcatctctgattgtggaaggcagatcttcttaatgccacagtgtt 1476 Query: 459 atgctgagaaacaggctcttggtgaagtgagccaggatctgctggacacgcaggtgaacc 518 | || |||||||||||||| ||||||||||||| ||| | |||| || || ||||||| Sbjct: 1477 acgcagagaaacaggctctaggtgaagtgagcccggaggtattggaaacacaagtgaacc 1536 Query: 519 ctgcagtatgggagatcagtggacacattgttctgaa 555 | || || |||||||| ||||| ||||| || ||||| Sbjct: 1537 cagccgtgtgggagataagtggtcacatggtactgaa 1573
>gb|AY056134.1| Arabidopsis thaliana unknown protein (At4g26850) mRNA, complete cds Length = 2097 Score = 109 bits (55), Expect = 1e-20 Identities = 91/103 (88%) Strand = Plus / Plus Query: 93 tgcttgcactacacatggcagctgaggctgcaagcccatactttaggcttggttacaaca 152 |||||||| | |||||||| ||||||||||| | |||||||| || || |||||||||| Sbjct: 1121 tgcttgcagttcacatggctgctgaggctgctaatccatacttcagactcggttacaaca 1180 Query: 153 gcttgggtgcctttgccaccatcaatcatctccacttccaggc 195 |||||||||| |||||||| ||||||||||||||||| ||||| Sbjct: 1181 gcttgggtgcttttgccactatcaatcatctccactttcaggc 1223 Score = 65.9 bits (33), Expect = 1e-07 Identities = 126/157 (80%) Strand = Plus / Plus Query: 399 ttcctttcaacgtcctcatctctgattctggtagaaggatcttcgtttttcctcagtgct 458 ||||||||||| | ||||||||||||| ||| || ||||||| | | || ||||| | Sbjct: 1415 ttcctttcaacattctcatctctgattgtggaaggcagatcttcttaatgccacagtgtt 1474 Query: 459 atgctgagaaacaggctcttggtgaagtgagccaggatctgctggacacgcaggtgaacc 518 | || |||||||||||||| ||||||||||||| ||| | |||| || || ||||||| Sbjct: 1475 acgcagagaaacaggctctaggtgaagtgagcccggaggtattggaaacacaagtgaacc 1534 Query: 519 ctgcagtatgggagatcagtggacacattgttctgaa 555 | || || |||||||| ||||| ||||| || ||||| Sbjct: 1535 cagccgtgtgggagataagtggtcacatggtactgaa 1571
>gb|AY093138.1| Arabidopsis thaliana putative protein (At4g26850) mRNA, complete cds Length = 2045 Score = 109 bits (55), Expect = 1e-20 Identities = 91/103 (88%) Strand = Plus / Plus Query: 93 tgcttgcactacacatggcagctgaggctgcaagcccatactttaggcttggttacaaca 152 |||||||| | |||||||| ||||||||||| | |||||||| || || |||||||||| Sbjct: 1121 tgcttgcagttcacatggctgctgaggctgctaatccatacttcagactcggttacaaca 1180 Query: 153 gcttgggtgcctttgccaccatcaatcatctccacttccaggc 195 |||||||||| |||||||| ||||||||||||||||| ||||| Sbjct: 1181 gcttgggtgcttttgccactatcaatcatctccactttcaggc 1223 Score = 65.9 bits (33), Expect = 1e-07 Identities = 126/157 (80%) Strand = Plus / Plus Query: 399 ttcctttcaacgtcctcatctctgattctggtagaaggatcttcgtttttcctcagtgct 458 ||||||||||| | ||||||||||||| ||| || ||||||| | | || ||||| | Sbjct: 1415 ttcctttcaacattctcatctctgattgtggaaggcagatcttcttaatgccacagtgtt 1474 Query: 459 atgctgagaaacaggctcttggtgaagtgagccaggatctgctggacacgcaggtgaacc 518 | || |||||||||||||| ||||||||||||| ||| | |||| || || ||||||| Sbjct: 1475 acgcagagaaacaggctctaggtgaagtgagcccggaggtattggaaacacaagtgaacc 1534 Query: 519 ctgcagtatgggagatcagtggacacattgttctgaa 555 | || || |||||||| ||||| ||||| || ||||| Sbjct: 1535 cagccgtgtgggagataagtggtcacatggtactgaa 1571
>gb|BT006589.1| Arabidopsis thaliana At4g26850 mRNA, complete cds Length = 1329 Score = 109 bits (55), Expect = 1e-20 Identities = 91/103 (88%) Strand = Plus / Plus Query: 93 tgcttgcactacacatggcagctgaggctgcaagcccatactttaggcttggttacaaca 152 |||||||| | |||||||| ||||||||||| | |||||||| || || |||||||||| Sbjct: 620 tgcttgcagttcacatggctgctgaggctgctaatccatacttcagactcggttacaaca 679 Query: 153 gcttgggtgcctttgccaccatcaatcatctccacttccaggc 195 |||||||||| |||||||| ||||||||||||||||| ||||| Sbjct: 680 gcttgggtgcttttgccactatcaatcatctccactttcaggc 722 Score = 65.9 bits (33), Expect = 1e-07 Identities = 126/157 (80%) Strand = Plus / Plus Query: 399 ttcctttcaacgtcctcatctctgattctggtagaaggatcttcgtttttcctcagtgct 458 ||||||||||| | ||||||||||||| ||| || ||||||| | | || ||||| | Sbjct: 914 ttcctttcaacattctcatctctgattgtggaaggcagatcttcttaatgccacagtgtt 973 Query: 459 atgctgagaaacaggctcttggtgaagtgagccaggatctgctggacacgcaggtgaacc 518 | || |||||||||||||| ||||||||||||| ||| | |||| || || ||||||| Sbjct: 974 acgcagagaaacaggctctaggtgaagtgagcccggaggtattggaaacacaagtgaacc 1033 Query: 519 ctgcagtatgggagatcagtggacacattgttctgaa 555 | || || |||||||| ||||| ||||| || ||||| Sbjct: 1034 cagccgtgtgggagataagtggtcacatggtactgaa 1070
