ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbasdp23 |
|---|---|
| Clone Library Name | barley_pub |
>MNB1B_MAIZE (P27347) DNA-binding protein MNB1B (HMG1-like protein)| Length = 157 Score = 60.5 bits (145), Expect = 5e-09 Identities = 33/85 (38%), Positives = 47/85 (55%), Gaps = 7/85 (8%) Frame = -1 Query: 605 SKANGDAAFKASGKSKTATG--GVA-----KPKRAPTPFFVFLAEFRPQYMEKHPXXXXX 447 +KA+ A K+ G K A G G A KPKRAP+ FFVF+ EFR ++ EK+P Sbjct: 10 AKADAKLAVKSKGAEKPAKGRKGKAGKDPNKPKRAPSAFFVFMEEFRKEFKEKNPKNKSV 69 Query: 446 XXXXXXXXEKWRSMSDEEKAKYGGK 372 ++W+S+S+ +KA Y K Sbjct: 70 AAVGKAAGDRWKSLSESDKAPYVAK 94
>HMGL_WHEAT (P40621) HMG1/2-like protein| Length = 161 Score = 60.1 bits (144), Expect = 6e-09 Identities = 32/86 (37%), Positives = 45/86 (52%), Gaps = 8/86 (9%) Frame = -1 Query: 605 SKANGDAAFKASGKSKTATGGVA--------KPKRAPTPFFVFLAEFRPQYMEKHPXXXX 450 +KA+ A K+ G K A G KPKRAP+ FFVF+ EFR ++ +K+P Sbjct: 10 AKADAKLAVKSKGAEKPAAKGKKGKAGKDPNKPKRAPSAFFVFMGEFREEFKQKNPKNKS 69 Query: 449 XXXXXXXXXEKWRSMSDEEKAKYGGK 372 E+W+S+S+ EKA Y K Sbjct: 70 VAAVGKAAGERWKSLSESEKAPYVAK 95
>HMGL_SOYBN (P26585) HMG1/2-like protein (SB11 protein)| Length = 152 Score = 58.2 bits (139), Expect = 2e-08 Identities = 31/80 (38%), Positives = 40/80 (50%) Frame = -1 Query: 611 MRSKANGDAAFKASGKSKTATGGVAKPKRAPTPFFVFLAEFRPQYMEKHPXXXXXXXXXX 432 + K A K +GK K A KPKR P+ FFVF+ EFR + ++HP Sbjct: 19 VNKKGAATKARKPAGKGKAAKDP-NKPKRPPSAFFVFMEEFRKVFNKEHPENKAVSAVGK 77 Query: 431 XXXEKWRSMSDEEKAKYGGK 372 KW++MSD EKA Y K Sbjct: 78 AAGAKWKTMSDAEKAPYVAK 97
>HMGL_VICFA (P40620) HMG1/2-like protein| Length = 149 Score = 56.6 bits (135), Expect = 7e-08 Identities = 31/76 (40%), Positives = 39/76 (51%), Gaps = 4/76 (5%) Frame = -1 Query: 596 NGDAAFKASGKSKTATGGVAK----PKRAPTPFFVFLAEFRPQYMEKHPXXXXXXXXXXX 429 N A G K A G K PKR P+ FFVF+A+FR QY + HP Sbjct: 20 NKKGAAATKGGKKPAKGKEPKDPNKPKRPPSAFFVFMADFREQYKKDHPNNKSVAAVGKA 79 Query: 428 XXEKWRSMSDEEKAKY 381 E+W+S+S+EEKA Y Sbjct: 80 CGEEWKSLSEEEKAPY 95
>HMGL_IPONI (P40619) HMG1/2-like protein| Length = 144 Score = 52.4 bits (124), Expect = 1e-06 Identities = 25/65 (38%), Positives = 34/65 (52%) Frame = -1 Query: 566 KSKTATGGVAKPKRAPTPFFVFLAEFRPQYMEKHPXXXXXXXXXXXXXEKWRSMSDEEKA 387 K+K A KPKR P+ FFVF+ +FR Y EKHP +KW+ ++ EKA Sbjct: 25 KTKKAVKDPNKPKRPPSAFFVFMEDFRKTYKEKHPNNKSVAVVGKAGGDKWKQLTAAEKA 84 Query: 386 KYGGK 372 + K Sbjct: 85 PFISK 89
