ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name baak4b07
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_450550.1| Oryza sativa (japonica cultivar-group), mRNA 285 4e-74
2dbj|AK068681.1| Oryza sativa (japonica cultivar-group) cDNA clon... 285 4e-74
3gb|AY105352.1| Zea mays PCO102958 mRNA sequence 208 8e-51
4dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 151 2e-33
5dbj|AP005811.3| Oryza sativa (japonica cultivar-group) genomic D... 151 2e-33
6ref|NM_126051.2| Arabidopsis thaliana aldose 1-epimerase AT5G665... 54 3e-04
7gb|BT000037.1| Arabidopsis thaliana apospory-associated protein ... 54 3e-04
8gb|AY120711.1| Arabidopsis thaliana apospory-associated protein ... 54 3e-04
9emb|BX833082.1|CNS0A0E7 Arabidopsis thaliana Full-length cDNA Co... 54 3e-04
10dbj|AB013389.1| Arabidopsis thaliana genomic DNA, chromosome 5, ... 54 3e-04
11gb|BT013054.1| Lycopersicon esculentum clone 114310R, mRNA sequence 46 0.072
12emb|AJ784849.1| Cyanophora paradoxa mRNA for photosystem II 12 k... 46 0.072
13gb|AY523976.1|AY523972S5 Azospirillum brasilense plasmid 90 MDa,... 44 0.28
14gb|AC154125.7| Mus musculus chromosome 18, clone RP23-121M18, co... 44 0.28
15gb|AC121297.20| Mus musculus chromosome 1, clone RP23-326H11, co... 42 1.1
16gb|BC054742.1| Mus musculus zinc finger protein 238, mRNA (cDNA ... 42 1.1
17gb|BC054529.1| Mus musculus zinc finger protein 238, mRNA (cDNA ... 42 1.1
18gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 42 1.1
19gb|AC135792.3| Oryza sativa chromosome 3 BAC OSJNBa0056E06 genom... 42 1.1
20gb|AC078896.23| Mus musculus strain C57BL/6J clone rp23-329d14 m... 42 1.1
21dbj|AK147200.1| Mus musculus adult male brain cDNA, RIKEN full-l... 42 1.1
22gb|AC007844.32| Mus musculus strain 129/Sv ES cell line CJ7 chro... 42 1.1
23dbj|AK088899.1| Mus musculus 2 days neonate thymus thymic cells ... 42 1.1
24gb|BC050909.1| Mus musculus, zinc finger protein 238, clone IMAG... 42 1.1
25gb|AF277399.1|AF277399 Mus musculus cat eye syndrome critical re... 42 1.1
26dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.1
27dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.1
28dbj|AP006878.1| Thermococcus kodakarensis KOD1 DNA, complete genome 42 1.1
29ref|XM_575656.1| PREDICTED: Rattus norvegicus similar to cat eye... 42 1.1
30gb|AC135105.11| Mus musculus strain C57BL/6J clone rp23-354f7, c... 42 1.1
31dbj|AP004735.3| Oryza sativa (japonica cultivar-group) genomic D... 42 1.1
32dbj|AP004734.2| Oryza sativa (japonica cultivar-group) genomic D... 42 1.1
33dbj|AP005577.3| Oryza sativa (japonica cultivar-group) genomic D... 42 1.1
34gb|BC089333.1| Mus musculus zinc finger protein 238, mRNA (cDNA ... 42 1.1
35gb|AF140224.1|AF140224 Mus musculus transcriptional repressor RP... 42 1.1
36emb|CT485798.2| Medicago truncatula chromosome 5 clone mth2-24d7... 42 1.1
37ref|NM_001012330.1| Mus musculus zinc finger protein 238 (Zfp238... 42 1.1
38ref|NM_013915.3| Mus musculus zinc finger protein 238 (Zfp238), ... 42 1.1
39ref|NM_033567.1| Mus musculus cat eye syndrome chromosome region... 42 1.1
40emb|AL513356.8| Mouse DNA sequence from clone RP23-193O17 on chr... 42 1.1
41gb|AC120370.9| Mus musculus chromosome 1, clone RP24-441N3, comp... 42 1.1
42gb|AC005142.2| Arabidopsis thaliana BAC T5L23 from chromosome IV... 40 4.4
43gb|AC120886.2| Oryza sativa (japonica cultivar-group) chromosome... 40 4.4
44emb|AL355365.10| Human DNA sequence from clone RP11-361F15 on ch... 40 4.4
45emb|AL161497.2|ATCHRIV9 Arabidopsis thaliana DNA chromosome 4, c... 40 4.4
46gb|CP000248.1| Novosphingobium aromaticivorans DSM 12444, comple... 40 4.4
47dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 40 4.4
48dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 40 4.4
49gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome 40 4.4
50dbj|AP005585.3| Oryza sativa (japonica cultivar-group) genomic D... 40 4.4
51dbj|AP005758.3| Oryza sativa (japonica cultivar-group) genomic D... 40 4.4
52dbj|AK061275.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 4.4
53dbj|AP005140.4| Homo sapiens genomic DNA, chromosome 11 clone:CM... 40 4.4
54gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 40 4.4
55gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 40 4.4
56emb|AL954159.4|CNS08CCX Oryza sativa chromosome 12, . BAC OSJNBa... 40 4.4 
>ref|XM_450550.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1181

