ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | baak4b12 |
|---|---|
| Clone Library Name | barley_pub |
>PPOC_ARATH (P55826) Protoporphyrinogen oxidase, chloroplast precursor (EC| 1.3.3.4) (PPO) Length = 537 Score = 303 bits (777), Expect = 2e-82 Identities = 154/217 (70%), Positives = 176/217 (81%) Frame = +1 Query: 1 AGDPSXLSMKAAFGKVWRLEEXXXXXXXXXXKAIQDKGKNXXXXXXXXXXXXXGQTVASF 180 AGDPS LSMKAAFGKVW+LE+ KAIQ++ GQTV SF Sbjct: 220 AGDPSKLSMKAAFGKVWKLEQNGGSIIGGTFKAIQERKNAPKAERDPRLPKPQGQTVGSF 279 Query: 181 RKGLAMLPNAIASRLGSKVKLSWKLTSITKADNQGYVLGYETPEGLVSVQAKSVIMTIPS 360 RKGL MLP AI++RLGSKVKLSWKL+ ITK ++ GY L YETP+GLVSVQ+KSV+MT+PS Sbjct: 280 RKGLRMLPEAISARLGSKVKLSWKLSGITKLESGGYNLTYETPDGLVSVQSKSVVMTVPS 339 Query: 361 YVASDILRPLSIDAADALSKFYYPPVAAVTVSYPKEAIRKECLIDGELQGFGQLHPRSQG 540 +VAS +LRPLS AA+ALSK YYPPVAAV++SYPKEAIR ECLIDGEL+GFGQLHPR+QG Sbjct: 340 HVASGLLRPLSESAANALSKLYYPPVAAVSISYPKEAIRTECLIDGELKGFGQLHPRTQG 399 Query: 541 VETLGTIYSSSLFPNRAPAGRVLLLNYIGGSTNTGIV 651 VETLGTIYSSSLFPNRAP GR+LLLNYIGGSTNTGI+ Sbjct: 400 VETLGTIYSSSLFPNRAPPGRILLLNYIGGSTNTGIL 436
>PPOC_TOBAC (O24163) Protoporphyrinogen oxidase, chloroplast precursor (EC| 1.3.3.4) (PPO I) (Protoporphyrinogen IX oxidase isozyme I) (PPX I) Length = 548 Score = 294 bits (753), Expect = 1e-79 Identities = 147/217 (67%), Positives = 175/217 (80%) Frame = +1 Query: 1 AGDPSXLSMKAAFGKVWRLEEXXXXXXXXXXKAIQDKGKNXXXXXXXXXXXXXGQTVASF 180 AGDPS LSMKAAFGKVW+LEE KAI+++ GQTV SF Sbjct: 231 AGDPSKLSMKAAFGKVWKLEETGGSIIGGTFKAIKERSSTPKAPRDPRLPKPKGQTVGSF 290 Query: 181 RKGLAMLPNAIASRLGSKVKLSWKLTSITKADNQGYVLGYETPEGLVSVQAKSVIMTIPS 360 RKGL MLP+AI++RLGSK+KLSWKL+SITK++ GY L YETPEG+VS+Q++S++MT+PS Sbjct: 291 RKGLRMLPDAISARLGSKLKLSWKLSSITKSEKGGYHLTYETPEGVVSLQSRSIVMTVPS 350 Query: 361 YVASDILRPLSIDAADALSKFYYPPVAAVTVSYPKEAIRKECLIDGELQGFGQLHPRSQG 540 YVAS+ILRPLS+ AADALS FYYPPV AVT++YP+EAIR E L+DGEL+GFGQLHPR+QG Sbjct: 351 YVASNILRPLSVAAADALSNFYYPPVGAVTITYPQEAIRDERLVDGELKGFGQLHPRTQG 410 Query: 541 VETLGTIYSSSLFPNRAPAGRVLLLNYIGGSTNTGIV 651 VETLGTIYSSSLFPNRAP GRVLLLNYIGG+ N I+ Sbjct: 411 VETLGTIYSSSLFPNRAPKGRVLLLNYIGGAKNPEIL 447