>HMGB3_CHICK (P40618) High mobility group protein B3 (High mobility group| protein 4) (HMG-4) (High mobility group protein 2a) (HMG-2a) Length = 201 Score = 40.8 bits (94), Expect = 0.004 Identities = 29/84 (34%), Positives = 37/84 (44%), Gaps = 5/84 (5%) Frame = -1 Query: 602 KANGDAAFKASGKSKTATGGVAK-----PKRAPTPFFVFLAEFRPQYMEKHPXXXXXXXX 438 K D K G +K GG K PKR P+ FF+F +EFRP+ +P Sbjct: 67 KVRYDREMKDYGPAK---GGKKKKDPNAPKRPPSAFFLFCSEFRPKIKSTNP-GISIGDV 122 Query: 437 XXXXXEKWRSMSDEEKAKYGGKKA 366 E W ++SD EK Y K A Sbjct: 123 AKKLGEMWNNLSDGEKQPYNNKAA 146 Score = 29.6 bits (65), Expect = 8.8 Identities = 17/59 (28%), Positives = 29/59 (49%), Gaps = 1/59 (1%) Frame = -1 Query: 554 ATGGVAKPKRAPTPFFVFLAEFRPQYMEKHPXXXXXXXXXXXX-XEKWRSMSDEEKAKY 381 A G KPK + + F+ R ++ +K+P E+W++MS +EKAK+ Sbjct: 1 AKGDPKKPKGKMSAYAFFVQTCREEHKKKNPEVPVNFAEFSKKCSERWKTMSSKEKAKF 59
>HMGB1_CHICK (P36194) High mobility group protein B1 (High mobility group| protein 1) (HMG-1) Length = 200 Score = 40.4 bits (93), Expect = 0.005 Identities = 29/84 (34%), Positives = 37/84 (44%), Gaps = 5/84 (5%) Frame = -1 Query: 602 KANGDAAFKASGKSKTATGGVAK-----PKRAPTPFFVFLAEFRPQYMEKHPXXXXXXXX 438 K D K G +K GG K PKR P+ FF+F +EFRP+ +P Sbjct: 66 KVRYDREMKDYGPAK---GGKKKKDPNAPKRPPSGFFLFCSEFRPKIKSTNP-GISIGDV 121 Query: 437 XXXXXEKWRSMSDEEKAKYGGKKA 366 E W ++SD EK Y K A Sbjct: 122 AKKLGEMWNNLSDGEKQPYNNKAA 145
>HMGB3_MOUSE (O54879) High mobility group protein B3 (High mobility group| protein 4) (HMG-4) (High mobility group protein 2a) (HMG-2a) Length = 199 Score = 39.3 bits (90), Expect = 0.011 Identities = 29/84 (34%), Positives = 37/84 (44%), Gaps = 5/84 (5%) Frame = -1 Query: 602 KANGDAAFKASGKSKTATGGVAK-----PKRAPTPFFVFLAEFRPQYMEKHPXXXXXXXX 438 K D K G +K GG K PKR P+ FF+F +EFRP+ +P Sbjct: 67 KVRYDREMKDYGPAK---GGKKKKDPNAPKRPPSGFFLFCSEFRPKIKSTNP-GISIGDV 122 Query: 437 XXXXXEKWRSMSDEEKAKYGGKKA 366 E W ++SD EK Y K A Sbjct: 123 AKKLGEMWNNLSDNEKQPYVTKAA 146
>UBF1_RAT (P25977) Nucleolar transcription factor 1 (Upstream-binding factor| 1) (UBF-1) Length = 764 Score = 38.1 bits (87), Expect = 0.025 Identities = 20/61 (32%), Positives = 29/61 (47%) Frame = -1 Query: 548 GGVAKPKRAPTPFFVFLAEFRPQYMEKHPXXXXXXXXXXXXXEKWRSMSDEEKAKYGGKK 369 GG KPKR + F+F E R Q E+ P W +S+++KAKY ++ Sbjct: 402 GGSEKPKRPVSAMFIFSEEKRRQLQEERP-ELSESELTRLLARMWNDLSEKKKAKYKARE 460 Query: 368 A 366 A Sbjct: 461 A 461 Score = 30.8 bits (68), Expect = 4.0 Identities = 15/51 (29%), Positives = 26/51 (50%) Frame = -1 Query: 533 PKRAPTPFFVFLAEFRPQYMEKHPXXXXXXXXXXXXXEKWRSMSDEEKAKY 381 PK+ TP+F F E R +Y + HP +K++ + +++K KY Sbjct: 112 PKKPLTPYFRFFMEKRAKYAKLHP-EMSNLDLTKILSKKYKELPEKKKMKY 161