>emb|AL161566.2|ATCHRIV66 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 66 Length = 198372 Score = 107 bits (54), Expect = 4e-20 Identities = 90/102 (88%) Strand = Plus / Minus Query: 93 tgcttgcactacacatggcagctgaggctgcaagcccatactttaggcttggttacaaca 152 |||||||| | |||||||| ||||||||||| | |||||||| || || |||||||||| Sbjct: 4004 tgcttgcagttcacatggctgctgaggctgctaatccatacttcagactcggttacaaca 3945 Query: 153 gcttgggtgcctttgccaccatcaatcatctccacttccagg 194 |||||||||| |||||||| ||||||||||||||||| |||| Sbjct: 3944 gcttgggtgcttttgccactatcaatcatctccactttcagg 3903 Score = 56.0 bits (28), Expect = 1e-04 Identities = 76/92 (82%) Strand = Plus / Minus Query: 464 gagaaacaggctcttggtgaagtgagccaggatctgctggacacgcaggtgaaccctgca 523 |||||||||||||| ||||||||||||| ||| | |||| || || |||||||| || Sbjct: 3467 gagaaacaggctctaggtgaagtgagcccggaggtattggaaacacaagtgaacccagcc 3408 Query: 524 gtatgggagatcagtggacacattgttctgaa 555 || |||||||| ||||| ||||| || ||||| Sbjct: 3407 gtgtgggagataagtggtcacatggtactgaa 3376
>emb|AL161565.2|ATCHRIV65 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 65 Length = 198320 Score = 107 bits (54), Expect = 4e-20 Identities = 90/102 (88%) Strand = Plus / Minus Query: 93 tgcttgcactacacatggcagctgaggctgcaagcccatactttaggcttggttacaaca 152 |||||||| | |||||||| ||||||||||| | |||||||| || || |||||||||| Sbjct: 197324 tgcttgcagttcacatggctgctgaggctgctaatccatacttcagactcggttacaaca 197265 Query: 153 gcttgggtgcctttgccaccatcaatcatctccacttccagg 194 |||||||||| |||||||| ||||||||||||||||| |||| Sbjct: 197264 gcttgggtgcttttgccactatcaatcatctccactttcagg 197223 Score = 56.0 bits (28), Expect = 1e-04 Identities = 76/92 (82%) Strand = Plus / Minus Query: 464 gagaaacaggctcttggtgaagtgagccaggatctgctggacacgcaggtgaaccctgca 523 |||||||||||||| ||||||||||||| ||| | |||| || || |||||||| || Sbjct: 196787 gagaaacaggctctaggtgaagtgagcccggaggtattggaaacacaagtgaacccagcc 196728 Query: 524 gtatgggagatcagtggacacattgttctgaa 555 || |||||||| ||||| ||||| || ||||| Sbjct: 196727 gtgtgggagataagtggtcacatggtactgaa 196696
>emb|AL035440.2|ATF10M23 Arabidopsis thaliana DNA chromosome 4, BAC clone F10M23 (ESSA project) Length = 128574 Score = 107 bits (54), Expect = 4e-20 Identities = 90/102 (88%) Strand = Plus / Minus Query: 93 tgcttgcactacacatggcagctgaggctgcaagcccatactttaggcttggttacaaca 152 |||||||| | |||||||| ||||||||||| | |||||||| || || |||||||||| Sbjct: 48161 tgcttgcagttcacatggctgctgaggctgctaatccatacttcagactcggttacaaca 48102 Query: 153 gcttgggtgcctttgccaccatcaatcatctccacttccagg 194 |||||||||| |||||||| ||||||||||||||||| |||| Sbjct: 48101 gcttgggtgcttttgccactatcaatcatctccactttcagg 48060 Score = 56.0 bits (28), Expect = 1e-04 Identities = 76/92 (82%) Strand = Plus / Minus Query: 464 gagaaacaggctcttggtgaagtgagccaggatctgctggacacgcaggtgaaccctgca 523 |||||||||||||| ||||||||||||| ||| | |||| || || |||||||| || Sbjct: 47624 gagaaacaggctctaggtgaagtgagcccggaggtattggaaacacaagtgaacccagcc 47565 Query: 524 gtatgggagatcagtggacacattgttctgaa 555 || |||||||| ||||| ||||| || ||||| Sbjct: 47564 gtgtgggagataagtggtcacatggtactgaa 47533
>gb|AF508793.1| Arabidopsis thaliana VTC2 (VTC2) gene, complete cds Length = 1884 Score = 99.6 bits (50), Expect = 1e-17 Identities = 89/102 (87%) Strand = Plus / Plus Query: 93 tgcttgcactacacatggcagctgaggctgcaagcccatactttaggcttggttacaaca 152 |||||||| | |||||||| ||||||||||| | |||||||| || || | |||||||| Sbjct: 997 tgcttgcagttcacatggctgctgaggctgctaatccatacttcagactcgattacaaca 1056 Query: 153 gcttgggtgcctttgccaccatcaatcatctccacttccagg 194 |||||||||| |||||||| ||||||||||||||||| |||| Sbjct: 1057 gcttgggtgcttttgccactatcaatcatctccactttcagg 1098 Score = 56.0 bits (28), Expect = 1e-04 Identities = 76/92 (82%) Strand = Plus / Plus Query: 464 gagaaacaggctcttggtgaagtgagccaggatctgctggacacgcaggtgaaccctgca 523 |||||||||||||| ||||||||||||| ||| | |||| || || |||||||| || Sbjct: 1534 gagaaacaggctctaggtgaagtgagcccggaggtattggaaacacaagtgaacccagcc 1593 Query: 524 gtatgggagatcagtggacacattgttctgaa 555 || |||||||| ||||| ||||| || ||||| Sbjct: 1594 gtgtgggagataagtggtcacatggtactgaa 1625
