ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbasdp17 |
|---|---|
| Clone Library Name | barley_pub |
>ref|NM_000076.1| Homo sapiens cyclin-dependent kinase inhibitor 1C (p57, Kip2) (CDKN1C), mRNA Length = 1511 Score = 50.1 bits (25), Expect = 0.009 Identities = 25/25 (100%) Strand = Plus / Minus Query: 519 aggggaaaggagaggaggagagggc 543 ||||||||||||||||||||||||| Sbjct: 207 aggggaaaggagaggaggagagggc 183
>gb|AC013791.9| Homo sapiens chromosome 11, clone RP11-19N21, complete sequence Length = 174569 Score = 50.1 bits (25), Expect = 0.009 Identities = 25/25 (100%) Strand = Plus / Minus Query: 519 aggggaaaggagaggaggagagggc 543 ||||||||||||||||||||||||| Sbjct: 56840 aggggaaaggagaggaggagagggc 56816
>gb|BC067842.1| Homo sapiens cyclin-dependent kinase inhibitor 1C (p57, Kip2), mRNA (cDNA clone MGC:87429 IMAGE:30332904), complete cds Length = 1584 Score = 50.1 bits (25), Expect = 0.009 Identities = 25/25 (100%) Strand = Plus / Minus Query: 519 aggggaaaggagaggaggagagggc 543 ||||||||||||||||||||||||| Sbjct: 232 aggggaaaggagaggaggagagggc 208
>gb|AC001228.1|HSAC001228 244Kb Contig from Human Chromosome 11p15.5 spanning D11S1 through D11S25, complete sequence Length = 244254 Score = 50.1 bits (25), Expect = 0.009 Identities = 25/25 (100%) Strand = Plus / Plus Query: 519 aggggaaaggagaggaggagagggc 543 ||||||||||||||||||||||||| Sbjct: 65112 aggggaaaggagaggaggagagggc 65136
>gb|AC005950.1|AC005950 Homo sapiens Chromosome 11p15.5 PAC clone pDJ754h15 containing cdk-inhibitor p57/KIP2 (CDKN1C) gene, complete sequence Length = 137932 Score = 50.1 bits (25), Expect = 0.009 Identities = 25/25 (100%) Strand = Plus / Plus Query: 519 aggggaaaggagaggaggagagggc 543 ||||||||||||||||||||||||| Sbjct: 89073 aggggaaaggagaggaggagagggc 89097
>dbj|D64137.1|HUMKIP2 Homo sapiens KIP2 gene for Cdk-inhibitor p57KIP2, complete cds (exon1-4) Length = 3158 Score = 50.1 bits (25), Expect = 0.009 Identities = 25/25 (100%) Strand = Plus / Minus Query: 519 aggggaaaggagaggaggagagggc 543 ||||||||||||||||||||||||| Sbjct: 1175 aggggaaaggagaggaggagagggc 1151
>gb|U48869.1|HSU48869 Human cdk-inhibitor p57/KIP2 (CDKN1C) gene, complete cds Length = 2211 Score = 50.1 bits (25), Expect = 0.009 Identities = 25/25 (100%) Strand = Plus / Minus Query: 519 aggggaaaggagaggaggagagggc 543 ||||||||||||||||||||||||| Sbjct: 357 aggggaaaggagaggaggagagggc 333
>gb|U22398.1|HSU22398 Human Cdk-inhibitor p57KIP2 (KIP2) mRNA, complete cds Length = 1511 Score = 50.1 bits (25), Expect = 0.009 Identities = 25/25 (100%) Strand = Plus / Minus Query: 519 aggggaaaggagaggaggagagggc 543 ||||||||||||||||||||||||| Sbjct: 207 aggggaaaggagaggaggagagggc 183
>gb|AC117183.3| Mus musculus BAC clone RP23-37B19 from 19, complete sequence Length = 190192 Score = 48.1 bits (24), Expect = 0.035 Identities = 24/24 (100%) Strand = Plus / Minus Query: 522 ggaaaggagaggaggagagggcaa 545 |||||||||||||||||||||||| Sbjct: 102017 ggaaaggagaggaggagagggcaa 101994
>gb|AC160088.2| Mus musculus BAC clone RP23-134J11 from chromosome 19, complete sequence Length = 221101 Score = 48.1 bits (24), Expect = 0.035 Identities = 24/24 (100%) Strand = Plus / Minus Query: 522 ggaaaggagaggaggagagggcaa 545 |||||||||||||||||||||||| Sbjct: 219645 ggaaaggagaggaggagagggcaa 219622
>emb|AL845488.7| Mouse DNA sequence from clone RP23-215P8 on chromosome 2, complete sequence Length = 153445 Score = 48.1 bits (24), Expect = 0.035 Identities = 24/24 (100%) Strand = Plus / Minus Query: 519 aggggaaaggagaggaggagaggg 542 |||||||||||||||||||||||| Sbjct: 62697 aggggaaaggagaggaggagaggg 62674
>gb|AC154827.3| Mus musculus BAC clone RP24-546P18 from chromosome 14, complete sequence Length = 168432 Score = 44.1 bits (22), Expect = 0.54 Identities = 22/22 (100%) Strand = Plus / Plus Query: 521 gggaaaggagaggaggagaggg 542 |||||||||||||||||||||| Sbjct: 60394 gggaaaggagaggaggagaggg 60415