 Score =  285 bits (144), Expect = 4e-74
 Identities = 210/232 (90%)
 Strand = Plus / Plus

                                                                       
Query: 100 gggtggttgccatggccagcgcggggcagaaggtgtacgcgaccggcgtggccgtctccg 159
           ||||||| ||||||||||||| ||||||||||||||||||| |||||||||| |||||||
Sbjct: 124 gggtggtggccatggccagcgtggggcagaaggtgtacgcgcccggcgtggcggtctccg 183

                                                                       
Query: 160 agggcaacggcggcctgcccaagatcagcctcaaatccccgcacgggagtgaggctgaga 219
           ||||||| ||||| ||||| ||||||  |||||| |||||||| |||||||||||||| |
Sbjct: 184 agggcaatggcgggctgccaaagatcgacctcaagtccccgcatgggagtgaggctgaaa 243

                                                                       
Query: 220 tttatctatttggagcatgcgttacgtcttggaaggttcccagtggaaaggacctgctct 279
           |||||||||||||||| ||||| || |||||||| || ||||||||||| ||||| || |
Sbjct: 244 tttatctatttggagcctgcgtaacatcttggaaagtccccagtggaaaagacctcctat 303

                                                               
Query: 280 ttgtcagaccagatgctgtgttcaacggccagaaacccatcagcggtggaat 331
           |||||||||||||||| |||||||||||||||||||||||||| ||||||||
Sbjct: 304 ttgtcagaccagatgcggtgttcaacggccagaaacccatcagtggtggaat 355



 Score = 46.1 bits (23), Expect = 0.072
 Identities = 32/35 (91%)
 Strand = Plus / Plus

                                             
Query: 12 gcagaaatggcggcttcctgcacgctcaccgtccc 46
          ||||||||||||||||| ||| |||||||| ||||
Sbjct: 24 gcagaaatggcggcttcttgcgcgctcaccctccc 58
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>dbj|AK068681.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013160H24, full
           insert sequence
          Length = 1181

 Score =  285 bits (144), Expect = 4e-74
 Identities = 210/232 (90%)
 Strand = Plus / Plus

                                                                       
Query: 100 gggtggttgccatggccagcgcggggcagaaggtgtacgcgaccggcgtggccgtctccg 159
           ||||||| ||||||||||||| ||||||||||||||||||| |||||||||| |||||||
Sbjct: 124 gggtggtggccatggccagcgtggggcagaaggtgtacgcgcccggcgtggcggtctccg 183

                                                                       
Query: 160 agggcaacggcggcctgcccaagatcagcctcaaatccccgcacgggagtgaggctgaga 219
           ||||||| ||||| ||||| ||||||  |||||| |||||||| |||||||||||||| |
Sbjct: 184 agggcaatggcgggctgccaaagatcgacctcaagtccccgcatgggagtgaggctgaaa 243

                                                                       
Query: 220 tttatctatttggagcatgcgttacgtcttggaaggttcccagtggaaaggacctgctct 279
           |||||||||||||||| ||||| || |||||||| || ||||||||||| ||||| || |
Sbjct: 244 tttatctatttggagcctgcgtaacatcttggaaagtccccagtggaaaagacctcctat 303