>emb|CT573504.2| Medicago truncatula chromosome 5 clone mth2-178o19, COMPLETE SEQUENCE Length = 132030 Score = 73.8 bits (37), Expect = 6e-10 Identities = 100/121 (82%) Strand = Plus / Plus Query: 74 attgatcctgaaagcttcctgcttgcactacacatggcagctgaggctgcaagcccatac 133 ||||||| ||| |||||| |||||||||| |||||||||||||| ||||| | ||||| Sbjct: 102197 attgatcatgagagcttcttgcttgcacttcacatggcagctgaagctgctaatccatat 102256 Query: 134 tttaggcttggttacaacagcttgggtgcctttgccaccatcaatcatctccacttccag 193 ||| | | |||||||||||| | ||||| ||||| || || || ||||| ||||||||| Sbjct: 102257 tttcgattgggttacaacagccttggtgcatttgcaactataaaccatcttcacttccag 102316 Query: 194 g 194 | Sbjct: 102317 g 102317
>gb|AY570979.1| Xerophyta humilis clone HC437 unknown mRNA Length = 1266 Score = 69.9 bits (35), Expect = 9e-09 Identities = 62/71 (87%) Strand = Plus / Plus Query: 125 agcccatactttaggcttggttacaacagcttgggtgcctttgccaccatcaatcatctc 184 ||||||||||| ||||| ||||||||||| | ||||| ||||||||||| |||||||| Sbjct: 371 agcccatacttcaggctaggttacaacagtcttggtgcttttgccaccattaatcatctt 430 Query: 185 cacttccaggc 195 || |||||||| Sbjct: 431 catttccaggc 441 Score = 60.0 bits (30), Expect = 8e-06 Identities = 72/86 (83%) Strand = Plus / Plus Query: 449 cctcagtgctatgctgagaaacaggctcttggtgaagtgagccaggatctgctggacacg 508 |||||||| ||||| ||||| ||||| ||||| |||||||||| || |||||||||| Sbjct: 698 cctcagtgttatgcagagaagcaggcacttgggcaagtgagccaagagttgctggacact 757 Query: 509 caggtgaaccctgcagtatgggagat 534 || || || ||||| ||||||||||| Sbjct: 758 caagttaatcctgccgtatgggagat 783
>gb|BT013858.1| Lycopersicon esculentum clone 132824R, mRNA sequence Length = 2013 Score = 63.9 bits (32), Expect = 5e-07 Identities = 80/96 (83%) Strand = Plus / Plus Query: 133 ctttaggcttggttacaacagcttgggtgcctttgccaccatcaatcatctccacttcca 192 ||||||| | ||||| ||||| ||||| || ||||| ||||| || || ||||||||||| Sbjct: 1086 ctttagggtaggttataacagtttgggcgcttttgctaccattaaccacctccacttcca 1145 Query: 193 ggcatactacctgtcagtaccttttcctgttgagaa 228 ||| || ||| ||||||| || ||||| |||||||| Sbjct: 1146 ggcgtattacttgtcagtgccatttccagttgagaa 1181 Score = 56.0 bits (28), Expect = 1e-04 Identities = 40/44 (90%) Strand = Plus / Plus Query: 500 ctggacacgcaggtgaaccctgcagtatgggagatcagtggaca 543 |||||||| |||||||||||||| |||||||| || |||||||| Sbjct: 1459 ctggacactcaggtgaaccctgctgtatgggaaattagtggaca 1502
>ref|NM_190314.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1059 Score = 58.0 bits (29), Expect = 3e-05 Identities = 53/61 (86%) Strand = Plus / Plus Query: 141 ttggttacaacagcttgggtgcctttgccaccatcaatcatctccacttccaggcatact 200 ||||||||||||| |||||| || || || ||||||||||||||||||||||| |||| Sbjct: 473 ttggttacaacagtctgggtggtttcgcaactatcaatcatctccacttccaggcgtact 532 Query: 201 a 201 | Sbjct: 533 a 533
>gb|BT016612.1| Zea mays clone Contig445 mRNA sequence Length = 1419 Score = 58.0 bits (29), Expect = 3e-05 Identities = 56/65 (86%) Strand = Plus / Plus Query: 141 ttggttacaacagcttgggtgcctttgccaccatcaatcatctccacttccaggcatact 200 ||||||| |||||| |||| | |||||| || ||||| || || |||||||||||||||| Sbjct: 680 ttggttataacagcctgggcggctttgcaactatcaaccaccttcacttccaggcatact 739 Query: 201 acctg 205 ||||| Sbjct: 740 acctg 744 Score = 42.1 bits (21), Expect = 2.0 Identities = 27/29 (93%) Strand = Plus / Plus Query: 401 cctttcaacgtcctcatctctgattctgg 429 |||||||| |||||||||||||| ||||| Sbjct: 928 cctttcaatgtcctcatctctgaatctgg 956
>dbj|AK100274.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023072P03, full insert sequence Length = 2135 Score = 58.0 bits (29), Expect = 3e-05 Identities = 53/61 (86%) Strand = Plus / Plus Query: 141 ttggttacaacagcttgggtgcctttgccaccatcaatcatctccacttccaggcatact 200 ||||||||||||| |||||| || || || ||||||||||||||||||||||| |||| Sbjct: 1458 ttggttacaacagtctgggtggtttcgcaactatcaatcatctccacttccaggcgtact 1517 Query: 201 a 201 | Sbjct: 1518 a 1518
>dbj|AP003791.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:B1065G12 Length = 165006 Score = 52.0 bits (26), Expect = 0.002 Identities = 47/54 (87%) Strand = Plus / Plus Query: 141 ttggttacaacagcttgggtgcctttgccaccatcaatcatctccacttccagg 194 ||||||||||||| |||||| || || || |||||||||||||||||||||| Sbjct: 41227 ttggttacaacagtctgggtggtttcgcaactatcaatcatctccacttccagg 41280
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 52.0 bits (26), Expect = 0.002 Identities = 47/54 (87%) Strand = Plus / Plus Query: 141 ttggttacaacagcttgggtgcctttgccaccatcaatcatctccacttccagg 194 ||||||||||||| |||||| || || || |||||||||||||||||||||| Sbjct: 39239521 ttggttacaacagtctgggtggtttcgcaactatcaatcatctccacttccagg 39239574