>PPOX_MYXXA (P56601) Protoporphyrinogen oxidase (EC 1.3.3.4) (PPO)| Length = 471 Score = 71.2 bits (173), Expect = 2e-12 Identities = 55/217 (25%), Positives = 94/217 (43%) Frame = +1 Query: 1 AGDPSXLSMKAAFGKVWRLEEXXXXXXXXXXKAIQDKGKNXXXXXXXXXXXXXGQTVASF 180 AGD LS+ A F + ++E +A K + G +++F Sbjct: 170 AGDVEQLSVAATFPMLVKMEREHRSLILGAIRA--QKAQRQAALPAGTAPKLSG-ALSTF 226 Query: 181 RKGLAMLPNAIASRLGSKVKLSWKLTSITKADNQGYVLGYETPEGLVSVQAKSVIMTIPS 360 GL +L +A+A+ LG + ++ + + D G+ L E + V++ P+ Sbjct: 227 DGGLQVLIDALAASLGDAAHVGARVEGLAREDG-GWRLIIEEHGRRAELSVAQVVLAAPA 285 Query: 361 YVASDILRPLSIDAADALSKFYYPPVAAVTVSYPKEAIRKECLIDGELQGFGQLHPRSQG 540 + + +LRPL A ++ Y P+A V + + + GFG L P + Sbjct: 286 HATAKLLRPLDDALAALVAGIAYAPIAVVHLGFDAGTLPAP-------DGFGFLVPAEEQ 338 Query: 541 VETLGTIYSSSLFPNRAPAGRVLLLNYIGGSTNTGIV 651 LG I++S+ FP RA GRVL +GG+ G+V Sbjct: 339 RRMLGAIHASTTFPFRAEGGRVLYSCMVGGARQPGLV 375
>PPOCM_SPIOL (Q94IG7) Protoporphyrinogen oxidase, chloroplast/mitochondrial| precursor (EC 1.3.3.4) (Protox II) (SO-POX2) Length = 531 Score = 67.4 bits (163), Expect = 4e-11 Identities = 60/224 (26%), Positives = 101/224 (45%), Gaps = 12/224 (5%) Frame = +1 Query: 4 GDPSXLSMKAAFGKVWRLEEXXXXXXXXXXKAIQDKGKNXXXXXXXXXXXXXGQTVASFR 183 GDP LSM+ AF ++W +E ++ K + SF+ Sbjct: 210 GDPQSLSMRHAFPELWNIENRFGSVISGFIQSKLSSKKEKGGEKQSSNKKPRVRGSFSFQ 269 Query: 184 KGLAMLPNAIASRLGS-KVKLSWKLTSITKADNQGYVLGYETPEGL-VSVQAKSVIMTIP 357 G+ L + I G ++KL ++ S++ + N G T E VS + S I P Sbjct: 270 GGMQTLVDTICKEFGEDELKLQSEVLSLSYSHN-----GSLTSENWSVSSMSNSTIQDQP 324 Query: 358 SYVASDILRPLS-------IDAADALSKFYYPPVAAVTVSYPKEAIRKECLIDGELQGFG 516 Y A + P++ + + S + P V+ + +S +K + L+GFG Sbjct: 325 -YDAVVVTAPINNVKELKIMKVENPFSLDFIPEVSCLPLSVIITTFKKTN-VKRPLEGFG 382 Query: 517 QLHPRSQ---GVETLGTIYSSSLFPNRAPAGRVLLLNYIGGSTN 639 L P ++ G++TLGT++SS +FP+RAP+ L ++GGS N Sbjct: 383 VLVPSNEQHNGLKTLGTLFSSMMFPDRAPSDVYLYTTFVGGSRN 426
>PPOM_TOBAC (O24164) Protoporphyrinogen oxidase, mitochondrial (EC 1.3.3.4)| (PPO II) (Protoporphyrinogen IX oxidase isozyme II) (PPX II) (PX-2) Length = 504 Score = 64.3 bits (155), Expect = 3e-10 Identities = 58/226 (25%), Positives = 98/226 (43%), Gaps = 14/226 (6%) Frame = +1 Query: 4 GDPSXLSMKAAFGKVWRLEEXXXXXXXXXXKA-IQDKGKNXXXXXXXXXXXXXGQTVASF 180 GDP LSM +F ++W LE+ ++ + K + + SF Sbjct: 179 GDPDSLSMHHSFPELWNLEKRFGSVILGAIRSKLSPKNEKKQGPPKTSANKKRQRGSFSF 