                                                               
Query: 280 ttgtcagaccagatgctgtgttcaacggccagaaacccatcagcggtggaat 331
           |||||||||||||||| |||||||||||||||||||||||||| ||||||||
Sbjct: 304 ttgtcagaccagatgcggtgttcaacggccagaaacccatcagtggtggaat 355



 Score = 46.1 bits (23), Expect = 0.072
 Identities = 32/35 (91%)
 Strand = Plus / Plus

                                             
Query: 12 gcagaaatggcggcttcctgcacgctcaccgtccc 46
          ||||||||||||||||| ||| |||||||| ||||
Sbjct: 24 gcagaaatggcggcttcttgcgcgctcaccctccc 58
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>gb|AY105352.1| Zea mays PCO102958 mRNA sequence
          Length = 1216

 Score =  208 bits (105), Expect = 8e-51
 Identities = 201/233 (86%)
 Strand = Plus / Plus

                                                                       
Query: 102 gtggttgccatggccagcgcggggcagaaggtgtacgcgaccggcgtggccgtctccgag 161
           ||||| |||||||||||||  |||||||||||||| ||| |||| ||||| || || |||
Sbjct: 206 gtggtggccatggccagcgttgggcagaaggtgtatgcgcccggtgtggcggtgtcggag 265

                                                                       
Query: 162 ggcaacggcggcctgcccaagatcagcctcaaatccccgcacgggagtgaggctgagatt 221
           ||||| ||||| ||||| || |||  ||||||||||||||||||||| ||||||||||||
Sbjct: 266 ggcaatggcgggctgccgaaaatcgacctcaaatccccgcacgggagcgaggctgagatt 325

                                                                       
Query: 222 tatctatttggagcatgcgttacgtcttggaaggttcccagtggaaaggacctgctcttt 281
           ||||| |||||||| || ||||| ||||  || || || | ||| |||||||||||||||
Sbjct: 326 tatctgtttggagcgtgtgttacttctttcaaagtccctaatggcaaggacctgctcttt 385

                                                                
Query: 282 gtcagaccagatgctgtgttcaacggccagaaacccatcagcggtggaattcc 334
           ||  |||||||||||||||| || || ||||||||||||||||||||||||||
Sbjct: 386 gttcgaccagatgctgtgtttaatggacagaaacccatcagcggtggaattcc 438
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>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
               sequence
          Length = 22696651

 Score =  151 bits (76), Expect = 2e-33
 Identities = 106/116 (91%)
 Strand = Plus / Minus

                                                                           
Query: 207     agtgaggctgagatttatctatttggagcatgcgttacgtcttggaaggttcccagtgga 266
               ||||||||||| ||||||||||||||||| ||||| || |||||||| || |||||||||
Sbjct: 9604991 agtgaggctgaaatttatctatttggagcctgcgtaacatcttggaaagtccccagtgga 9604932

                                                                       
Query: 267     aaggacctgctctttgtcagaccagatgctgtgttcaacggccagaaacccatcag 322
               || ||||| || ||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 9604931 aaagacctcctatttgtcagaccagatgcggtgttcaacggccagaaacccatcag 9604876



 Score =  129 bits (65), Expect = 6e-27
 Identities = 98/109 (89%)
 Strand = Plus / Minus

                                                                           
Query: 100     gggtggttgccatggccagcgcggggcagaaggtgtacgcgaccggcgtggccgtctccg 159
               ||||||| ||||||||||||| ||||||||||||||||||| |||||||||| |||||||
Sbjct: 9606008 gggtggtggccatggccagcgtggggcagaaggtgtacgcgcccggcgtggcggtctccg 9605949

                                                                
Query: 160     agggcaacggcggcctgcccaagatcagcctcaaatccccgcacgggag 208
               ||||||| ||||| ||||| ||||||  |||||| |||||||| |||||
Sbjct: 9605948 agggcaatggcgggctgccaaagatcgacctcaagtccccgcatgggag 9605900



 Score = 46.1 bits (23), Expect = 0.072
 Identities = 32/35 (91%)
 Strand = Plus / Minus

                                                  
Query: 12      gcagaaatggcggcttcctgcacgctcaccgtccc 46
               ||||||||||||||||| ||| |||||||| ||||
Sbjct: 9606226 gcagaaatggcggcttcttgcgcgctcaccctccc 9606192