>dbj|AP003313.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0035F12 Length = 153439 Score = 52.0 bits (26), Expect = 0.002 Identities = 47/54 (87%) Strand = Plus / Plus Query: 141 ttggttacaacagcttgggtgcctttgccaccatcaatcatctccacttccagg 194 ||||||||||||| |||||| || || || |||||||||||||||||||||| Sbjct: 115281 ttggttacaacagtctgggtggtttcgcaactatcaatcatctccacttccagg 115334
>dbj|AP006757.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0551C06 Length = 149829 Score = 52.0 bits (26), Expect = 0.002 Identities = 47/54 (87%) Strand = Plus / Plus Query: 141 ttggttacaacagcttgggtgcctttgccaccatcaatcatctccacttccagg 194 ||||||||||||| |||||| || || || |||||||||||||||||||||| Sbjct: 20767 ttggttacaacagtctgggtggtttcgcaactatcaatcatctccacttccagg 20820
>ref|NM_124894.4| Arabidopsis thaliana unknown protein AT5G55120 mRNA, complete cds Length = 1874 Score = 50.1 bits (25), Expect = 0.008 Identities = 64/77 (83%) Strand = Plus / Plus Query: 399 ttcctttcaacgtcctcatctctgattctggtagaaggatcttcgtttttcctcagtgct 458 ||||||||||| | ||||||||||| ||||| | | | |||||| || | |||||||| | Sbjct: 1325 ttcctttcaacattctcatctctgactctggcaaacgaatcttccttctccctcagtgtt 1384 Query: 459 atgctgagaaacaggct 475 | || |||||||||||| Sbjct: 1385 acgcagagaaacaggct 1401
>gb|AY091285.1| Arabidopsis thaliana unknown protein (At5g55120) mRNA, complete cds Length = 1327 Score = 50.1 bits (25), Expect = 0.008 Identities = 64/77 (83%) Strand = Plus / Plus Query: 399 ttcctttcaacgtcctcatctctgattctggtagaaggatcttcgtttttcctcagtgct 458 ||||||||||| | ||||||||||| ||||| | | | |||||| || | |||||||| | Sbjct: 905 ttcctttcaacattctcatctctgactctggcaaacgaatcttccttctccctcagtgtt 964 Query: 459 atgctgagaaacaggct 475 | || |||||||||||| Sbjct: 965 acgcagagaaacaggct 981
>gb|AY063788.1| Arabidopsis thaliana unknown protein (At5g55120) mRNA, complete cds Length = 1788 Score = 50.1 bits (25), Expect = 0.008 Identities = 64/77 (83%) Strand = Plus / Plus Query: 399 ttcctttcaacgtcctcatctctgattctggtagaaggatcttcgtttttcctcagtgct 458 ||||||||||| | ||||||||||| ||||| | | | |||||| || | |||||||| | Sbjct: 1221 ttcctttcaacattctcatctctgactctggcaaacgaatcttccttctccctcagtgtt 1280 Query: 459 atgctgagaaacaggct 475 | || |||||||||||| Sbjct: 1281 acgcagagaaacaggct 1297
>emb|BX831350.1|CNS0A1O4 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTLS80ZC01 of Adult vegetative tissue of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1806 Score = 50.1 bits (25), Expect = 0.008 Identities = 64/77 (83%) Strand = Plus / Plus Query: 399 ttcctttcaacgtcctcatctctgattctggtagaaggatcttcgtttttcctcagtgct 458 ||||||||||| | ||||||||||| ||||| | | | |||||| || | |||||||| | Sbjct: 1259 ttcctttcaacattctcatctctgactctggcaaacgaatcttccttctccctcagtgtt 1318 Query: 459 atgctgagaaacaggct 475 | || |||||||||||| Sbjct: 1319 acgcagagaaacaggct 1335
>emb|BX829969.1|CNS0A043 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB4ZG03 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1694 Score = 50.1 bits (25), Expect = 0.008 Identities = 64/77 (83%) Strand = Plus / Plus Query: 399 ttcctttcaacgtcctcatctctgattctggtagaaggatcttcgtttttcctcagtgct 458 ||||||||||| | ||||||||||| ||||| | | | |||||| || | |||||||| | Sbjct: 1209 ttcctttcaacattctcatctctgactctggcaaacgaatcttccttctccctcagtgtt 1268 Query: 459 atgctgagaaacaggct 475 | || |||||||||||| Sbjct: 1269 acgcagagaaacaggct 1285
>emb|BX831865.1|CNS09ZT1 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH35ZF07 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1838 Score = 50.1 bits (25), Expect = 0.008 Identities = 64/77 (83%) Strand = Plus / Plus Query: 399 ttcctttcaacgtcctcatctctgattctggtagaaggatcttcgtttttcctcagtgct 458 ||||||||||| | ||||||||||| ||||| | | | |||||| || | |||||||| | Sbjct: 1324 ttcctttcaacattctcatctctgactctggcaaacgaatcttccttctccctcagtgtt 1383 Query: 459 atgctgagaaacaggct 475 | || |||||||||||| Sbjct: 1384 acgcagagaaacaggct 1400
>emb|BX831807.1|CNS09ZUD Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH30ZF08 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1692 Score = 50.1 bits (25), Expect = 0.008 Identities = 64/77 (83%) Strand = Plus / Plus Query: 399 ttcctttcaacgtcctcatctctgattctggtagaaggatcttcgtttttcctcagtgct 458 ||||||||||| | ||||||||||| ||||| | | | |||||| || | |||||||| | Sbjct: 1185 ttcctttcaacattctcatctctgactctggcaaacgaatcttccttctccctcagtgtt 1244 Query: 459 atgctgagaaacaggct 475 | || |||||||||||| Sbjct: 1245 acgcagagaaacaggct 1261