>gb|AC125141.4| Mus musculus BAC clone RP24-333C3 from chromosome 17, complete sequence Length = 148447 Score = 44.1 bits (22), Expect = 0.54 Identities = 22/22 (100%) Strand = Plus / Minus Query: 519 aggggaaaggagaggaggagag 540 |||||||||||||||||||||| Sbjct: 57364 aggggaaaggagaggaggagag 57343
>gb|AC102668.12| Mus musculus chromosome 6, clone RP23-296I18, complete sequence Length = 186488 Score = 44.1 bits (22), Expect = 0.54 Identities = 22/22 (100%) Strand = Plus / Plus Query: 519 aggggaaaggagaggaggagag 540 |||||||||||||||||||||| Sbjct: 47554 aggggaaaggagaggaggagag 47575
>gb|AF337546.1| Brassica oleracea chlorophyllase 3 mRNA, complete cds Length = 884 Score = 44.1 bits (22), Expect = 0.54 Identities = 22/22 (100%) Strand = Plus / Minus Query: 81 ttacctcataattctaatatag 102 |||||||||||||||||||||| Sbjct: 809 ttacctcataattctaatatag 788
>gb|AC068780.31| Homo sapiens 12 BAC RP11-163B7 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 105836 Score = 44.1 bits (22), Expect = 0.54 Identities = 25/26 (96%) Strand = Plus / Plus Query: 519 aggggaaaggagaggaggagagggca 544 |||||| ||||||||||||||||||| Sbjct: 67921 aggggagaggagaggaggagagggca 67946
>gb|AC138331.4| Homo sapiens 12 BAC RP11-781A6 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 113301 Score = 44.1 bits (22), Expect = 0.54 Identities = 25/26 (96%) Strand = Plus / Plus Query: 519 aggggaaaggagaggaggagagggca 544 |||||| ||||||||||||||||||| Sbjct: 75436 aggggagaggagaggaggagagggca 75461
>gb|AC153627.2| Mus musculus 6 BAC RP23-104H13 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 198060 Score = 44.1 bits (22), Expect = 0.54 Identities = 22/22 (100%) Strand = Plus / Plus Query: 519 aggggaaaggagaggaggagag 540 |||||||||||||||||||||| Sbjct: 168588 aggggaaaggagaggaggagag 168609
>emb|CT025681.8| Mouse DNA sequence from clone RP24-325P17 on chromosome 14, complete sequence Length = 205581 Score = 44.1 bits (22), Expect = 0.54 Identities = 22/22 (100%) Strand = Plus / Minus Query: 521 gggaaaggagaggaggagaggg 542 |||||||||||||||||||||| Sbjct: 124205 gggaaaggagaggaggagaggg 124184
>gb|AC165961.2| Mus musculus BAC clone RP23-378M19 from chromosome 16, complete sequence Length = 211284 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 523 gaaaggagaggaggagagggc 543 ||||||||||||||||||||| Sbjct: 15348 gaaaggagaggaggagagggc 15368
>gb|AC055872.23| Homo sapiens chromosome 17, clone RP11-636N17, complete sequence Length = 202360 Score = 42.1 bits (21), Expect = 2.1 Identities = 27/29 (93%) Strand = Plus / Plus Query: 516 aacaggggaaaggagaggaggagagggca 544 ||||||||| |||||||||||||||||| Sbjct: 123315 aacaggggaggggagaggaggagagggca 123343
>gb|AC124385.3| Mus musculus BAC clone RP24-421A2 from chromosome 1, complete sequence Length = 163778 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 473 gcttgaaggaagaagagcaag 493 ||||||||||||||||||||| Sbjct: 155446 gcttgaaggaagaagagcaag 155466
>gb|AC127598.3| Mus musculus BAC clone RP23-84E16 from 7, complete sequence Length = 186752 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 519 aggggaaaggagaggaggaga 539 ||||||||||||||||||||| Sbjct: 131407 aggggaaaggagaggaggaga 131387
>emb|AL590710.14| Human DNA sequence from clone RP11-153P4 on chromosome 9 Contains the 3' end of the VAV2 gene for vav 2 oncogene, the 5' end of the SARDH gene for sarcosine dehydrogenase (SAR, SDH, SARD, DMGDHL1) and a CpG island, complete sequence Length = 118671 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 521 gggaaaggagaggaggagagg 541 ||||||||||||||||||||| Sbjct: 12597 gggaaaggagaggaggagagg 12577