>UBF1_HUMAN (P17480) Nucleolar transcription factor 1 (Upstream-binding factor| 1) (UBF-1) (Autoantigen NOR-90) Length = 764 Score = 38.1 bits (87), Expect = 0.025 Identities = 20/61 (32%), Positives = 29/61 (47%) Frame = -1 Query: 548 GGVAKPKRAPTPFFVFLAEFRPQYMEKHPXXXXXXXXXXXXXEKWRSMSDEEKAKYGGKK 369 GG KPKR + F+F E R Q E+ P W +S+++KAKY ++ Sbjct: 402 GGSEKPKRPVSAMFIFSEEKRRQLQEERP-ELSESELTRLLARMWNDLSEKKKAKYKARE 460 Query: 368 A 366 A Sbjct: 461 A 461 Score = 30.8 bits (68), Expect = 4.0 Identities = 15/51 (29%), Positives = 26/51 (50%) Frame = -1 Query: 533 PKRAPTPFFVFLAEFRPQYMEKHPXXXXXXXXXXXXXEKWRSMSDEEKAKY 381 PK+ TP+F F E R +Y + HP +K++ + +++K KY Sbjct: 112 PKKPLTPYFRFFMEKRAKYAKLHP-EMSNLDLTKILSKKYKELPEKKKMKY 161
>HMGB3_HUMAN (O15347) High mobility group protein B3 (High mobility group| protein 4) (HMG-4) (High mobility group protein 2a) (HMG-2a) Length = 199 Score = 37.7 bits (86), Expect = 0.032 Identities = 28/84 (33%), Positives = 37/84 (44%), Gaps = 5/84 (5%) Frame = -1 Query: 602 KANGDAAFKASGKSKTATGGVAK-----PKRAPTPFFVFLAEFRPQYMEKHPXXXXXXXX 438 K D K G +K GG K PKR P+ FF+F +EFRP+ +P Sbjct: 67 KVRYDREMKDYGPAK---GGKKKKDPNAPKRPPSGFFLFCSEFRPKIKSTNP-GISIGDV 122 Query: 437 XXXXXEKWRSMSDEEKAKYGGKKA 366 E W +++D EK Y K A Sbjct: 123 AKKLGEMWNNLNDSEKQPYITKAA 146
>UBF1_MOUSE (P25976) Nucleolar transcription factor 1 (Upstream-binding factor| 1) (UBF-1) Length = 765 Score = 37.0 bits (84), Expect = 0.055 Identities = 19/61 (31%), Positives = 29/61 (47%) Frame = -1 Query: 548 GGVAKPKRAPTPFFVFLAEFRPQYMEKHPXXXXXXXXXXXXXEKWRSMSDEEKAKYGGKK 369 GG KPKR + F+F E R Q E+ P W +++++KAKY ++ Sbjct: 402 GGSEKPKRPVSAMFIFSEEKRRQLQEERP-ELSESELTRLLARMWNDLTEKKKAKYKARE 460 Query: 368 A 366 A Sbjct: 461 A 461 Score = 30.8 bits (68), Expect = 4.0 Identities = 15/51 (29%), Positives = 26/51 (50%) Frame = -1 Query: 533 PKRAPTPFFVFLAEFRPQYMEKHPXXXXXXXXXXXXXEKWRSMSDEEKAKY 381 PK+ TP+F F E R +Y + HP +K++ + +++K KY Sbjct: 112 PKKPLTPYFRFFMEKRAKYAKLHP-EMSNLDLTKILSKKYKELPEKKKMKY 161
>HMGB1_CRIGR (P07156) High mobility group protein B1 (High mobility group| protein 1) (HMG-1) (Fragment) Length = 180 Score = 35.4 bits (80), Expect = 0.16 Identities = 20/68 (29%), Positives = 32/68 (47%) Frame = -1 Query: 569 GKSKTATGGVAKPKRAPTPFFVFLAEFRPQYMEKHPXXXXXXXXXXXXXEKWRSMSDEEK 390 G++K PKR P+ FF+F +E+RP+ +HP E W + + ++K Sbjct: 48 GETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHP-GLSIGDVAKKLGEMWNNTAADDK 106 Query: 389 AKYGGKKA 366 Y K A Sbjct: 107 QPYEKKAA 114