 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 51       cccttcgccgccgcctcctcc 71
                |||||||||||||||||||||
Sbjct: 13821419 cccttcgccgccgcctcctcc 13821399



 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 51      cccttcgccgccgcctcctc 70
               ||||||||||||||||||||
Sbjct: 2316711 cccttcgccgccgcctcctc 2316692
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>dbj|AP005811.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC
             clone:P0706E03
          Length = 188028

 Score =  151 bits (76), Expect = 2e-33
 Identities = 106/116 (91%)
 Strand = Plus / Minus

                                                                         
Query: 207   agtgaggctgagatttatctatttggagcatgcgttacgtcttggaaggttcccagtgga 266
             ||||||||||| ||||||||||||||||| ||||| || |||||||| || |||||||||
Sbjct: 45088 agtgaggctgaaatttatctatttggagcctgcgtaacatcttggaaagtccccagtgga 45029

                                                                     
Query: 267   aaggacctgctctttgtcagaccagatgctgtgttcaacggccagaaacccatcag 322
             || ||||| || ||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 45028 aaagacctcctatttgtcagaccagatgcggtgttcaacggccagaaacccatcag 44973



 Score =  129 bits (65), Expect = 6e-27
 Identities = 98/109 (89%)
 Strand = Plus / Minus

                                                                         
Query: 100   gggtggttgccatggccagcgcggggcagaaggtgtacgcgaccggcgtggccgtctccg 159
             ||||||| ||||||||||||| ||||||||||||||||||| |||||||||| |||||||
Sbjct: 46105 gggtggtggccatggccagcgtggggcagaaggtgtacgcgcccggcgtggcggtctccg 46046

                                                              
Query: 160   agggcaacggcggcctgcccaagatcagcctcaaatccccgcacgggag 208
             ||||||| ||||| ||||| ||||||  |||||| |||||||| |||||
Sbjct: 46045 agggcaatggcgggctgccaaagatcgacctcaagtccccgcatgggag 45997



 Score = 46.1 bits (23), Expect = 0.072
 Identities = 32/35 (91%)
 Strand = Plus / Minus

                                                
Query: 12    gcagaaatggcggcttcctgcacgctcaccgtccc 46
             ||||||||||||||||| ||| |||||||| ||||
Sbjct: 46323 gcagaaatggcggcttcttgcgcgctcaccctccc 46289
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>ref|NM_126051.2| Arabidopsis thaliana aldose 1-epimerase AT5G66530 mRNA, complete
           cds
          Length = 1099

 Score = 54.0 bits (27), Expect = 3e-04
 Identities = 78/95 (82%)
 Strand = Plus / Plus

                                                                       
Query: 210 gaggctgagatttatctatttggagcatgcgttacgtcttggaaggttcccagtggaaag 269
           ||||||||||| ||||| || ||||  ||| |||| |||||||| ||| | || || || 
Sbjct: 270 gaggctgagatatatctcttcggaggctgcattacttcttggaaagttgcgagcggtaaa 329

                                              
Query: 270 gacctgctctttgtcagaccagatgctgtgttcaa 304
           || || || |||||||||||||||||||| |||||
Sbjct: 330 gatcttctttttgtcagaccagatgctgtcttcaa 364
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>gb|BT000037.1| Arabidopsis thaliana apospory-associated protein C-like protein
           (At5g66530) mRNA, complete cds
          Length = 967

 Score = 54.0 bits (27), Expect = 3e-04
 Identities = 78/95 (82%)
 Strand = Plus / Plus

                                                                       
Query: 210 gaggctgagatttatctatttggagcatgcgttacgtcttggaaggttcccagtggaaag 269
           ||||||||||| ||||| || ||||  ||| |||| |||||||| ||| | || || || 
Sbjct: 169 gaggctgagatatatctcttcggaggctgcattacttcttggaaagttgcgagcggtaaa 228

                                              
Query: 270 gacctgctctttgtcagaccagatgctgtgttcaa 304
           || || || |||||||||||||||||||| |||||
Sbjct: 229 gatcttctttttgtcagaccagatgctgtcttcaa 263
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>gb|AY120711.1| Arabidopsis thaliana apospory-associated protein C-like protein
           (At5g66530) mRNA, complete cds
          Length = 1100

 Score = 54.0 bits (27), Expect = 3e-04
 Identities = 78/95 (82%)
 Strand = Plus / Plus