>emb|AL365494.17| Human DNA sequence from clone RP11-317B10 on chromosome 9 Contains the 3' end of the SARDH gene for sarcosine dehydrogenase (SAR, SDH, SARD, DMGDHL1), the DBH gene for dopamine beta-hydroxylase (dopamine beta-monooxygenase) and a novel gene, complete sequence Length = 53242 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 522 ggaaaggagaggaggagaggg 542 ||||||||||||||||||||| Sbjct: 28237 ggaaaggagaggaggagaggg 28257
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 42.1 bits (21), Expect = 2.1 Identities = 24/25 (96%) Strand = Plus / Plus Query: 516 aacaggggaaaggagaggaggagag 540 |||||||||||||||| |||||||| Sbjct: 14126669 aacaggggaaaggagaagaggagag 14126693
>gb|AE017282.2| Methylococcus capsulatus str. Bath, complete genome Length = 3304561 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 545 acgaggtcggcctcgtcctgg 565 ||||||||||||||||||||| Sbjct: 9390 acgaggtcggcctcgtcctgg 9410
>gb|AC079395.6| Homo sapiens BAC clone RP11-219H23 from 2, complete sequence Length = 82827 Score = 42.1 bits (21), Expect = 2.1 Identities = 24/25 (96%) Strand = Plus / Minus Query: 521 gggaaaggagaggaggagagggcaa 545 |||| |||||||||||||||||||| Sbjct: 26776 gggagaggagaggaggagagggcaa 26752
>dbj|AP004856.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1570_H12 Length = 129767 Score = 42.1 bits (21), Expect = 2.1 Identities = 24/25 (96%) Strand = Plus / Plus Query: 516 aacaggggaaaggagaggaggagag 540 |||||||||||||||| |||||||| Sbjct: 26689 aacaggggaaaggagaagaggagag 26713
>dbj|AK120658.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013158E21, full insert sequence Length = 1929 Score = 42.1 bits (21), Expect = 2.1 Identities = 27/29 (93%) Strand = Plus / Plus Query: 199 cggcgacgggcgacggcggggaagcgggg 227 ||||||||| |||||||||||| |||||| Sbjct: 642 cggcgacggccgacggcggggaggcgggg 670
>dbj|AK105276.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-116-A12, full insert sequence Length = 1919 Score = 42.1 bits (21), Expect = 2.1 Identities = 24/25 (96%) Strand = Plus / Plus Query: 516 aacaggggaaaggagaggaggagag 540 |||||||||||||||| |||||||| Sbjct: 864 aacaggggaaaggagaagaggagag 888
>gb|AC006537.1|AC006537 Homo sapiens chromosome 19, cosmid R30140, complete sequence Length = 38158 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 522 ggaaaggagaggaggagaggg 542 ||||||||||||||||||||| Sbjct: 7901 ggaaaggagaggaggagaggg 7881
>gb|AC142410.4| Mus musculus BAC clone RP24-173I18 from 1, complete sequence Length = 145213 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 473 gcttgaaggaagaagagcaag 493 ||||||||||||||||||||| Sbjct: 80086 gcttgaaggaagaagagcaag 80066
>gb|AC159012.2| Gallus gallus BAC clone CH261-5N5 from chromosome unknown, complete sequence Length = 231341 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 522 ggaaaggagaggaggagaggg 542 ||||||||||||||||||||| Sbjct: 78974 ggaaaggagaggaggagaggg 78994
>gb|AC158367.3| Gallus gallus BAC clone CH261-50N13 from chromosome unknown, complete sequence Length = 230079 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 522 ggaaaggagaggaggagaggg 542 ||||||||||||||||||||| Sbjct: 191142 ggaaaggagaggaggagaggg 191162
>gb|AC000388.1|AC000388 Genomic sequence from Human 9q34, complete sequence Length = 48265 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 521 gggaaaggagaggaggagagg 541 ||||||||||||||||||||| Sbjct: 43203 gggaaaggagaggaggagagg 43223
>gb|AC000404.1|AC000404 Genomic sequence from Human 9q34, complete sequence Length = 46651 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 522 ggaaaggagaggaggagaggg 542 ||||||||||||||||||||| Sbjct: 32749 ggaaaggagaggaggagaggg 32729
>gb|AE014291.4| Brucella suis 1330 chromosome I, complete sequence Length = 2107794 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 466 cctgcctgcttgaaggaaga 485 |||||||||||||||||||| Sbjct: 678303 cctgcctgcttgaaggaaga 678284