>HMGT_ONCMY (P07746) High mobility group-T protein (HMG-T) (HMG-T1) (HMG-1)| Length = 204 Score = 35.4 bits (80), Expect = 0.16 Identities = 19/54 (35%), Positives = 27/54 (50%) Frame = -1 Query: 533 PKRAPTPFFVFLAEFRPQYMEKHPXXXXXXXXXXXXXEKWRSMSDEEKAKYGGK 372 PKR + FF+F A+FRPQ + P EKW +++ E+K Y K Sbjct: 94 PKRPSSAFFIFCADFRPQVKGETP-GLSIGDVAKKLGEKWNNLTAEDKVPYEKK 146
>HMGB1_RAT (P63159) High mobility group protein B1 (High mobility group| protein 1) (HMG-1) (Amphoterin) (Heparin-binding protein p30) Length = 214 Score = 35.4 bits (80), Expect = 0.16 Identities = 20/68 (29%), Positives = 32/68 (47%) Frame = -1 Query: 569 GKSKTATGGVAKPKRAPTPFFVFLAEFRPQYMEKHPXXXXXXXXXXXXXEKWRSMSDEEK 390 G++K PKR P+ FF+F +E+RP+ +HP E W + + ++K Sbjct: 82 GETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHP-GLSIGDVAKKLGEMWNNTAADDK 140 Query: 389 AKYGGKKA 366 Y K A Sbjct: 141 QPYEKKAA 148
>HMGB1_MOUSE (P63158) High mobility group protein B1 (High mobility group| protein 1) (HMG-1) Length = 214 Score = 35.4 bits (80), Expect = 0.16 Identities = 20/68 (29%), Positives = 32/68 (47%) Frame = -1 Query: 569 GKSKTATGGVAKPKRAPTPFFVFLAEFRPQYMEKHPXXXXXXXXXXXXXEKWRSMSDEEK 390 G++K PKR P+ FF+F +E+RP+ +HP E W + + ++K Sbjct: 82 GETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHP-GLSIGDVAKKLGEMWNNTAADDK 140 Query: 389 AKYGGKKA 366 Y K A Sbjct: 141 QPYEKKAA 148
>HMGB1_MACFA (Q4R844) High mobility group protein B1 (High mobility group| protein 1) (HMG-1) Length = 214 Score = 35.4 bits (80), Expect = 0.16 Identities = 20/68 (29%), Positives = 32/68 (47%) Frame = -1 Query: 569 GKSKTATGGVAKPKRAPTPFFVFLAEFRPQYMEKHPXXXXXXXXXXXXXEKWRSMSDEEK 390 G++K PKR P+ FF+F +E+RP+ +HP E W + + ++K Sbjct: 82 GETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHP-GLSIGDVAKKLGEMWNNTAADDK 140 Query: 389 AKYGGKKA 366 Y K A Sbjct: 141 QPYEKKAA 148
>HMGB1_HUMAN (P09429) High mobility group protein B1 (High mobility group| protein 1) (HMG-1) Length = 214 Score = 35.4 bits (80), Expect = 0.16 Identities = 20/68 (29%), Positives = 32/68 (47%) Frame = -1 Query: 569 GKSKTATGGVAKPKRAPTPFFVFLAEFRPQYMEKHPXXXXXXXXXXXXXEKWRSMSDEEK 390 G++K PKR P+ FF+F +E+RP+ +HP E W + + ++K Sbjct: 82 GETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHP-GLSIGDVAKKLGEMWNNTAADDK 140 Query: 389 AKYGGKKA 366 Y K A Sbjct: 141 QPYEKKAA 148
