ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbasdp14 |
|---|---|
| Clone Library Name | barley_pub |
>S12A1_RAT (P55016) Solute carrier family 12 member 1 (Bumetanide-sensitive| sodium-(potassium)-chloride cotransporter 2) (Kidney-specific Na-K-Cl symporter) Length = 1095 Score = 41.2 bits (95), Expect = 0.003 Identities = 24/94 (25%), Positives = 45/94 (47%), Gaps = 1/94 (1%) Frame = -2 Query: 533 ETTEREGRPQMVDGKQAVVNEQKVDKFLYTMLKLNSTILRHSRMXXXXXXXX-XXXXXXX 357 E +RE ++ D + V E+ Y ++LN + HSR Sbjct: 1007 EKLKRESPWKITDAELEAVKEKS-----YRQVRLNELLQEHSRAANLIVLSLPVARKGSI 1061 Query: 356 XAYFYMEYMDMLVENVPRMLIVRGYRRDVVTFFT 255 YM ++++L +N+P +L+VRG ++V+TF++ Sbjct: 1062 SDLLYMAWLEILTKNLPPVLLVRGNHKNVLTFYS 1095
>S12A1_MOUSE (P55014) Solute carrier family 12 member 1 (Bumetanide-sensitive| sodium-(potassium)-chloride cotransporter 2) (BSC1) (Kidney-specific Na-K-Cl symporter) Length = 1095 Score = 41.2 bits (95), Expect = 0.003 Identities = 24/94 (25%), Positives = 45/94 (47%), Gaps = 1/94 (1%) Frame = -2 Query: 533 ETTEREGRPQMVDGKQAVVNEQKVDKFLYTMLKLNSTILRHSRMXXXXXXXX-XXXXXXX 357 E +RE ++ D + V E+ Y ++LN + HSR Sbjct: 1007 EKLKRESPWKITDAELEAVKEKS-----YRQVRLNELLQEHSRAANLIVLSLPVARKGSI 1061 Query: 356 XAYFYMEYMDMLVENVPRMLIVRGYRRDVVTFFT 255 YM ++++L +N+P +L+VRG ++V+TF++ Sbjct: 1062 SDLLYMAWLEILTKNLPPVLLVRGNHKNVLTFYS 1095
>S12A1_RABIT (P55015) Solute carrier family 12 member 1 (Bumetanide-sensitive| sodium-(potassium)-chloride cotransporter 2) (Kidney-specific Na-K-Cl symporter) Length = 1099 Score = 40.4 bits (93), Expect = 0.005 Identities = 24/94 (25%), Positives = 45/94 (47%), Gaps = 1/94 (1%) Frame = -2 Query: 533 ETTEREGRPQMVDGKQAVVNEQKVDKFLYTMLKLNSTILRHSRMXXXXXXXX-XXXXXXX 357 E +RE ++ D + V E+ Y ++LN + HSR Sbjct: 1011 EKLKRETPWKITDAELEAVKEKS-----YRQVRLNELLQEHSRAANLIVLSLPVARKGSI 1065 Query: 356 XAYFYMEYMDMLVENVPRMLIVRGYRRDVVTFFT 255 YM ++++L +N+P +L+VRG ++V+TF++ Sbjct: 1066 SDLLYMAWLEILTKNLPPVLLVRGNHKNVLTFYS 1099
>S12A1_HUMAN (Q13621) Solute carrier family 12 member 1 (Bumetanide-sensitive| sodium-(potassium)-chloride cotransporter 2) (Kidney-specific Na-K-Cl symporter) Length = 1099 Score = 40.4 bits (93), Expect = 0.005 Identities = 24/94 (25%), Positives = 45/94 (47%), Gaps = 1/94 (1%) Frame = -2 Query: 533 ETTEREGRPQMVDGKQAVVNEQKVDKFLYTMLKLNSTILRHSRMXXXXXXXX-XXXXXXX 357 E +RE ++ D + V E+ Y ++LN + HSR Sbjct: 1011 EKLKRETPWKITDAELEAVKEKS-----YRQVRLNELLQEHSRAANLIVLSLPVARKGSI 1065 Query: 356 XAYFYMEYMDMLVENVPRMLIVRGYRRDVVTFFT 255 YM ++++L +N+P +L+VRG ++V+TF++ Sbjct: 1066 SDLLYMAWLEILTKNLPPVLLVRGNHKNVLTFYS 1099