>gb|AE017351.1| Cryptococcus neoformans var. neoformans JEC21 chromosome 11, complete sequence Length = 1019846 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 519 aggggaaaggagaggaggag 538 |||||||||||||||||||| Sbjct: 44677 aggggaaaggagaggaggag 44658
>gb|AC132918.17| Mus musculus chromosome 15, clone RP24-328F10, complete sequence Length = 186125 Score = 40.1 bits (20), Expect = 8.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 519 aggggaaaggagaggaggagaggg 542 |||||||||||||||||| ||||| Sbjct: 168795 aggggaaaggagaggaggggaggg 168818
>ref|XM_418586.1| PREDICTED: Gallus gallus similar to Fatty acid synthase (LOC420484), mRNA Length = 2820 Score = 40.1 bits (20), Expect = 8.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 521 gggaaaggagaggaggagagggca 544 ||||||||||| |||||||||||| Sbjct: 108 gggaaaggagaagaggagagggca 85
>gb|AC122253.5| Mus musculus BAC clone RP23-171K3 from chromosome 17, complete sequence Length = 197161 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 521 gggaaaggagaggaggagag 540 |||||||||||||||||||| Sbjct: 164591 gggaaaggagaggaggagag 164572
>gb|AC132602.2| Mus musculus BAC clone RP23-477C13 from chromosome 14, complete sequence Length = 194038 Score = 40.1 bits (20), Expect = 8.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 519 aggggaaaggagaggaggagaggg 542 |||||||||||||||||| ||||| Sbjct: 119920 aggggaaaggagaggaggggaggg 119943
>gb|AC153608.10| Mus musculus 6 BAC RP23-79A7 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 188294 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 523 gaaaggagaggaggagaggg 542 |||||||||||||||||||| Sbjct: 148826 gaaaggagaggaggagaggg 148845
>gb|AC153518.14| Mus musculus 10 BAC RP23-426B18 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 160531 Score = 40.1 bits (20), Expect = 8.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 519 aggggaaaggagaggaggagaggg 542 ||||| |||||||||||||||||| Sbjct: 71827 agggggaaggagaggaggagaggg 71850
>ref|XM_746120.1| Aspergillus fumigatus Af293 SSU processome component Utp10 (Afu6g13370) partial mRNA Length = 5397 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 477 gaaggaagaagagcaagatc 496 |||||||||||||||||||| Sbjct: 1428 gaaggaagaagagcaagatc 1447
>ref|XM_567587.1| Cryptococcus neoformans var. neoformans JEC21 hypothetical protein (CNK00150) partial mRNA Length = 1314 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 519 aggggaaaggagaggaggag 538 |||||||||||||||||||| Sbjct: 842 aggggaaaggagaggaggag 861
>gb|AC126932.4| Mus musculus BAC clone RP24-80G20 from chromosome 3, complete sequence Length = 214712 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 520 ggggaaaggagaggaggaga 539 |||||||||||||||||||| Sbjct: 149688 ggggaaaggagaggaggaga 149669
>gb|AC125537.4| Mus musculus BAC clone RP24-165M1 from chromosome 12, complete sequence Length = 167744 Score = 40.1 bits (20), Expect = 8.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 519 aggggaaaggagaggaggagaggg 542 |||| ||||||||||||||||||| Sbjct: 87507 agggtaaaggagaggaggagaggg 87530
>gb|AC073590.5| Mus musculus chromosome 12 clone RP23-206K17, complete sequence Length = 204107 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 523 gaaaggagaggaggagaggg 542 |||||||||||||||||||| Sbjct: 145358 gaaaggagaggaggagaggg 145339
>gb|AC132133.1| Mus musculus BAC clone RP23-242A12 from 17, complete sequence Length = 174152 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 452 gagaccatggccttcctgcc 471 |||||||||||||||||||| Sbjct: 107672 gagaccatggccttcctgcc 107691