238 Query: 181 RKGLAMLPNAIAS-------RLGSKV-KLSWKLTSITKADNQGYVLGYETPEGLVSVQAK 336 G+ L +AI RL S+V +LS T + D+ + Sbjct: 239 LGGMQTLTDAICKDLREDELRLNSRVLELSCSCTEDSAIDSWSIISASPHKRQSEEESFD 298 Query: 337 SVIMTIP--SYVASDILRPLSIDAADALSKFYYPPVAAVTVSYPKEAIRKECLIDGELQG 510 +VIMT P + I + + + + + Y P++ V ++ +E ++ L+G Sbjct: 299 AVIMTAPLCDVKSMKIAKRGNPFLLNFIPEVDYVPLSVVITTFKRENVKYP------LEG 352 Query: 511 FGQLHPRSQ---GVETLGTIYSSSLFPNRAPAGRVLLLNYIGGSTN 639 FG L P + G++TLGT++SS +FP+RAP L ++GGS N Sbjct: 353 FGVLVPSKEQQHGLKTLGTLFSSMMFPDRAPNNVYLYTTFVGGSRN 398
>PPOX_BACSU (P32397) Protoporphyrinogen oxidase (EC 1.3.3.4) (PPO)| Length = 470 Score = 52.4 bits (124), Expect = 1e-06 Identities = 55/218 (25%), Positives = 94/218 (43%), Gaps = 1/218 (0%) Frame = +1 Query: 1 AGDPSXLSMKAAFGKVWRLEEXXXXXXXXXXKAI-QDKGKNXXXXXXXXXXXXXGQTVAS 177 AGD LS+ + F + ++ E+ K Q G+ QT+++ Sbjct: 178 AGDIDKLSLMSTFPQFYQTEQKHRSLILGMKKTRPQGSGQQLTAKKQGQF-----QTLST 232 Query: 178 FRKGLAMLPNAIASRLGSKVKLSWKLTSITKADNQGYVLGYETPEGLVSVQAKSVIMTIP 357 GL L I +L K+ +K T +TK + G E G V++ A SVI+T P Sbjct: 233 ---GLQTLVEEIEKQL--KLTKVYKGTKVTKLSHSGSCYSLELDNG-VTLDADSVIVTAP 286 Query: 358 SYVASDILRPLSIDAADALSKFYYPPVAAVTVSYPKEAIRKECLIDGELQGFGQLHPRSQ 537 A+ +L L A L + VA V + +P+ +++ E +G G + R+ Sbjct: 287 HKAAAGMLSELP--AISHLKNMHSTSVANVALGFPEGSVQMEH------EGTGFVISRNS 338 Query: 538 GVETLGTIYSSSLFPNRAPAGRVLLLNYIGGSTNTGIV 651 +++ +P+ AP G+ LL Y+G + + IV Sbjct: 339 DFAITACTWTNKKWPHAAPEGKTLLRAYVGKAGDESIV 376
>PPOX_MOUSE (P51175) Protoporphyrinogen oxidase (EC 1.3.3.4) (PPO)| Length = 477 Score = 48.1 bits (113), Expect = 2e-05 Identities = 49/157 (31%), Positives = 71/157 (45%), Gaps = 5/157 (3%) Frame = +1 Query: 175 SFRKGLAMLPNAIASRLGSK--VKLSWKLTSITKADNQGYVLGYETPEGLVSVQAKSVIM 348 S R GL +LP A+ + L SK LS + +G ++ G S++A +I Sbjct: 228 SLRGGLEVLPQALHNHLASKGVTVLSGQPVCGLSLQPEGR---WKVSLGDSSLEADHIIS 284 Query: 349 TIPSYVASDILRPLSIDAADALSKFYYPPVAAVTVSYPKEAIRKECLIDGELQGFGQLHP 528 IP+ S +L + A LS VA V + Y R CL +QGFG L P Sbjct: 285 AIPASELSKLLPAEAAPLARILSTIKAVSVAVVNLQY-----RGACL---PVQGFGHLVP 336 Query: 529 RSQGVETLGTIYSSSLFPNR---APAGRVLLLNYIGG 630 S+ LG +Y S FP + P+ RV ++ +GG Sbjct: 337 SSEDPTVLGIVYDSVAFPEQDGNPPSLRVTVM--LGG 371