>S12A6_HUMAN (Q9UHW9) Solute carrier family 12 member 6 (Electroneutral| potassium-chloride cotransporter 3) (K-Cl cotransporter 3) Length = 1150 Score = 36.6 bits (83), Expect = 0.073 Identities = 27/118 (22%), Positives = 55/118 (46%), Gaps = 4/118 (3%) Frame = -2 Query: 596 DSQEAYTSAQRRISAYLSEMKETTEREGRPQMVDGKQAVVN---EQKVDKFLYTMLKLNS 426 D E + Q ++ ++ K R + + ++G Q ++N +Q + ++T +KLN Sbjct: 1033 DEDEETETYQEKVHMTWTKDKYMASRGQKAKSMEGFQDLLNMRPDQSNVRRMHTAVKLNE 1092 Query: 425 TILRHSRMXXXXXXXXXXXXXX-XXAYFYMEYMDMLVENVPRMLIVRGYRRDVVTFFT 255 I+ S YME++++L E + R+L+VRG +V+T ++ Sbjct: 1093 VIVNKSHEAKLVLLNMPGPPRNPEGDENYMEFLEVLTEGLERVLLVRGGGSEVITIYS 1150
>S12A6_MOUSE (Q924N4) Solute carrier family 12 member 6 (Electroneutral| potassium-chloride cotransporter 3) (K-Cl cotransporter 3) Length = 1150 Score = 36.2 bits (82), Expect = 0.095 Identities = 27/118 (22%), Positives = 55/118 (46%), Gaps = 4/118 (3%) Frame = -2 Query: 596 DSQEAYTSAQRRISAYLSEMKETTEREGRPQMVDGKQAVVN---EQKVDKFLYTMLKLNS 426 D E + Q ++ ++ K R + + ++G Q ++N +Q + ++T +KLN Sbjct: 1033 DEDEETETYQEKVHMTWTKDKYMASRGQKVKSMEGFQDLLNMRPDQSNVRRMHTAVKLNE 1092 Query: 425 TILRHSRMXXXXXXXXXXXXXX-XXAYFYMEYMDMLVENVPRMLIVRGYRRDVVTFFT 255 I+ S YME++++L E + R+L+VRG +V+T ++ Sbjct: 1093 VIVNKSHEAKLVLLNMPGPPRNPEGDENYMEFLEVLTEGLERVLLVRGGGSEVITIYS 1150
>S12A4_RAT (Q63632) Solute carrier family 12 member 4 (Electroneutral| potassium-chloride cotransporter 1) (Erythroid K-Cl cotransporter 1) (rKCC1) (Furosemide-sensitive K-Cl cotransporter) Length = 1085 Score = 35.0 bits (79), Expect = 0.21 Identities = 13/30 (43%), Positives = 24/30 (80%) Frame = -2 Query: 344 YMEYMDMLVENVPRMLIVRGYRRDVVTFFT 255 YME++++L E + R+L+VRG R+V+T ++ Sbjct: 1056 YMEFLEVLTEGLERVLLVRGGGREVITIYS 1085
>S12A4_RABIT (Q28677) Solute carrier family 12 member 4 (Electroneutral| potassium-chloride cotransporter 1) (Erythroid K-Cl cotransporter 1) (rbKCC1) Length = 1085 Score = 35.0 bits (79), Expect = 0.21 Identities = 13/30 (43%), Positives = 24/30 (80%) Frame = -2 Query: 344 YMEYMDMLVENVPRMLIVRGYRRDVVTFFT 255 YME++++L E + R+L+VRG R+V+T ++ Sbjct: 1056 YMEFLEVLTEGLERVLLVRGGGREVITIYS 1085
>S12A4_MOUSE (Q9JIS8) Solute carrier family 12 member 4 (Electroneutral| potassium-chloride cotransporter 1) (Erythroid K-Cl cotransporter 1) (mKCC1) Length = 1085 Score = 35.0 bits (79), Expect = 0.21 Identities = 13/30 (43%), Positives = 24/30 (80%) Frame = -2 Query: 344 YMEYMDMLVENVPRMLIVRGYRRDVVTFFT 255 YME++++L E + R+L+VRG R+V+T ++ Sbjct: 1056 YMEFLEVLTEGLERVLLVRGGGREVITIYS 1085