>gb|AC098879.3| Mus musculus BAC clone RP23-121N21 from X, complete sequence Length = 195929 Score = 40.1 bits (20), Expect = 8.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 519 aggggaaaggagaggaggagaggg 542 |||||||||||||||||| ||||| Sbjct: 138634 aggggaaaggagaggaggggaggg 138657
>emb|AL451084.19| Human DNA sequence from clone RP11-357H24 on chromosome 10 Contains the 3' end of the TCF7L2 gene for transcription factor 7-like 2 (T-cell specific, HMG-box), complete sequence Length = 183815 Score = 40.1 bits (20), Expect = 8.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 519 aggggaaaggagaggaggagaggg 542 |||||||||||||||||| ||||| Sbjct: 86604 aggggaaaggagaggaggggaggg 86581
>emb|AL390244.19| Human DNA sequence from clone RP11-280F22 on chromosome 10, complete sequence Length = 101530 Score = 40.1 bits (20), Expect = 8.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 519 aggggaaaggagaggaggagaggg 542 |||||| ||||||||||||||||| Sbjct: 79276 aggggagaggagaggaggagaggg 79253
>emb|AL355141.17| Human DNA sequence from clone RP11-256K7 on chromosome 10 Contains a 60S ribosomal protein L9 (RPL9) pseudogene, complete sequence Length = 30631 Score = 40.1 bits (20), Expect = 8.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 519 aggggaaaggagaggaggagaggg 542 ||||||| |||||||||||||||| Sbjct: 6122 aggggaagggagaggaggagaggg 6145
>emb|AL691496.13| Mouse DNA sequence from clone RP23-6H1 on chromosome 4 Contains the 3' end of a novel gene, the Ambp gene for alpha 1 microglobulin/bikunin, the Kif12 gene for kinesin family member 12, the 5' end of the Col27a1 gene for procollagen type XXVII alpha 1 and a CpG island, complete sequence Length = 162062 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 522 ggaaaggagaggaggagagg 541 |||||||||||||||||||| Sbjct: 64969 ggaaaggagaggaggagagg 64950
>emb|AL589766.17| Mouse DNA sequence from clone RP23-19G4 on chromosome 13 contains the Vmp gene for vesicular membrane protein P24, complete sequence Length = 176183 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 522 ggaaaggagaggaggagagg 541 |||||||||||||||||||| Sbjct: 109037 ggaaaggagaggaggagagg 109018
>gb|AC092994.4| Homo sapiens 3 BAC RP11-656A15 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 159445 Score = 40.1 bits (20), Expect = 8.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 515 aaacaggggaaaggagaggaggag 538 |||||||||||||||||| ||||| Sbjct: 87762 aaacaggggaaaggagagaaggag 87739
>gb|AC023850.10| Homo sapiens chromosome 11, clone RP11-48J22, complete sequence Length = 165031 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 519 aggggaaaggagaggaggag 538 |||||||||||||||||||| Sbjct: 6435 aggggaaaggagaggaggag 6416
>gb|AC074140.5| Homo sapiens chromosome 19 clone LLNLF-18A12, complete sequence Length = 37049 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 522 ggaaaggagaggaggagagg 541 |||||||||||||||||||| Sbjct: 3884 ggaaaggagaggaggagagg 3865
>gb|AC069360.7| Homo sapiens chromosome 11, clone CTD1-2003C8, complete sequence Length = 124409 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 519 aggggaaaggagaggaggag 538 |||||||||||||||||||| Sbjct: 21519 aggggaaaggagaggaggag 21538
>gb|AC098685.7| Mus musculus clone ct7-393l21, complete sequence Length = 73632 Score = 40.1 bits (20), Expect = 8.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 519 aggggaaaggagaggaggagaggg 542 ||||||| |||||||||||||||| Sbjct: 52984 aggggaagggagaggaggagaggg 53007
>gb|AC016868.8| Homo sapiens chromosome 8, clone RP11-15G16, complete sequence Length = 155691 Score = 40.1 bits (20), Expect = 8.4 Identities = 26/28 (92%) Strand = Plus / Minus Query: 513 agaaacaggggaaaggagaggaggagag 540 ||||| || ||||||||||||||||||| Sbjct: 80548 agaaaaagaggaaaggagaggaggagag 80521
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 530 gaggaggagagggcaacgag 549 |||||||||||||||||||| Sbjct: 14822042 gaggaggagagggcaacgag 14822061