>emb|BX294151.1| Pirellula sp. strain 1 complete genome; segment 19/24 Length = 295650 Score = 46.1 bits (23), Expect = 0.13 Identities = 23/23 (100%) Strand = Plus / Plus Query: 153 gcttgggtgcctttgccaccatc 175 ||||||||||||||||||||||| Sbjct: 43619 gcttgggtgcctttgccaccatc 43641
>gb|AE009937.1|AE009937 Pyrobaculum aerophilum strain IM2 section 192 of 201 of the complete genome Length = 11207 Score = 46.1 bits (23), Expect = 0.13 Identities = 23/23 (100%) Strand = Plus / Plus Query: 124 aagcccatactttaggcttggtt 146 ||||||||||||||||||||||| Sbjct: 2161 aagcccatactttaggcttggtt 2183
>gb|BT018863.1| Zea mays clone EL01N0560H03.d mRNA sequence Length = 1874 Score = 42.1 bits (21), Expect = 2.0 Identities = 27/29 (93%) Strand = Plus / Plus Query: 401 cctttcaacgtcctcatctctgattctgg 429 |||||||| |||||||||||||| ||||| Sbjct: 1423 cctttcaatgtcctcatctctgaatctgg 1451
>ref|XM_676408.1| Aspergillus nidulans FGSC A4 hypothetical protein (AN8231.2), mRNA Length = 915 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 156 tgggtgcctttgccaccatca 176 ||||||||||||||||||||| Sbjct: 536 tgggtgcctttgccaccatca 516
>emb|Z49131.1|CEZC373 Caenorhabditis elegans Cosmid ZC373, complete sequence Length = 27030 Score = 42.1 bits (21), Expect = 2.0 Identities = 24/25 (96%) Strand = Plus / Plus Query: 488 agccaggatctgctggacacgcagg 512 |||||||||||||||||||| |||| Sbjct: 23692 agccaggatctgctggacacccagg 23716
>emb|Z82182.2|HSE90C2 Human DNA sequence from clone LL22NC01-90C2 on chromosome 22 Contains an STSs and GSSs, complete sequence Length = 39004 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 536 agtggacacattgttctgaaa 556 ||||||||||||||||||||| Sbjct: 24908 agtggacacattgttctgaaa 24888
>gb|AC145338.7| Pan troglodytes clone rp43-47g15, complete sequence Length = 202653 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 536 agtggacacattgttctgaaa 556 ||||||||||||||||||||| Sbjct: 28262 agtggacacattgttctgaaa 28242
>ref|NM_077291.2| Caenorhabditis elegans COLlagen family member (col-176) (col-176) mRNA, complete cds Length = 939 Score = 42.1 bits (21), Expect = 2.0 Identities = 24/25 (96%) Strand = Plus / Plus Query: 488 agccaggatctgctggacacgcagg 512 |||||||||||||||||||| |||| Sbjct: 535 agccaggatctgctggacacccagg 559
>emb|BX830641.1|CNS09ZZY Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB9ZD04 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1684 Score = 42.1 bits (21), Expect = 2.0 Identities = 63/77 (81%) Strand = Plus / Plus Query: 399 ttcctttcaacgtcctcatctctgattctggtagaaggatcttcgtttttcctcagtgct 458 ||||||||||| | ||||| ||||| ||||| | | | |||||| || | |||||||| | Sbjct: 1173 ttcctttcaacattctcatatctgactctggcaaacgaatcttccttctccctcagtgtt 1232 Query: 459 atgctgagaaacaggct 475 | || |||||||||||| Sbjct: 1233 acgcagagaaacaggct 1249
>gb|AC151729.6| Mus musculus BAC clone RP24-74F2 from chromosome 9, complete sequence Length = 224139 Score = 42.1 bits (21), Expect = 2.0 Identities = 24/25 (96%) Strand = Plus / Plus Query: 158 ggtgcctttgccaccatcaatcatc 182 |||||||| |||||||||||||||| Sbjct: 119319 ggtgccttagccaccatcaatcatc 119343
>gb|AF153765.1|AF153765 Emericella nidulans S-adenosylmethionine decarboxylase mRNA, partial cds Length = 1086 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 156 tgggtgcctttgccaccatca 176 ||||||||||||||||||||| Sbjct: 542 tgggtgcctttgccaccatca 522
>gb|AY833719.1| Canis familiaris TERT gene, promoter region and partial CDS Length = 2054 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 460 tgctgagaaacaggctcttg 479 |||||||||||||||||||| Sbjct: 1063 tgctgagaaacaggctcttg 1044
>gb|BC064388.1| Homo sapiens lactate dehydrogenase C, transcript variant 1, mRNA (cDNA clone MGC:74967 IMAGE:5744600), complete cds Length = 1331 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 340 actgaaggatttggctgatg 359 |||||||||||||||||||| Sbjct: 255 actgaaggatttggctgatg 274