>HMGB1_CANFA (Q6YKA4) High mobility group protein B1 (High mobility group| protein 1) (HMG-1) Length = 214 Score = 35.4 bits (80), Expect = 0.16 Identities = 20/68 (29%), Positives = 32/68 (47%) Frame = -1 Query: 569 GKSKTATGGVAKPKRAPTPFFVFLAEFRPQYMEKHPXXXXXXXXXXXXXEKWRSMSDEEK 390 G++K PKR P+ FF+F +E+RP+ +HP E W + + ++K Sbjct: 82 GETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHP-GLSIGDVAKKLGEMWNNTAADDK 140 Query: 389 AKYGGKKA 366 Y K A Sbjct: 141 QPYEKKAA 148
>HMGB1_BOVIN (P10103) High mobility group protein B1 (High mobility group| protein 1) (HMG-1) Length = 214 Score = 35.4 bits (80), Expect = 0.16 Identities = 20/68 (29%), Positives = 32/68 (47%) Frame = -1 Query: 569 GKSKTATGGVAKPKRAPTPFFVFLAEFRPQYMEKHPXXXXXXXXXXXXXEKWRSMSDEEK 390 G++K PKR P+ FF+F +E+RP+ +HP E W + + ++K Sbjct: 82 GETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHP-GLSIGDVAKKLGEMWNNTAADDK 140 Query: 389 AKYGGKKA 366 Y K A Sbjct: 141 QPYEKKAA 148
>HMGB2_RAT (P52925) High mobility group protein B2 (High mobility group| protein 2) (HMG-2) Length = 209 Score = 35.0 bits (79), Expect = 0.21 Identities = 19/56 (33%), Positives = 26/56 (46%) Frame = -1 Query: 533 PKRAPTPFFVFLAEFRPQYMEKHPXXXXXXXXXXXXXEKWRSMSDEEKAKYGGKKA 366 PKR P+ FF+F +E RP+ +HP E W S ++K Y K A Sbjct: 94 PKRPPSAFFLFCSEHRPKIKSEHP-GLSIGDTAKKLGEMWSEQSAKDKQPYEQKAA 148
>HMGB2_PIG (P17741) High mobility group protein B2 (High mobility group| protein 2) (HMG-2) Length = 209 Score = 35.0 bits (79), Expect = 0.21 Identities = 19/56 (33%), Positives = 26/56 (46%) Frame = -1 Query: 533 PKRAPTPFFVFLAEFRPQYMEKHPXXXXXXXXXXXXXEKWRSMSDEEKAKYGGKKA 366 PKR P+ FF+F +E RP+ +HP E W S ++K Y K A Sbjct: 94 PKRPPSAFFLFCSEHRPKIKSEHP-GLSIGDTAKKLGEMWSEQSAKDKQPYEQKAA 148
>HMGB2_HUMAN (P26583) High mobility group protein B2 (High mobility group| protein 2) (HMG-2) Length = 208 Score = 35.0 bits (79), Expect = 0.21 Identities = 19/56 (33%), Positives = 26/56 (46%) Frame = -1 Query: 533 PKRAPTPFFVFLAEFRPQYMEKHPXXXXXXXXXXXXXEKWRSMSDEEKAKYGGKKA 366 PKR P+ FF+F +E RP+ +HP E W S ++K Y K A Sbjct: 94 PKRPPSAFFLFCSEHRPKIKSEHP-GLSIGDTAKKLGEMWSEQSAKDKQPYEQKAA 148
>HMGB1_PIG (P12682) High mobility group protein B1 (High mobility group| protein 1) (HMG-1) Length = 214 Score = 35.0 bits (79), Expect = 0.21 Identities = 20/68 (29%), Positives = 32/68 (47%) Frame = -1 Query: 569 GKSKTATGGVAKPKRAPTPFFVFLAEFRPQYMEKHPXXXXXXXXXXXXXEKWRSMSDEEK 390 G++K PKR P+ FF+F +E+RP+ +HP E W + + ++K Sbjct: 82 GETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHP-GLSIGDVAKKLGEMWNNTAADDK 140 Query: 389 AKYGGKKA 366 Y K A Sbjct: 141 HPYEKKAA 148