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 40.1 bits (20), Expect = 8.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 518 caggggaaaggagaggaggagagg 541 ||||||| |||||||||||||||| Sbjct: 4043536 caggggagaggagaggaggagagg 4043559
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 523 gaaaggagaggaggagaggg 542 |||||||||||||||||||| Sbjct: 14200600 gaaaggagaggaggagaggg 14200619
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 523 gaaaggagaggaggagaggg 542 |||||||||||||||||||| Sbjct: 4180397 gaaaggagaggaggagaggg 4180416
>emb|AL663021.4|OSJN00218 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0041M06, complete sequence Length = 107014 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 530 gaggaggagagggcaacgag 549 |||||||||||||||||||| Sbjct: 75980 gaggaggagagggcaacgag 75999
>gb|AC153559.4| Mus musculus 10 BAC RP23-86P1 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 185708 Score = 40.1 bits (20), Expect = 8.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 519 aggggaaaggagaggaggagaggg 542 |||||||||||| ||||||||||| Sbjct: 150916 aggggaaaggaggggaggagaggg 150939
>gb|AC155262.2| Mus musculus BAC clone RP23-452K4 from chromosome 13, complete sequence Length = 168429 Score = 40.1 bits (20), Expect = 8.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 519 aggggaaaggagaggaggagaggg 542 ||||||| |||||||||||||||| Sbjct: 102819 aggggaagggagaggaggagaggg 102842
>gb|AE009564.1| Brucella melitensis 16M chromosome I, section 121 of 195 of the complete sequence Length = 12499 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 466 cctgcctgcttgaaggaaga 485 |||||||||||||||||||| Sbjct: 10722 cctgcctgcttgaaggaaga 10741
>gb|AC079414.6| Homo sapiens chromosome 16 clone RP11-358L22, complete sequence Length = 167015 Score = 40.1 bits (20), Expect = 8.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 519 aggggaaaggagaggaggagaggg 542 |||||||||||||||||| ||||| Sbjct: 4408 aggggaaaggagaggaggggaggg 4431
>gb|AC013726.7| Homo sapiens BAC clone RP11-400N9 from 2, complete sequence Length = 214647 Score = 40.1 bits (20), Expect = 8.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 519 aggggaaaggagaggaggagaggg 542 |||||||||||||||||| ||||| Sbjct: 24748 aggggaaaggagaggaggggaggg 24771
>gb|AC012074.9| Homo sapiens BAC clone RP11-458N5 from 2, complete sequence Length = 197652 Score = 40.1 bits (20), Expect = 8.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 517 acaggggaaaggagaggaggagag 540 |||||||||||||| ||||||||| Sbjct: 74404 acaggggaaaggaggggaggagag 74381
>gb|AC026111.31| Homo sapiens 12 BAC RP11-603K19 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 72477 Score = 40.1 bits (20), Expect = 8.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 519 aggggaaaggagaggaggagaggg 542 |||||||||||| ||||||||||| Sbjct: 43182 aggggaaaggaggggaggagaggg 43205
>gb|AC140361.2| Mus musculus BAC clone RP24-247B3 from chromosome 17, complete sequence Length = 157937 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 521 gggaaaggagaggaggagag 540 |||||||||||||||||||| Sbjct: 142485 gggaaaggagaggaggagag 142504
>emb|BX322625.9| Mouse DNA sequence from clone RP24-158I12 on chromosome 2, complete sequence Length = 98004 Score = 40.1 bits (20), Expect = 8.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 519 aggggaaaggagaggaggagaggg 542 ||||||||||||||| |||||||| Sbjct: 70638 aggggaaaggagagggggagaggg 70615
>dbj|AB196517.1| Paralichthys olivaceus COL1A3 gene for type 1 collagen alpha 3, promoter region Length = 1322 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 172 ttggggaggtcctgggcgca 191 |||||||||||||||||||| Sbjct: 1237 ttggggaggtcctgggcgca 1218