                                                                       
Query: 210 gaggctgagatttatctatttggagcatgcgttacgtcttggaaggttcccagtggaaag 269
           ||||||||||| ||||| || ||||  ||| |||| |||||||| ||| | || || || 
Sbjct: 270 gaggctgagatatatctcttcggaggctgcattacttcttggaaagttgcgagcggtaaa 329

                                              
Query: 270 gacctgctctttgtcagaccagatgctgtgttcaa 304
           || || || |||||||||||||||||||| |||||
Sbjct: 330 gatcttctttttgtcagaccagatgctgtcttcaa 364
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>emb|BX833082.1|CNS0A0E7 Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTSIL33ZE02 of Silique of strain col-0 of Arabidopsis
           thaliana (thale cress)
          Length = 1092

 Score = 54.0 bits (27), Expect = 3e-04
 Identities = 78/95 (82%)
 Strand = Plus / Plus

                                                                       
Query: 210 gaggctgagatttatctatttggagcatgcgttacgtcttggaaggttcccagtggaaag 269
           ||||||||||| ||||| || ||||  ||| |||| |||||||| ||| | || || || 
Sbjct: 268 gaggctgagatatatctcttcggaggctgcattacttcttggaaagttgcgagcggtaaa 327

                                              
Query: 270 gacctgctctttgtcagaccagatgctgtgttcaa 304
           || || || |||||||||||||||||||| |||||
Sbjct: 328 gatcttctttttgtcagaccagatgctgtcttcaa 362
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>dbj|AB013389.1| Arabidopsis thaliana genomic DNA, chromosome 5, TAC clone:K1F13
          Length = 83511

 Score = 54.0 bits (27), Expect = 3e-04
 Identities = 78/95 (82%)
 Strand = Plus / Minus

                                                                         
Query: 210   gaggctgagatttatctatttggagcatgcgttacgtcttggaaggttcccagtggaaag 269
             ||||||||||| ||||| || ||||  ||| |||| |||||||| ||| | || || || 
Sbjct: 44135 gaggctgagatatatctcttcggaggctgcattacttcttggaaagttgcgagcggtaaa 44076

                                                
Query: 270   gacctgctctttgtcagaccagatgctgtgttcaa 304
             || || || |||||||||||||||||||| |||||
Sbjct: 44075 gatcttctttttgtcagaccagatgctgtcttcaa 44041
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>gb|BT013054.1| Lycopersicon esculentum clone 114310R, mRNA sequence
          Length = 1284

 Score = 46.1 bits (23), Expect = 0.072
 Identities = 100/125 (80%), Gaps = 3/125 (2%)
 Strand = Plus / Plus

                                                                       
Query: 207 agtgaggctgagatttatctatttggagcatgcgttacgtcttggaaggttcccagtgga 266
           |||||||||||| | |||||||||||||| || || || |||||||| ||   ||||   
Sbjct: 230 agtgaggctgagctatatctatttggagcttgtgtcacatcttggaaagtagacagt--- 286

                                                                       
Query: 267 aaggacctgctctttgtcagaccagatgctgtgttcaacggccagaaacccatcagcggt 326
           || || || || |||||  ||||||||||||| ||||| || |||||||| ||||| || 
Sbjct: 287 aaagatctactttttgttcgaccagatgctgtattcaatggtcagaaaccaatcagtgga 346

                
Query: 327 ggaat 331
           |||||
Sbjct: 347 ggaat 351
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>emb|AJ784849.1| Cyanophora paradoxa mRNA for photosystem II 12 kDa extrinsic
          protein precursor (psbU gene)
          Length = 702

 Score = 46.1 bits (23), Expect = 0.072
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 1  ttcggcacgaggcagaaatggcg 23
          |||||||||||||||||||||||
Sbjct: 4  ttcggcacgaggcagaaatggcg 26
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>gb|AY523976.1|AY523972S5 Azospirillum brasilense plasmid 90 MDa, partial sequence
          Length = 32896

 Score = 44.1 bits (22), Expect = 0.28
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                           
Query: 149   ggccgtctccgagggcaacggcggcctgcc 178
             |||||||  |||||||||||||||||||||
Sbjct: 23689 ggccgtcgtcgagggcaacggcggcctgcc 23718
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>gb|AC154125.7| Mus musculus chromosome 18, clone RP23-121M18, complete sequence
          Length = 207258