>ref|NM_017448.1| Homo sapiens lactate dehydrogenase C (LDHC), transcript variant 2, mRNA Length = 1171 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 340 actgaaggatttggctgatg 359 |||||||||||||||||||| Sbjct: 178 actgaaggatttggctgatg 197
>ref|NM_002301.2| Homo sapiens lactate dehydrogenase C (LDHC), transcript variant 1, mRNA Length = 1278 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 340 actgaaggatttggctgatg 359 |||||||||||||||||||| Sbjct: 285 actgaaggatttggctgatg 304
>gb|AY563633.1| Canis familiaris telomerase reverse transcriptase subunit gene, promoter region, 5'UTR, exons 1, 2 and partial cds Length = 5729 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 460 tgctgagaaacaggctcttg 479 |||||||||||||||||||| Sbjct: 4443 tgctgagaaacaggctcttg 4424
>gb|AC009055.10| Homo sapiens chromosome 16 clone RP11-256I9, complete sequence Length = 170831 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 212 ccttttcctgttgagaaggc 231 |||||||||||||||||||| Sbjct: 132174 ccttttcctgttgagaaggc 132193
>gb|AC140109.4| Mus musculus BAC clone RP24-156A17 from chromosome 3, complete sequence Length = 130716 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 135 ttaggcttggttacaacagc 154 |||||||||||||||||||| Sbjct: 110398 ttaggcttggttacaacagc 110379
>gb|AC134434.4| Mus musculus BAC clone RP24-420E8 from chromosome 7, complete sequence Length = 214856 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 312 gaggtctagtgtttgagaga 331 |||||||||||||||||||| Sbjct: 123037 gaggtctagtgtttgagaga 123018
>gb|BC019249.2| Homo sapiens lactate dehydrogenase C, mRNA (cDNA clone IMAGE:4839028), partial cds Length = 1245 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 340 actgaaggatttggctgatg 359 |||||||||||||||||||| Sbjct: 239 actgaaggatttggctgatg 258
>gb|AC115090.8| Homo sapiens chromosome 17, clone CTC-861O14, complete sequence Length = 173716 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 20 gagtacggtcatgtgcttct 39 |||||||||||||||||||| Sbjct: 155346 gagtacggtcatgtgcttct 155365
>emb|AL109940.18|HSJ421D16 Human DNA sequence from clone RP3-421D16 on chromosome 6q26-27 Contains part of the gene for smooth muscle cell associated protein 2 (SMAP2) or secreted modular calcium binding protein 2 (SMOC2) and two CpG islands, complete sequence Length = 110603 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 204 tgtcagtaccttttcctgtt 223 |||||||||||||||||||| Sbjct: 69704 tgtcagtaccttttcctgtt 69723
>gb|AC025774.5| Homo sapiens chromosome 5 clone CTD-2292N2, complete sequence Length = 155092 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 447 ttcctcagtgctatgctgag 466 |||||||||||||||||||| Sbjct: 11939 ttcctcagtgctatgctgag 11920
>gb|AC164299.2| Mus musculus BAC clone RP23-313K8 from chromosome 1, complete sequence Length = 160562 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 163 ctttgccaccatcaatcatc 182 |||||||||||||||||||| Sbjct: 32059 ctttgccaccatcaatcatc 32078
>emb|BX294142.1| Pirellula sp. strain 1 complete genome; segment 10/24 Length = 294050 Score = 40.1 bits (20), Expect = 7.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 334 gaacacactgaaggatttggctga 357 |||||| ||||||||||||||||| Sbjct: 177692 gaacacgctgaaggatttggctga 177715
>emb|AL935256.1| Lactobacillus plantarum strain WCFS1 complete genome; segment 5/11 Length = 302050 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 67 tcagcaaattgatcctgaaa 86 |||||||||||||||||||| Sbjct: 197316 tcagcaaattgatcctgaaa 197297
>emb|AL731853.9| Mouse DNA sequence from clone RP23-128G5 on chromosome 11 Contains the 5' end of the Osbp2 gene for oxysterol binding protein 2, a novel pseudogene, two novel genes, the Dusp18 gene for dual specificity phosphatase 18 and five CpG islands, complete sequence Length = 205509 Score = 40.1 bits (20), Expect = 7.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 460 tgctgagaaacaggctcttggtga 483 |||||| ||||||||||||||||| Sbjct: 188109 tgctgataaacaggctcttggtga 188086
>gb|AY286300.1| Homo sapiens lactate dehydrogenase C (LDHC) mRNA, complete cds; alternatively spliced Length = 1216 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 340 actgaaggatttggctgatg 359 |||||||||||||||||||| Sbjct: 208 actgaaggatttggctgatg 227