>gb|AC009044.3|AC009044 Homo sapiens chromosome 16 clone RP11-190D6, complete sequence Length = 167195 Score = 40.1 bits (20), Expect = 8.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 519 aggggaaaggagaggaggagaggg 542 |||||||||||||||||| ||||| Sbjct: 86298 aggggaaaggagaggaggggaggg 86321
>gb|AE017223.1| Brucella abortus biovar 1 str. 9-941 chromosome I, complete sequence Length = 2124241 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 466 cctgcctgcttgaaggaaga 485 |||||||||||||||||||| Sbjct: 700006 cctgcctgcttgaaggaaga 699987
>dbj|AP003118.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:OJ1174_D05 Length = 128525 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 523 gaaaggagaggaggagaggg 542 |||||||||||||||||||| Sbjct: 18364 gaaaggagaggaggagaggg 18383
>dbj|AP002524.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0406H10 Length = 156419 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 523 gaaaggagaggaggagaggg 542 |||||||||||||||||||| Sbjct: 127368 gaaaggagaggaggagaggg 127387
>dbj|AP004992.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:OSJNBa0022O02 Length = 176625 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 523 gaaaggagaggaggagaggg 542 |||||||||||||||||||| Sbjct: 44064 gaaaggagaggaggagaggg 44083
>dbj|AK071259.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023084F19, full insert sequence Length = 1913 Score = 40.1 bits (20), Expect = 8.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 518 caggggaaaggagaggaggagagg 541 ||||||| |||||||||||||||| Sbjct: 53 caggggagaggagaggaggagagg 76
>emb|AL646052.1| Ralstonia solanacearum GMI1000 chromosome complete sequence Length = 3716413 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 201 gcgacgggcgacggcgggga 220 |||||||||||||||||||| Sbjct: 879875 gcgacgggcgacggcgggga 879894
>tpe|BN000872.1| TPA: TPA_exp: Mus musculus immunoglobulin heavy chain variable region locus, strain C57BL/6 Length = 2500000 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 523 gaaaggagaggaggagaggg 542 |||||||||||||||||||| Sbjct: 1691690 gaaaggagaggaggagaggg 1691709
>emb|CT025698.13| Mouse DNA sequence from clone RP24-223P14 on chromosome 9, complete sequence Length = 193973 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 522 ggaaaggagaggaggagagg 541 |||||||||||||||||||| Sbjct: 116131 ggaaaggagaggaggagagg 116112
>gb|AC102895.7| Mus musculus chromosome 15, clone RP24-356D22, complete sequence Length = 165778 Score = 40.1 bits (20), Expect = 8.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 519 aggggaaaggagaggaggagaggg 542 |||||||||||||||||| ||||| Sbjct: 158972 aggggaaaggagaggaggggaggg 158949
>gb|AC130720.3| Mus musculus BAC clone RP24-292B4 from chromosome 1, complete sequence Length = 176143 Score = 40.1 bits (20), Expect = 8.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 519 aggggaaaggagaggaggagaggg 542 |||||||||||| ||||||||||| Sbjct: 34380 aggggaaaggaggggaggagaggg 34403
>emb|AL928621.16| Mouse DNA sequence from clone RP23-401G6 on chromosome 2, complete sequence Length = 174248 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 522 ggaaaggagaggaggagagg 541 |||||||||||||||||||| Sbjct: 118676 ggaaaggagaggaggagagg 118657
>gb|AC154010.3| Mus musculus 6 BAC RP24-493P16 (Roswell Park Cancer Institute (C57BL/6J Male) Mouse BAC Library) complete sequence Length = 213098 Score = 40.1 bits (20), Expect = 8.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 519 aggggaaaggagaggaggagaggg 542 |||||||||||||||||| ||||| Sbjct: 59084 aggggaaaggagaggaggggaggg 59107
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 40.1 bits (20), Expect = 8.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 518 caggggaaaggagaggaggagagg 541 ||||||| |||||||||||||||| Sbjct: 4043523 caggggagaggagaggaggagagg 4043546