 Score = 44.1 bits (22), Expect = 0.28
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                        
Query: 9      gaggcagaaatggcggcttcctgcac 34
              |||| |||||||||||||||||||||
Sbjct: 117440 gagggagaaatggcggcttcctgcac 117415
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>gb|AC121297.20| Mus musculus chromosome 1, clone RP23-326H11, complete sequence
          Length = 207496

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 111  atggccagcgcggggcagaag 131
            |||||||||||||||||||||
Sbjct: 9653 atggccagcgcggggcagaag 9673
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>gb|BC054742.1| Mus musculus zinc finger protein 238, mRNA (cDNA clone MGC:64779
            IMAGE:5721393), complete cds
          Length = 3963

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 111  atggccagcgcggggcagaag 131
            |||||||||||||||||||||
Sbjct: 3283 atggccagcgcggggcagaag 3303
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>gb|BC054529.1| Mus musculus zinc finger protein 238, mRNA (cDNA clone MGC:62253
            IMAGE:5721393), complete cds
          Length = 3963

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 111  atggccagcgcggggcagaag 131
            |||||||||||||||||||||
Sbjct: 3283 atggccagcgcggggcagaag 3303
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 54       ttcgccgccgcctcctccact 74
                |||||||||||||||||||||
Sbjct: 25878355 ttcgccgccgcctcctccact 25878335
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>gb|AC135792.3| Oryza sativa chromosome 3 BAC OSJNBa0056E06 genomic sequence, complete
              sequence
          Length = 140720

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 54     ttcgccgccgcctcctccact 74
              |||||||||||||||||||||
Sbjct: 129565 ttcgccgccgcctcctccact 129585
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>gb|AC078896.23| Mus musculus strain C57BL/6J clone rp23-329d14 map 6, complete sequence
          Length = 170323

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 56     cgccgccgcctcctccacttc 76
              |||||||||||||||||||||
Sbjct: 110183 cgccgccgcctcctccacttc 110163
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>dbj|AK147200.1| Mus musculus adult male brain cDNA, RIKEN full-length enriched
            library, clone:L630098A17 product:zinc finger protein
            238, full insert sequence
          Length = 3789

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 111  atggccagcgcggggcagaag 131
            |||||||||||||||||||||
Sbjct: 3132 atggccagcgcggggcagaag 3152
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>gb|AC007844.32| Mus musculus strain 129/Sv ES cell line CJ7 chromosome 6 clone
             ct7-541l22, complete sequence
          Length = 152316

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 56    cgccgccgcctcctccacttc 76
             |||||||||||||||||||||
Sbjct: 26987 cgccgccgcctcctccacttc 26967
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>dbj|AK088899.1| Mus musculus 2 days neonate thymus thymic cells cDNA, RIKEN
            full-length enriched library, clone:E430030L07
            product:weakly similar to zinc finger protein ZNF65
            (C2-H2 zinc finger motif) (fragment) [Homo sapiens], full
            insert sequence
          Length = 2379

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 111  atggccagcgcggggcagaag 131
            |||||||||||||||||||||
Sbjct: 1721 atggccagcgcggggcagaag 1741
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>gb|BC050909.1| Mus musculus, zinc finger protein 238, clone IMAGE:6417039, mRNA,
            partial cds
          Length = 3881

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 111  atggccagcgcggggcagaag 131
            |||||||||||||||||||||
Sbjct: 3202 atggccagcgcggggcagaag 3222
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>gb|AF277399.1|AF277399 Mus musculus cat eye syndrome critical region 6 (Cecr6) mRNA,
           complete cds
          Length = 4885

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 56  cgccgccgcctcctccacttc 76
           |||||||||||||||||||||
Sbjct: 389 cgccgccgcctcctccacttc 409
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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 52       ccttcgccgccgcctcctcca 72
                |||||||||||||||||||||
Sbjct: 15914686 ccttcgccgccgcctcctcca 15914706
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 54       ttcgccgccgcctcctccact 74
                |||||||||||||||||||||
Sbjct: 25969664 ttcgccgccgcctcctccact 25969644
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>dbj|AP006878.1| Thermococcus kodakarensis KOD1 DNA, complete genome
          Length = 2088737