>gb|AC010011.5| Drosophila melanogaster 3L BAC RP98-17D14 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence Length = 167026 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 174 tcaatcatctccacttccag 193 |||||||||||||||||||| Sbjct: 62171 tcaatcatctccacttccag 62152
>gb|AC079904.31| Homo sapiens 12 BAC RP11-84J24 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 197964 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 388 ggagaacaatgttcctttca 407 |||||||||||||||||||| Sbjct: 70808 ggagaacaatgttcctttca 70789
>ref|XM_936572.1| PREDICTED: Homo sapiens suppressor of cytokine signaling 7 (SOCS7), mRNA Length = 1725 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 20 gagtacggtcatgtgcttct 39 |||||||||||||||||||| Sbjct: 1589 gagtacggtcatgtgcttct 1570
>dbj|AB169182.1| Macaca fascicularis testis cDNA, clone: QtsA-17816, similar to human lactate dehydrogenase C (LDHC), transcript variant 2,mRNA, RefSeq: NM_017448.1 Length = 1215 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 340 actgaaggatttggctgatg 359 |||||||||||||||||||| Sbjct: 204 actgaaggatttggctgatg 223
>gb|AC160960.5| Mus musculus BAC clone RP24-230O19 from chromosome 13, complete sequence Length = 152915 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 319 agtgtttgagagagggaaca 338 |||||||||||||||||||| Sbjct: 1220 agtgtttgagagagggaaca 1239
>dbj|AK081916.1| Mus musculus 16 days embryo head cDNA, RIKEN full-length enriched library, clone:C130087D18 product:hypothetical Dual specificity protein phosphatase containing protein, full insert sequence Length = 2613 Score = 40.1 bits (20), Expect = 7.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 460 tgctgagaaacaggctcttggtga 483 |||||| ||||||||||||||||| Sbjct: 397 tgctgataaacaggctcttggtga 374
>dbj|AK079664.1| Mus musculus adult male spinal cord cDNA, RIKEN full-length enriched library, clone:A330102O14 product:weakly similar to BA386N14.1 (NOVEL PROTEIN SIMILAR TO A DUAL SPECIFICITY PHOSPHATASE) [Homo sapiens], full insert sequence Length = 2680 Score = 40.1 bits (20), Expect = 7.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 460 tgctgagaaacaggctcttggtga 483 |||||| ||||||||||||||||| Sbjct: 434 tgctgataaacaggctcttggtga 411
>dbj|AK015917.1| Mus musculus adult male testis cDNA, RIKEN full-length enriched library, clone:4930527G07 product:weakly similar to DUAL SPECIFICITY PROTEIN PHOSPHATASE 14 (EC 3.1.3.48) (EC 3.1.3.16) (MITOGEN-ACTIVATED PROTEIN KINASE PHOSPHATASE 6) (MAP KINASE PHOSPHATASE 6) (MKP-6) [Mus musculus], full insert sequence Length = 1161 Score = 40.1 bits (20), Expect = 7.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 460 tgctgagaaacaggctcttggtga 483 |||||| ||||||||||||||||| Sbjct: 422 tgctgataaacaggctcttggtga 399
>gb|AC084759.2|AC084759 Homo sapiens chromosome 15 clone RP11-643A5 map 15q21.3, complete sequence Length = 173921 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 388 ggagaacaatgttcctttca 407 |||||||||||||||||||| Sbjct: 113693 ggagaacaatgttcctttca 113712
>gb|AF401097.1| Homo sapiens lactate dehydrogenase C (LDHC) mRNA, complete sequence, alternatively spliced Length = 1047 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 340 actgaaggatttggctgatg 359 |||||||||||||||||||| Sbjct: 178 actgaaggatttggctgatg 197
>gb|AC124789.12| Homo sapiens chromosome 17, clone RP11-923C2, complete sequence Length = 105701 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 20 gagtacggtcatgtgcttct 39 |||||||||||||||||||| Sbjct: 9527 gagtacggtcatgtgcttct 9546
>gb|AC116340.3| Homo sapiens chromosome 5 clone RP11-118I21, complete sequence Length = 160144 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 447 ttcctcagtgctatgctgag 466 |||||||||||||||||||| Sbjct: 145818 ttcctcagtgctatgctgag 145799
>ref|NM_173745.4| Mus musculus dual specificity phosphatase 18 (Dusp18), mRNA Length = 4589 Score = 40.1 bits (20), Expect = 7.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 460 tgctgagaaacaggctcttggtga 483 |||||| ||||||||||||||||| Sbjct: 397 tgctgataaacaggctcttggtga 374
>gb|AY892969.1| Synthetic construct Homo sapiens clone FLH141605.01L lactate dehydrogenase C (LDHC) mRNA, partial cds Length = 999 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 340 actgaaggatttggctgatg 359 |||||||||||||||||||| Sbjct: 120 actgaaggatttggctgatg 139