>emb|AL731882.2|CNS08C8M Oryza sativa chromosome 12, . BAC OSJNBb0028H07 of library OSJNBb from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 132682 Score = 40.1 bits (20), Expect = 8.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 518 caggggaaaggagaggaggagagg 541 ||||||| |||||||||||||||| Sbjct: 79957 caggggagaggagaggaggagagg 79980
>gb|AC144802.3| Mus musculus BAC clone RP24-222O23 from 10, complete sequence Length = 154807 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 516 aacaggggaaaggagaggag 535 |||||||||||||||||||| Sbjct: 89651 aacaggggaaaggagaggag 89632
>gb|AC124011.4| Mus musculus BAC clone RP23-218I3 from 9, complete sequence Length = 208088 Score = 40.1 bits (20), Expect = 8.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 519 aggggaaaggagaggaggagaggg 542 |||||||||||||||||| ||||| Sbjct: 132287 aggggaaaggagaggaggggaggg 132264
>emb|BX005247.9| Mouse DNA sequence from clone RP23-377A17 on chromosome 4, complete sequence Length = 63139 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 519 aggggaaaggagaggaggag 538 |||||||||||||||||||| Sbjct: 45100 aggggaaaggagaggaggag 45119
>emb|AM040264.1| Brucella melitensis biovar Abortus chromosome I, complete sequence, strain 2308 Length = 2121359 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 466 cctgcctgcttgaaggaaga 485 |||||||||||||||||||| Sbjct: 696302 cctgcctgcttgaaggaaga 696283
>gb|L33716.1|MUSFAUB01 Mus musculus Fau pseudogene, microsatellite Length = 1735 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 519 aggggaaaggagaggaggag 538 |||||||||||||||||||| Sbjct: 1531 aggggaaaggagaggaggag 1550
>emb|AL683879.19| Mouse DNA sequence from clone RP23-36D5 on chromosome 11, complete sequence Length = 202441 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 526 aggagaggaggagagggcaa 545 |||||||||||||||||||| Sbjct: 3560 aggagaggaggagagggcaa 3579
>emb|AL929443.4| Mouse DNA sequence from clone RP23-467A7 on chromosome 2, complete sequence Length = 189821 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 519 aggggaaaggagaggaggag 538 |||||||||||||||||||| Sbjct: 73465 aggggaaaggagaggaggag 73446
>emb|AL844180.6| Mouse DNA sequence from clone RP23-403A4 on chromosome 4, complete sequence Length = 213870 Score = 40.1 bits (20), Expect = 8.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 519 aggggaaaggagaggaggagaggg 542 ||||||| |||||||||||||||| Sbjct: 165841 aggggaagggagaggaggagaggg 165864
>gb|AC156638.2| Mus musculus BAC clone RP24-255L24 from chromosome 9, complete sequence Length = 162792 Score = 40.1 bits (20), Expect = 8.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 519 aggggaaaggagaggaggagaggg 542 |||||||||||||||||| ||||| Sbjct: 131239 aggggaaaggagaggaggggaggg 131262
>emb|AL731794.13| Mouse DNA sequence from clone RP23-232L4 on chromosome X, complete sequence Length = 142298 Score = 40.1 bits (20), Expect = 8.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 519 aggggaaaggagaggaggagaggg 542 |||||||||||||||||| ||||| Sbjct: 8279 aggggaaaggagaggaggggaggg 8302 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,185,869 Number of Sequences: 3902068 Number of extensions: 4185869 Number of successful extensions: 92346 Number of sequences better than 10.0: 103 Number of HSP's better than 10.0 without gapping: 103 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 91750 Number of HSP's gapped (non-prelim): 596 length of query: 618 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 595 effective length of database: 17,143,297,704 effective search space: 10200262133880 effective search space used: 10200262133880 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