>HMG1X_HUMAN (Q9UGV6) High mobility group protein 1-like 10 (HMG-1L10)| Length = 211 Score = 33.5 bits (75), Expect = 0.61 Identities = 19/68 (27%), Positives = 31/68 (45%) Frame = -1 Query: 569 GKSKTATGGVAKPKRAPTPFFVFLAEFRPQYMEKHPXXXXXXXXXXXXXEKWRSMSDEEK 390 G++K PKR P+ FF+F + +RP+ +HP E W + + ++K Sbjct: 83 GETKKKFKDPNAPKRTPSAFFLFCSAYRPKIKGEHP-GLSIGDVAKKLGEMWNNTAADDK 141 Query: 389 AKYGGKKA 366 Y K A Sbjct: 142 QPYEKKAA 149
>HMGB2_MOUSE (P30681) High mobility group protein B2 (High mobility group| protein 2) (HMG-2) Length = 209 Score = 33.1 bits (74), Expect = 0.80 Identities = 19/56 (33%), Positives = 26/56 (46%) Frame = -1 Query: 533 PKRAPTPFFVFLAEFRPQYMEKHPXXXXXXXXXXXXXEKWRSMSDEEKAKYGGKKA 366 PKR P+ FF+F +E RP+ +HP E W S ++K Y K A Sbjct: 94 PKRPPSAFFLFCSENRPKIKIEHP-GLSIGDTAKKLGEMWSEQSAKDKQPYEQKAA 148
>SP100_HYLLA (Q9N1Q5) Nuclear autoantigen Sp-100 (Speckled 100 kDa) (Nuclear| dot-associated Sp100 protein) (Fragment) Length = 242 Score = 33.1 bits (74), Expect = 0.80 Identities = 14/38 (36%), Positives = 21/38 (55%) Frame = -1 Query: 575 ASGKSKTATGGVAKPKRAPTPFFVFLAEFRPQYMEKHP 462 + G+ K PKR P FF+F +E+RP+ +HP Sbjct: 129 SKGEKKKKFKDPNAPKRPPLAFFLFCSEYRPKIKGEHP 166
>SP100_GORGO (Q9N1Q6) Nuclear autoantigen Sp-100 (Speckled 100 kDa) (Nuclear| dot-associated Sp100 protein) (Fragment) Length = 225 Score = 32.7 bits (73), Expect = 1.0 Identities = 12/24 (50%), Positives = 17/24 (70%) Frame = -1 Query: 533 PKRAPTPFFVFLAEFRPQYMEKHP 462 PKR P FF+F +E+RP+ +HP Sbjct: 118 PKRPPLAFFLFCSEYRPKIKGEHP 141
>SP100_PANTR (Q9N1Q7) Nuclear autoantigen Sp-100 (Speckled 100 kDa) (Nuclear| dot-associated Sp100 protein) (Fragment) Length = 215 Score = 32.7 bits (73), Expect = 1.0 Identities = 12/24 (50%), Positives = 17/24 (70%) Frame = -1 Query: 533 PKRAPTPFFVFLAEFRPQYMEKHP 462 PKR P FF+F +E+RP+ +HP Sbjct: 124 PKRPPLAFFLFCSEYRPKIKGEHP 147
>SP100_HUMAN (P23497) Nuclear autoantigen Sp-100 (Speckled 100 kDa) (Nuclear| dot-associated Sp100 protein) (Lysp100b) Length = 879 Score = 32.7 bits (73), Expect = 1.0 Identities = 12/24 (50%), Positives = 17/24 (70%) Frame = -1 Query: 533 PKRAPTPFFVFLAEFRPQYMEKHP 462 PKR P FF+F +E+RP+ +HP Sbjct: 769 PKRPPLAFFLFCSEYRPKIKGEHP 792
>HMGB2_CHICK (P26584) High mobility group protein B2 (High mobility group| protein 2) (HMG-2) Length = 206 Score = 32.0 bits (71), Expect = 1.8 Identities = 12/24 (50%), Positives = 16/24 (66%) Frame = -1 Query: 533 PKRAPTPFFVFLAEFRPQYMEKHP 462 PKR P+ FF+F +E RP+ HP Sbjct: 94 PKRPPSAFFLFCSEHRPKIKNDHP 117