>gb|AY890512.1| Synthetic construct Homo sapiens clone FLH141609.01X lactate dehydrogenase C (LDHC) mRNA, complete cds Length = 999 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 340 actgaaggatttggctgatg 359 |||||||||||||||||||| Sbjct: 120 actgaaggatttggctgatg 139
>dbj|AK058181.1| Homo sapiens cDNA FLJ25452 fis, clone TST08814, highly similar to L-LACTATE DEHYDROGENASE X CHAIN (EC 1.1.1.27) Length = 1204 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 340 actgaaggatttggctgatg 359 |||||||||||||||||||| Sbjct: 208 actgaaggatttggctgatg 227
>gb|BC090043.1| Homo sapiens lactate dehydrogenase C, transcript variant 2, mRNA (cDNA clone MGC:111073 IMAGE:30387780), complete cds Length = 1216 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 340 actgaaggatttggctgatg 359 |||||||||||||||||||| Sbjct: 184 actgaaggatttggctgatg 203
>gb|AE003596.5| Drosophila melanogaster chromosome 3L, section 77 of 83 of the complete sequence Length = 249021 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 174 tcaatcatctccacttccag 193 |||||||||||||||||||| Sbjct: 124538 tcaatcatctccacttccag 124519
>gb|AC131987.10| Mus musculus chromosome 13, clone RP24-184L10, complete sequence Length = 174529 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 319 agtgtttgagagagggaaca 338 |||||||||||||||||||| Sbjct: 22388 agtgtttgagagagggaaca 22369
>gb|BC079285.1| Rattus norvegicus dual specificity phosphatase 18, mRNA (cDNA clone MGC:94414 IMAGE:7134264), complete cds Length = 1367 Score = 40.1 bits (20), Expect = 7.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 460 tgctgagaaacaggctcttggtga 483 |||||| ||||||||||||||||| Sbjct: 298 tgctgataaacaggctcttggtga 275
>ref|NM_014598.1| Homo sapiens suppressor of cytokine signaling 7 (SOCS7), mRNA Length = 2162 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 20 gagtacggtcatgtgcttct 39 |||||||||||||||||||| Sbjct: 2054 gagtacggtcatgtgcttct 2035
>ref|NM_001013128.1| Rattus norvegicus dual specificity phosphatase 18 (Dusp18), mRNA Length = 1367 Score = 40.1 bits (20), Expect = 7.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 460 tgctgagaaacaggctcttggtga 483 |||||| ||||||||||||||||| Sbjct: 298 tgctgataaacaggctcttggtga 275
>gb|AC135118.3| Mus musculus BAC clone RP24-450N10 from 3, complete sequence Length = 188353 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 135 ttaggcttggttacaacagc 154 |||||||||||||||||||| Sbjct: 18589 ttaggcttggttacaacagc 18570
>gb|BC020036.1| Mus musculus dual specificity phosphatase 18, mRNA (cDNA clone MGC:28218 IMAGE:3990751), complete cds Length = 2681 Score = 40.1 bits (20), Expect = 7.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 460 tgctgagaaacaggctcttggtga 483 |||||| ||||||||||||||||| Sbjct: 432 tgctgataaacaggctcttggtga 409
>gb|AC167974.3| Mus musculus BAC clone RP23-314B11 from chromosome 1, complete sequence Length = 210757 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 163 ctttgccaccatcaatcatc 182 |||||||||||||||||||| Sbjct: 11846 ctttgccaccatcaatcatc 11865
>gb|J02938.1|HUMLDHX Human testis-specific lactate dehydrogenase (LDHC4, LDHX) mRNA Length = 1179 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 340 actgaaggatttggctgatg 359 |||||||||||||||||||| Sbjct: 186 actgaaggatttggctgatg 205
>gb|U13680.1|HSU13680 Human lactate dehydrogenase-C (LDH-C) mRNA, complete cds Length = 1254 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 340 actgaaggatttggctgatg 359 |||||||||||||||||||| Sbjct: 261 actgaaggatttggctgatg 280 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5,606,281 Number of Sequences: 3902068 Number of extensions: 5606281 Number of successful extensions: 104951 Number of sequences better than 10.0: 87 Number of HSP's better than 10.0 without gapping: 87 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 104678 Number of HSP's gapped (non-prelim): 260 length of query: 576 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 553 effective length of database: 17,143,297,704 effective search space: 9480243630312 effective search space used: 9480243630312 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)