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 100     gggtggttgccatggccagcg 120
               |||||||||||||||||||||
Sbjct: 1556094 gggtggttgccatggccagcg 1556114
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>ref|XM_575656.1| PREDICTED: Rattus norvegicus similar to cat eye syndrome critical
           region 6 (LOC500307), mRNA
          Length = 2930

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 56  cgccgccgcctcctccacttc 76
           |||||||||||||||||||||
Sbjct: 759 cgccgccgcctcctccacttc 779
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>gb|AC135105.11| Mus musculus strain C57BL/6J clone rp23-354f7, complete sequence
          Length = 209282

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 56    cgccgccgcctcctccacttc 76
             |||||||||||||||||||||
Sbjct: 22726 cgccgccgcctcctccacttc 22706
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>dbj|AP004735.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
             clone:OSJNBa0031P18
          Length = 156535

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 52    ccttcgccgccgcctcctcca 72
             |||||||||||||||||||||
Sbjct: 48135 ccttcgccgccgcctcctcca 48155
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>dbj|AP004734.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
              clone:OSJNBa0026P23
          Length = 180188

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 52     ccttcgccgccgcctcctcca 72
              |||||||||||||||||||||
Sbjct: 127689 ccttcgccgccgcctcctcca 127709
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>dbj|AP005577.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
             clone:OJ1655_B12
          Length = 132736

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 51    cccttcgccgccgcctcctcc 71
             |||||||||||||||||||||
Sbjct: 70903 cccttcgccgccgcctcctcc 70883
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>gb|BC089333.1| Mus musculus zinc finger protein 238, mRNA (cDNA clone
            IMAGE:30532454)
          Length = 3750

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 111  atggccagcgcggggcagaag 131
            |||||||||||||||||||||
Sbjct: 3071 atggccagcgcggggcagaag 3091
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>gb|AF140224.1|AF140224 Mus musculus transcriptional repressor RP58 (rp58) mRNA, complete cds
          Length = 4993

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 111  atggccagcgcggggcagaag 131
            |||||||||||||||||||||
Sbjct: 4283 atggccagcgcggggcagaag 4303
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>emb|CT485798.2| Medicago truncatula chromosome 5 clone mth2-24d7, COMPLETE SEQUENCE
          Length = 115553

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 63/77 (81%)
 Strand = Plus / Minus

                                                                         
Query: 207   agtgaggctgagatttatctatttggagcatgcgttacgtcttggaaggttcccagtgga 266
             |||||||||||||| ||| | ||||| |  ||| |||| |||||||| ||||||| ||| 
Sbjct: 47155 agtgaggctgagatatatttgtttggtggttgcattacttcttggaaagttcccaatggc 47096

                              
Query: 267   aaggacctgctctttgt 283
             || ||||| || |||||
Sbjct: 47095 aaagaccttctttttgt 47079
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>ref|NM_001012330.1| Mus musculus zinc finger protein 238 (Zfp238), transcript variant 1,
            mRNA
          Length = 3848

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 111  atggccagcgcggggcagaag 131
            |||||||||||||||||||||
Sbjct: 3175 atggccagcgcggggcagaag 3195
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>ref|NM_013915.3| Mus musculus zinc finger protein 238 (Zfp238), transcript variant 2,
            mRNA
          Length = 4954

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 111  atggccagcgcggggcagaag 131
            |||||||||||||||||||||
Sbjct: 4281 atggccagcgcggggcagaag 4301
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>ref|NM_033567.1| Mus musculus cat eye syndrome chromosome region, candidate 6
           homolog (human) (Cecr6), mRNA
          Length = 4885

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 56  cgccgccgcctcctccacttc 76
           |||||||||||||||||||||
Sbjct: 389 cgccgccgcctcctccacttc 409
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>emb|AL513356.8| Mouse DNA sequence from clone RP23-193O17 on chromosome X, complete
              sequence
          Length = 216238

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 111    atggccagcgcggggcagaag 131
              |||||||||||||||||||||
Sbjct: 209687 atggccagcgcggggcagaag 209707
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>gb|AC120370.9| Mus musculus chromosome 1, clone RP24-441N3, complete sequence
          Length = 163929