>S12A4_HUMAN (Q9UP95) Solute carrier family 12 member 4 (Electroneutral| potassium-chloride cotransporter 1) (Erythroid K-Cl cotransporter 1) (hKCC1) Length = 1085 Score = 35.0 bits (79), Expect = 0.21 Identities = 13/30 (43%), Positives = 24/30 (80%) Frame = -2 Query: 344 YMEYMDMLVENVPRMLIVRGYRRDVVTFFT 255 YME++++L E + R+L+VRG R+V+T ++ Sbjct: 1056 YMEFLEVLTEGLERVLLVRGGGREVITIYS 1085
>S12A7_MOUSE (Q9WVL3) Solute carrier family 12 member 7 (Electroneutral| potassium-chloride cotransporter 4) (K-Cl cotransporter 4) Length = 1083 Score = 34.7 bits (78), Expect = 0.28 Identities = 13/30 (43%), Positives = 24/30 (80%) Frame = -2 Query: 344 YMEYMDMLVENVPRMLIVRGYRRDVVTFFT 255 YME++++L E + R+L+VRG R+V+T ++ Sbjct: 1054 YMEFLEVLTEGLNRVLLVRGGGREVITIYS 1083
>S12A7_HUMAN (Q9Y666) Solute carrier family 12 member 7 (Electroneutral| potassium-chloride cotransporter 4) (K-Cl cotransporter 4) Length = 1083 Score = 34.7 bits (78), Expect = 0.28 Identities = 13/30 (43%), Positives = 24/30 (80%) Frame = -2 Query: 344 YMEYMDMLVENVPRMLIVRGYRRDVVTFFT 255 YME++++L E + R+L+VRG R+V+T ++ Sbjct: 1054 YMEFLEVLTEGLNRVLLVRGGGREVITIYS 1083
>S12A5_HUMAN (Q9H2X9) Solute carrier family 12 member 5 (Electroneutral| potassium-chloride cotransporter 2) (Erythroid K-Cl cotransporter 2) (Neuronal K-Cl cotransporter) (hKCC2) Length = 1116 Score = 34.7 bits (78), Expect = 0.28 Identities = 12/30 (40%), Positives = 25/30 (83%) Frame = -2 Query: 344 YMEYMDMLVENVPRMLIVRGYRRDVVTFFT 255 YME++++L E++ R+++VRG R+V+T ++ Sbjct: 1087 YMEFLEVLTEHLDRVMLVRGGGREVITIYS 1116
>S12A5_MOUSE (Q91V14) Solute carrier family 12 member 5 (Electroneutral| potassium-chloride cotransporter 2) (K-Cl cotransporter 2) (Neuronal K-Cl cotransporter) (mKCC2) Length = 1115 Score = 34.3 bits (77), Expect = 0.36 Identities = 12/30 (40%), Positives = 24/30 (80%) Frame = -2 Query: 344 YMEYMDMLVENVPRMLIVRGYRRDVVTFFT 255 YME++++L E + R+++VRG R+V+T ++ Sbjct: 1086 YMEFLEVLTEQLDRVMLVRGGGREVITIYS 1115
>S12A5_RAT (Q63633) Solute carrier family 12 member 5 (Electroneutral| potassium-chloride cotransporter 2) (K-Cl cotransporter 2) (Neuronal K-Cl cotransporter) (Furosemide-sensitive K-Cl cotransporter) (rKCC2) Length = 1116 Score = 34.3 bits (77), Expect = 0.36 Identities = 12/30 (40%), Positives = 24/30 (80%) Frame = -2 Query: 344 YMEYMDMLVENVPRMLIVRGYRRDVVTFFT 255 YME++++L E + R+++VRG R+V+T ++ Sbjct: 1087 YMEFLEVLTEQLDRVMLVRGGGREVITIYS 1116
>YRD3_CAEEL (Q09573) Hypothetical protein K02A2.3| Length = 1020 Score = 34.3 bits (77), Expect = 0.36 Identities = 13/27 (48%), Positives = 21/27 (77%) Frame = -2 Query: 344 YMEYMDMLVENVPRMLIVRGYRRDVVT 264 YM Y+D+L E++PR+L + G R+V+T Sbjct: 991 YMTYLDVLTEDLPRVLFIGGSGREVIT 1017