>PPOX_MACFA (Q60HD5) Protoporphyrinogen oxidase (EC 1.3.3.4) (PPO)| Length = 477 Score = 47.8 bits (112), Expect = 3e-05 Identities = 49/160 (30%), Positives = 75/160 (46%), Gaps = 7/160 (4%) Frame = +1 Query: 175 SFRKGLAMLPNAIASRLGSK---VKLSWKLTSIT-KADNQGYVLGYETPEGLVSVQAKSV 342 S R GL MLP A+ + L S+ V + ++ +A+ + V ++ S++A V Sbjct: 228 SLRGGLEMLPQALETHLTSRGVSVLRGQPVCGLSLQAEGRWKVSLRDS-----SLEADHV 282 Query: 343 IMTIPSYVASDILRPLSIDAADALSKFYYPPVAAVTVSYPKEAIRKECLIDGELQGFGQL 522 I IP+ V S++L + A ALS VA V + Y + +QGFG L Sbjct: 283 ISAIPASVLSELLPAEAAPLARALSAITAVSVAVVNLQYQGAHL--------PVQGFGHL 334 Query: 523 HPRSQGVETLGTIYSSSLFPNR---APAGRVLLLNYIGGS 633 P S+ LG +Y S FP + P RV ++ +GGS Sbjct: 335 VPSSEDPGVLGIVYDSVAFPEQDGSPPGLRVTVM--LGGS 372
>PPOX_HUMAN (P50336) Protoporphyrinogen oxidase (EC 1.3.3.4) (PPO)| Length = 477 Score = 47.8 bits (112), Expect = 3e-05 Identities = 49/160 (30%), Positives = 75/160 (46%), Gaps = 7/160 (4%) Frame = +1 Query: 175 SFRKGLAMLPNAIASRLGSK---VKLSWKLTSIT-KADNQGYVLGYETPEGLVSVQAKSV 342 S R GL MLP A+ + L S+ V + ++ +A+ + V ++ S++A V Sbjct: 228 SLRGGLEMLPQALETHLTSRGVSVLRGQPVCGLSLQAEGRWKVSLRDS-----SLEADHV 282 Query: 343 IMTIPSYVASDILRPLSIDAADALSKFYYPPVAAVTVSYPKEAIRKECLIDGELQGFGQL 522 I IP+ V S++L + A ALS VA V + Y + +QGFG L Sbjct: 283 ISAIPASVLSELLPAEAAPLARALSAITAVSVAVVNLQYQGAHL--------PVQGFGHL 334 Query: 523 HPRSQGVETLGTIYSSSLFPNR---APAGRVLLLNYIGGS 633 P S+ LG +Y S FP + P RV ++ +GGS Sbjct: 335 VPSSEDPGVLGIVYDSVAFPEQDGSPPGLRVTVM--LGGS 372
>AES_RAT (P63003) Amino-terminal enhancer of split (Amino enhancer of split)| (GRG protein) (ESP1 protein) (R-esp1) Length = 197 Score = 33.9 bits (76), Expect = 0.43 Identities = 17/36 (47%), Positives = 20/36 (55%) Frame = -3 Query: 252 LP*QLDFTTQPRCDGIREHGQTLPERCHRLSLWCRK 145 LP QL FTT CD I++ Q L + H L L C K Sbjct: 14 LPQQLKFTTSDSCDRIKDEFQLLQAQYHSLKLECDK 49
>AES_MOUSE (P63002) Amino-terminal enhancer of split (Amino enhancer of split)| (GRG protein) (ESP1 protein) (Grg-5) Length = 197 Score = 33.9 bits (76), Expect = 0.43 Identities = 17/36 (47%), Positives = 20/36 (55%) Frame = -3 Query: 252 LP*QLDFTTQPRCDGIREHGQTLPERCHRLSLWCRK 145 LP QL FTT CD I++ Q L + H L L C K Sbjct: 14 LPQQLKFTTSDSCDRIKDEFQLLQAQYHSLKLECDK 49