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 111   atggccagcgcggggcagaag 131
             |||||||||||||||||||||
Sbjct: 30653 atggccagcgcggggcagaag 30633
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>gb|AC005142.2| Arabidopsis thaliana BAC T5L23 from chromosome IV, near 19 cM, complete
             sequence
          Length = 116448

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 215   tgagatttatctatttggag 234
             ||||||||||||||||||||
Sbjct: 92957 tgagatttatctatttggag 92938
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>gb|AC120886.2| Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone
             OSJNBa0068E24, complete sequence
          Length = 141492

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 55    tcgccgccgcctcctccact 74
             ||||||||||||||||||||
Sbjct: 84138 tcgccgccgcctcctccact 84157
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>emb|AL355365.10| Human DNA sequence from clone RP11-361F15 on chromosome 6 Contains the
             3' end of the gene for tomosyn (LOC134957) (contains
             FLJ30922), a putative novel gene and a Yes-associated
             protein 1, 65kD (YAP1) pseudogene, complete sequence
          Length = 162750

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 219   atttatctatttggagcatg 238
             ||||||||||||||||||||
Sbjct: 24967 atttatctatttggagcatg 24986
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>emb|AL161497.2|ATCHRIV9 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 9
          Length = 159629

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 215    tgagatttatctatttggag 234
              ||||||||||||||||||||
Sbjct: 114235 tgagatttatctatttggag 114216
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>gb|CP000248.1| Novosphingobium aromaticivorans DSM 12444, complete genome
          Length = 3561584

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 139     cgaccggcgtggccgtctccgagg 162
               |||||||||||||||||| |||||
Sbjct: 1199682 cgaccggcgtggccgtctgcgagg 1199705
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>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
                sequence
          Length = 27566993

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                        
Query: 50       ccccttcgccgccgcctcctccac 73
                ||||||||||||||||||| ||||
Sbjct: 14677029 ccccttcgccgccgcctccgccac 14677006
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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
                sequence
          Length = 28386948

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 55       tcgccgccgcctcctccact 74
                ||||||||||||||||||||
Sbjct: 22931631 tcgccgccgcctcctccact 22931650
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>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome
          Length = 5013479

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 49      gccccttcgccgccgcctcc 68
               ||||||||||||||||||||
Sbjct: 1356103 gccccttcgccgccgcctcc 1356084
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>dbj|AP005585.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC
              clone:P0448B11
          Length = 179858

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 51     cccttcgccgccgcctcctc 70
              ||||||||||||||||||||
Sbjct: 178549 cccttcgccgccgcctcctc 178530
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>dbj|AP005758.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC
             clone:P0433B06
          Length = 126258

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 51    cccttcgccgccgcctcctc 70
             ||||||||||||||||||||
Sbjct: 55750 cccttcgccgccgcctcctc 55731
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>dbj|AK061275.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-212-E07,
          full insert sequence
          Length = 1201

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 51 cccttcgccgccgcctcctc 70
          ||||||||||||||||||||
Sbjct: 49 cccttcgccgccgcctcctc 68
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>dbj|AP005140.4| Homo sapiens genomic DNA, chromosome 11 clone:CMB9-65A1, complete
             sequence
          Length = 112601

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 260   cagtggaaaggacctgctct 279
             ||||||||||||||||||||
Sbjct: 69382 cagtggaaaggacctgctct 69363
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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 55       tcgccgccgcctcctccact 74
                ||||||||||||||||||||
Sbjct: 23241541 tcgccgccgcctcctccact 23241560
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>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                        
Query: 50       ccccttcgccgccgcctcctccac 73
                ||||||||||||||||||| ||||
Sbjct: 14631312 ccccttcgccgccgcctccgccac 14631289
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>emb|AL954159.4|CNS08CCX Oryza sativa chromosome 12, . BAC OSJNBa0057C04 of library OSJNBa from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 131673

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 50    ccccttcgccgccgcctcctccac 73
             ||||||||||||||||||| ||||
Sbjct: 67056 ccccttcgccgccgcctccgccac 67079


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,576,261
Number of Sequences: 3902068
Number of extensions: 2576261
Number of successful extensions: 68302
Number of sequences better than 10.0: 56
Number of HSP's better than 10.0 without gapping: 58
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 67265
Number of HSP's gapped (non-prelim): 1037
length of query: 334
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 312
effective length of database: 17,147,199,772
effective search space: 5349926328864
effective search space used: 5349926328864
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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