ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasdp19
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1AAPC_PENCL (Q40784) Putative apospory-associated protein C 107 2e-23
2YMY9_YEAST (Q03161) Hypothetical UPF0010 protein YMR099c 32 1.3
3CSTN1_HUMAN (O94985) Calsyntenin-1 precursor 31 3.7

>AAPC_PENCL (Q40784) Putative apospory-associated protein C|
          Length = 329

 Score =  107 bits (268), Expect = 2e-23
 Identities = 50/62 (80%), Positives = 56/62 (90%)
 Frame = -1

Query: 654 RSKTILDFGDEEYKHMLCVEPAAVEKPITLKPGEEWKGRLELSAVPSSYYSGQLDPDKVL 475
           ++K + DFGD EYK+MLCVEPAAVEKPITLKPGEEW+GR+ LSAVPSSY SGQLDP KVL
Sbjct: 268 KAKAMQDFGDAEYKNMLCVEPAAVEKPITLKPGEEWRGRIALSAVPSSYCSGQLDPLKVL 327

Query: 474 HG 469
           HG
Sbjct: 328 HG 329



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>YMY9_YEAST (Q03161) Hypothetical UPF0010 protein YMR099c|
          Length = 297

 Score = 32.3 bits (72), Expect = 1.3
 Identities = 14/37 (37%), Positives = 24/37 (64%), Gaps = 1/37 (2%)
 Frame = -1

Query: 654 RSKTILDFGDEE-YKHMLCVEPAAVEKPITLKPGEEW 547
           +S+ + DF  +  Y+ M+C+EP  V   I+L PG++W
Sbjct: 244 KSQGMADFEPKTGYQQMICIEPGHVHDFISLAPGKKW 280



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>CSTN1_HUMAN (O94985) Calsyntenin-1 precursor|
          Length = 981

 Score = 30.8 bits (68), Expect = 3.7
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = -1

Query: 144 TSASEYQLLSDYCLYSSKICTYTILGTCWCE 52
           TS   + +  DY L+ SKI T  ++G CW E
Sbjct: 477 TSHEPFSVTEDYPLHPSKIETQLVVGACWQE 507


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 97,183,416
Number of Sequences: 219361
Number of extensions: 2038607
Number of successful extensions: 5108
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4987
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5107
length of database: 80,573,946
effective HSP length: 108
effective length of database: 56,882,958
effective search space used: 6200242422
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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