>AES_HUMAN (Q08117) Amino-terminal enhancer of split (Amino enhancer of split)| (GRG protein) (ESP1 protein) (Gp130-associated protein GAM) Length = 197 Score = 33.9 bits (76), Expect = 0.43 Identities = 17/36 (47%), Positives = 20/36 (55%) Frame = -3 Query: 252 LP*QLDFTTQPRCDGIREHGQTLPERCHRLSLWCRK 145 LP QL FTT CD I++ Q L + H L L C K Sbjct: 14 LPQQLKFTTSDSCDRIKDEFQLLQAQYHSLKLECDK 49
>ACHC_ACHFU (P35903) Achacin precursor| Length = 531 Score = 33.5 bits (75), Expect = 0.57 Identities = 33/143 (23%), Positives = 63/143 (44%), Gaps = 22/143 (15%) Frame = +1 Query: 163 QTVASFRKGLAMLPNAIA-----SRLGSKVKLSWKLTSITKADNQGYVLGY---ETPEGL 318 + + + G++ LP A+A S + L+ KL S++K DN Y+L + T EG Sbjct: 244 EEILTLTDGMSALPQALADAFLKSSTSHALTLNRKLQSLSKTDNGLYLLEFLETNTHEGY 303 Query: 319 VS-------VQAKSVIMTIPSYVASDI-LRPLSIDAA-DALSKFYYPPVAAVTVSYP--- 462 V A+ VI+ IP + +PL + +A + + P + V +++P Sbjct: 304 TEESNITDLVCARKVILAIPQSALIHLDWKPLRSETVNEAFNAVKFIPTSKVFLTFPTAW 363 Query: 463 --KEAIRKECLIDGELQGFGQLH 525 +A++ + F Q++ Sbjct: 364 WLSDAVKNPAFVVKSTSPFNQMY 386
>AES_XENLA (O42470) Amino-terminal enhancer of split (Amino enhancer of split)| (GRG protein) Length = 197 Score = 33.1 bits (74), Expect = 0.74 Identities = 16/36 (44%), Positives = 20/36 (55%) Frame = -3 Query: 252 LP*QLDFTTQPRCDGIREHGQTLPERCHRLSLWCRK 145 +P QL FTT CD I++ Q L + H L L C K Sbjct: 16 MPQQLKFTTSDSCDRIKDEFQLLQAQYHSLKLECDK 51
>PKN2_COREF (Q8FUI4) Serine/threonine protein kinases drp72 (EC 2.7.11.1)| Length = 520 Score = 32.3 bits (72), Expect = 1.3 Identities = 16/40 (40%), Positives = 21/40 (52%) Frame = +3 Query: 81 WWNHQGNSG*REEPQTAKGSPTSGTKGTDGGIFQEGSGHA 200 W N+QG +G + P T GT GT GG G+G+A Sbjct: 459 WQNNQGGTGNQGNPNTTGNPANPGTPGTTGG---NGTGNA 495
>DPO3B_SYNP7 (P52023) DNA polymerase III beta subunit (EC 2.7.7.7)| Length = 375 Score = 30.8 bits (68), Expect = 3.7 Identities = 22/87 (25%), Positives = 35/87 (40%) Frame = +1 Query: 271 ADNQGYVLGYETPEGLVSVQAKSVIMTIPSYVASDILRPLSIDAADALSKFYYPPVAAVT 450 A G+ L E + A +T+PS D+ R ++I +D Y+ T Sbjct: 171 AATDGHRLAVVKTENAAATPATEFAVTVPSRALRDLERMIAIRGSDEAIALYHDQ--GQT 228 Query: 451 VSYPKEAIRKECLIDGELQGFGQLHPR 531 V + +DG+ +GQL PR Sbjct: 229 VFQWGDQYLTSRTLDGQYPNYGQLIPR 255