>S12A2_HUMAN (P55011) Solute carrier family 12 member 2 (Bumetanide-sensitive| sodium-(potassium)-chloride cotransporter 1) (Basolateral Na-K-Cl symporter) Length = 1212 Score = 32.0 bits (71), Expect = 1.8 Identities = 16/66 (24%), Positives = 32/66 (48%), Gaps = 1/66 (1%) Frame = -2 Query: 449 YTMLKLNSTILRHSRMXXXXXXXX-XXXXXXXXAYFYMEYMDMLVENVPRMLIVRGYRRD 273 Y ++LN + HS + YM +++ L +++P +L+VRG + Sbjct: 1147 YRQIRLNELLKEHSSTANIIVMSLPVARKGAVSSALYMAWLEALSKDLPPILLVRGNHQS 1206 Query: 272 VVTFFT 255 V+TF++ Sbjct: 1207 VLTFYS 1212
>S12A2_MOUSE (P55012) Solute carrier family 12 member 2 (Bumetanide-sensitive| sodium-(potassium)-chloride cotransporter 1) (Basolateral Na-K-Cl symporter) Length = 1205 Score = 32.0 bits (71), Expect = 1.8 Identities = 16/66 (24%), Positives = 32/66 (48%), Gaps = 1/66 (1%) Frame = -2 Query: 449 YTMLKLNSTILRHSRMXXXXXXXX-XXXXXXXXAYFYMEYMDMLVENVPRMLIVRGYRRD 273 Y ++LN + HS + YM +++ L +++P +L+VRG + Sbjct: 1140 YRQIRLNELLKEHSSTANIIVMSLPVARKGAVSSALYMAWLEALSKDLPPVLLVRGNHQS 1199 Query: 272 VVTFFT 255 V+TF++ Sbjct: 1200 VLTFYS 1205
>SYE1_THETN (Q8RB93) Glutamyl-tRNA synthetase 1 (EC 6.1.1.17) (Glutamate--tRNA| ligase 1) (GluRS 1) Length = 481 Score = 31.6 bits (70), Expect = 2.3 Identities = 13/33 (39%), Positives = 22/33 (66%) Frame = -2 Query: 548 LSEMKETTEREGRPQMVDGKQAVVNEQKVDKFL 450 L EM++ EREGRP M GK + +++++ +L Sbjct: 107 LEEMRKQAEREGRPFMYTGKCRNLTKEQIENYL 139
>NKCL_MANSE (Q25479) Bumetanide-sensitive sodium-(potassium)-chloride| cotransporter (Na-K-CL symporter) Length = 1060 Score = 31.6 bits (70), Expect = 2.3 Identities = 12/30 (40%), Positives = 21/30 (70%) Frame = -2 Query: 344 YMEYMDMLVENVPRMLIVRGYRRDVVTFFT 255 YM +++M+ ++P ML VRG V+TF++ Sbjct: 1031 YMAWLEMMSRDLPPMLFVRGNHTSVLTFYS 1060
>PER_ARTRA (P28313) Peroxidase precursor (EC 1.11.1.7)| Length = 364 Score = 31.2 bits (69), Expect = 3.1 Identities = 34/138 (24%), Positives = 50/138 (36%), Gaps = 24/138 (17%) Frame = +1 Query: 193 SILCYGGTTTEWGSGCMYFDQVKNVTTSLLY------PLTINMRGTFSTSISMYSM*KYA 354 S+ C GG +T C++FD + ++ T+ P+ +R F +I A Sbjct: 29 SVTCPGGQSTSNSQCCVWFDVLDDLQTNFYQGSKCESPVRKILRIVFHDAIGFSPALTAA 88 Query: 355 GWFSGGG------------------GRLTSTTAAILECLSIVEFNFNIV*RNLSTFCSFT 480 G F GGG G LT T +E L V N + + F Sbjct: 89 GQFGGGGADGSIIAHSNIELAFPANGGLTDT----IEALRAVGINHGV---SFGDLIQFA 141 Query: 481 TACFPSTICGRPSLSVVS 534 TA S G P L ++ Sbjct: 142 TAVGMSNCPGSPRLEFLT 159