>UBF1A_XENLA (P25979) Nucleolar transcription factor 1-A (Upstream binding| factor 1-A) (UBF-1-A) (xUBF-1) Length = 677 Score = 30.8 bits (68), Expect = 4.0 Identities = 15/51 (29%), Positives = 26/51 (50%) Frame = -1 Query: 533 PKRAPTPFFVFLAEFRPQYMEKHPXXXXXXXXXXXXXEKWRSMSDEEKAKY 381 PK+ TP+F F E R +Y + HP +K++ + +++K KY Sbjct: 112 PKKPLTPYFRFFMEKRAKYAKLHP-EMSNLDLTKILSKKYKELPEKKKMKY 161
>COAT_BYDVN (P27578) Coat protein| Length = 204 Score = 30.8 bits (68), Expect = 4.0 Identities = 18/38 (47%), Positives = 21/38 (55%) Frame = -3 Query: 558 DGHRRRRQAEARPDPLLRLPG*VQAAVHGEAPRGKGRR 445 +G RRRRQ AR P R V A +G A RG+ RR Sbjct: 11 NGSRRRRQRVARRRPAARTQPVVVVASNGPARRGRRRR 48
>UBF1B_XENLA (P25980) Nucleolar transcription factor 1-B (Upstream binding| factor 1-B) (UBF-1-B) (xUBF-2) Length = 701 Score = 30.8 bits (68), Expect = 4.0 Identities = 15/51 (29%), Positives = 26/51 (50%) Frame = -1 Query: 533 PKRAPTPFFVFLAEFRPQYMEKHPXXXXXXXXXXXXXEKWRSMSDEEKAKY 381 PK+ TP+F F E R +Y + HP +K++ + +++K KY Sbjct: 112 PKKPLTPYFRFFMEKRAKYAKLHP-EMSNLDLTKILSKKYKELPEKKKMKY 161
>HMG2_DROME (Q24537) High mobility group protein DSP1 (Protein dorsal switch 1)| Length = 393 Score = 30.0 bits (66), Expect = 6.7 Identities = 15/54 (27%), Positives = 27/54 (50%), Gaps = 1/54 (1%) Frame = -1 Query: 539 AKPKRAPTPFFVFLAEFRPQYMEKHPXXXXXXXXXXXX-XEKWRSMSDEEKAKY 381 AKP+ T + F+ R ++ +KHP E+W++M D+EK ++ Sbjct: 177 AKPRGRMTAYAYFVQTCREEHKKKHPDETVIFAEFSRKCAERWKTMVDKEKKRF 230
>IXR1_YEAST (P33417) Intrastrand crosslink recognition protein| (Structure-specific recognition protein) (SSRP) Length = 597 Score = 30.0 bits (66), Expect = 6.7 Identities = 16/51 (31%), Positives = 24/51 (47%) Frame = -1 Query: 533 PKRAPTPFFVFLAEFRPQYMEKHPXXXXXXXXXXXXXEKWRSMSDEEKAKY 381 PKR PF F E RP ++++P E+WR + +KA+Y Sbjct: 434 PKRPSGPFIQFTQEIRPTVVKENP-DKGLIEITKIIGERWRELDPAKKAEY 483 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 53,541,833 Number of Sequences: 219361 Number of extensions: 742910 Number of successful extensions: 1846 Number of sequences better than 10.0: 36 Number of HSP's better than 10.0 without gapping: 1797 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1841 length of database: 80,573,946 effective HSP length: 108 effective length of database: 56,882,958 effective search space used: 6655306086 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