>POLG_HCVJL (Q68798) Genome polyprotein [Contains: Core protein p21 (Capsid| protein C) (p21); Core protein p19; Envelope glycoprotein E1 (gp32) (gp35); Envelope glycoprotein E2 (NS1) (gp68) (gp70); p7; Protease NS2-3 (EC 3.4.22.-) (p23); Serine protease/N Length = 3021 Score = 30.4 bits (67), Expect = 4.8 Identities = 18/45 (40%), Positives = 22/45 (48%) Frame = +2 Query: 62 RLGVVLLVEPSRQFRIKGRTPNRQGIPDFRHQRDRRWHLSGRVWP 196 RLGV + S + + +GR RQ IP R Q R W G WP Sbjct: 42 RLGVRATRKTSERSQPRGR---RQPIPKARRQTGRAWGQPGYAWP 83
>PRIA_BUCAP (Q8KA15) Primosomal protein N' (EC 3.6.1.-) (ATP-dependent helicase| priA) (Replication factor Y) Length = 720 Score = 30.0 bits (66), Expect = 6.3 Identities = 26/111 (23%), Positives = 54/111 (48%), Gaps = 3/111 (2%) Frame = +1 Query: 199 LPNAIASRLGSKVKLSWKLTSITKADNQGYVLGYETPEGLVSVQ---AKSVIMTIPSYVA 369 +P+++ +G ++ + ++ I G V+ + + + ++ KS I T Y Sbjct: 20 MPDSMCPIIGGRIVVPFRSKDIV-----GIVISFCNKKNISNLNLAFVKSCIDTESIY-- 72 Query: 370 SDILRPLSIDAADALSKFYYPPVAAVTVSYPKEAIRKECLIDGELQGFGQL 522 SD++ + I LS++YY P+ ++ S + ++K CLID + F L Sbjct: 73 SDVVFSILI----WLSRYYYFPIGSIFFSILPKYLKKICLIDNKNYKFAIL 119
>POLG_HCVVN (O92530) Genome polyprotein [Contains: Core protein p21 (Capsid| protein C) (p21); Core protein p19; Envelope glycoprotein E1 (gp32) (gp35); Envelope glycoprotein E2 (NS1) (gp68) (gp70); p7; Protease NS2-3 (EC 3.4.22.-) (p23); Serine protease/N Length = 3012 Score = 29.6 bits (65), Expect = 8.2 Identities = 18/45 (40%), Positives = 22/45 (48%) Frame = +2 Query: 62 RLGVVLLVEPSRQFRIKGRTPNRQGIPDFRHQRDRRWHLSGRVWP 196 RLGV + S + + +GR RQ IP R Q R W G WP Sbjct: 42 RLGVRATRKTSERSQPRGR---RQPIPKARRQTGRTWAQPGYPWP 83 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.315 0.133 0.379 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 92,787,628 Number of Sequences: 219361 Number of extensions: 1943205 Number of successful extensions: 4834 Number of sequences better than 10.0: 19 Number of HSP's better than 10.0 without gapping: 4687 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4826 length of database: 80,573,946 effective HSP length: 108 effective length of database: 56,882,958 effective search space used: 6200242422 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.5 bits)