>PER_COPCI (P28314) Peroxidase precursor (EC 1.11.1.7)| Length = 363 Score = 30.8 bits (68), Expect = 4.0 Identities = 34/138 (24%), Positives = 50/138 (36%), Gaps = 24/138 (17%) Frame = +1 Query: 193 SILCYGGTTTEWGSGCMYFDQVKNVTTSLLY------PLTINMRGTFSTSISMYSM*KYA 354 S+ C GG +T C++FD + ++ T+ P+ +R F +I A Sbjct: 28 SVTCPGGQSTSNSQCCVWFDVLDDLQTNFYQGSKCESPVRKILRIVFHDAIGFSPALTAA 87 Query: 355 GWFSGGG------------------GRLTSTTAAILECLSIVEFNFNIV*RNLSTFCSFT 480 G F GGG G LT T +E L V N + + F Sbjct: 88 GQFGGGGADGSIIAHSNIELAFPANGGLTDT----VEALRAVGINHGV---SFGDLIQFA 140 Query: 481 TACFPSTICGRPSLSVVS 534 TA S G P L ++ Sbjct: 141 TAVGMSNCPGSPRLEFLT 158
>TRI35_HUMAN (Q9UPQ4) Tripartite motif protein 35 (Hemopoeitic lineage switch| protein 5) Length = 493 Score = 30.4 bits (67), Expect = 5.2 Identities = 23/72 (31%), Positives = 28/72 (38%), Gaps = 6/72 (8%) Frame = +3 Query: 252 SSKKCDNISSISPDYQHAWDVLYKHIHVLHVEVCRVVQRWRREAHQHHSCHPG------V 413 SS C S + HAW+V + V V RV Q E H H H V Sbjct: 340 SSAPCLLGSRVFSQGSHAWEVALGGLQSWRVGVVRVRQDSGAEGHSHSCYHDTRSGFWYV 399 Query: 414 PEYRGVQLQHCV 449 +GV+ HCV Sbjct: 400 CRTQGVEGDHCV 411
>YBFD_ECOLI (P28916) H repeat-associated protein ybfD (ORF-H3)| Length = 253 Score = 30.0 bits (66), Expect = 6.8 Identities = 14/35 (40%), Positives = 20/35 (57%) Frame = +3 Query: 258 KKCDNISSISPDYQHAWDVLYKHIHVLHVEVCRVV 362 KK SI PDY+ AW V +K +L + +C V+ Sbjct: 4 KKLMEHISIIPDYRQAWKVEHKLSDILLLTICAVI 38
>AFF1_HUMAN (P51825) AF4/FMR2 family member 1 (AF-4 protein) (Proto-oncogene| AF4) (FEL protein) Length = 1210 Score = 30.0 bits (66), Expect = 6.8 Identities = 15/47 (31%), Positives = 25/47 (53%) Frame = -1 Query: 444 NVEVELHDTQALQDGSCGAGEPPSATAEPPCILLHGVHGYACRERPT 304 ++ V++HD + QD +PPS T PP + V A +++PT Sbjct: 248 DLAVKVHDKETPQDSLVAPAQPPSQTFPPPSLPSKSV---AMQQKPT 291
>S12A2_SQUAC (P55013) Solute carrier family 12 member 2 (Bumetanide-sensitive| sodium-(potassium)-chloride cotransporter 1) (NA-K-CL symporter) (NKCC) Length = 1191 Score = 30.0 bits (66), Expect = 6.8 Identities = 11/30 (36%), Positives = 23/30 (76%) Frame = -2 Query: 344 YMEYMDMLVENVPRMLIVRGYRRDVVTFFT 255 YM +++ L +++P +L+VRG + V+TF++ Sbjct: 1162 YMAWIETLSKDLPPILLVRGNHQSVLTFYS 1191 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 104,622,365 Number of Sequences: 219361 Number of extensions: 2348106 Number of successful extensions: 5923 Number of sequences better than 10.0: 26 Number of HSP's better than 10.0 without gapping: 5646 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5920 length of database: 80,573,946 effective HSP length: 108 effective length of database: 56,882,958 effective search space used: 6712189044 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
